BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645100|ref|NP_207270.1| outer membrane protein
(omp11) [Helicobacter pylori 26695]
(186 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1JJF|A Chain A, Structural Basis For The Substrate Spec... 28 0.64
pdb|1JT2|A Chain A, Structural Basis For The Substrate Spec... 28 0.84
pdb|1LLW|A Chain A, Structural Studies On The Synchronizati... 26 2.4
pdb|1MYR| Myrosinase From Sinapis Alba 25 5.4
pdb|1EVH|A Chain A, Evh1 Domain From Murine Enabled In Comp... 25 5.4
pdb|1EGX|A Chain A, Solution Structure Of The Ena-Vasp Homo... 25 5.4
pdb|1QC6|A Chain A, Evh1 Domain From EnaVASP-Like Protein I... 25 7.1
pdb|1GU9|B Chain B, Crystal Structure Of Mycobacterium Tube... 24 9.3
>pdb|1JJF|A Chain A, Structural Basis For The Substrate Specificity Of The
Feruloyl Esterase Domain Of The Cellulosomal Xylanase Z
Of Clostridium Thermocellum
Length = 268
Score = 28.1 bits (61), Expect = 0.64
Identities = 17/41 (41%), Positives = 21/41 (50%), Gaps = 2/41 (4%)
Query: 85 EHTKTNLLTYGGGGDLIVNLIPLDKFALGLIGGVQLAGNTW 125
EH L+ GGG + L LDKFA IG + A NT+
Sbjct: 145 EHRAIAGLSMGGGQSFNIGLTNLDKFA--YIGPISAAPNTY 183
>pdb|1JT2|A Chain A, Structural Basis For The Substrate Specificity Of The
Ferul Domain Of The Cellulosomal Xylanase Z From C.
Thermocellum
Length = 268
Score = 27.7 bits (60), Expect = 0.84
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 85 EHTKTNLLTYGGGGDLIVNLIPLDKFALGLIGGVQLAGNTW 125
EH L GGG + L LDKFA IG + A NT+
Sbjct: 145 EHRAIAGLAMGGGQSFNIGLTNLDKFA--YIGPISAAPNTY 183
>pdb|1LLW|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Complex With
2-Oxoglutarate
pdb|1LLZ|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Reduced Enzyme
pdb|1LM1|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Native Enzyme
Length = 1520
Score = 26.2 bits (56), Expect = 2.4
Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 16/87 (18%)
Query: 46 RHGNDLYGLNFKLGFVGFANKWFGARVYGFLDWFNTSG-TEHTKTNLLTYGG----GGDL 100
++GN+ + N L F G A + FGA FN G T H + Y G GG++
Sbjct: 1291 KYGNNGFEGNITLNFQGAAGQSFGA--------FNLDGMTLHLQGEANDYVGKGMNGGEI 1342
Query: 101 IVNLIPLDKFALG---LIGGVQLAGNT 124
++ P FA +IG L G T
Sbjct: 1343 VIVPHPQASFAPEDNVIIGNTCLYGAT 1369
>pdb|1MYR| Myrosinase From Sinapis Alba
Length = 501
Score = 25.0 bits (53), Expect = 5.4
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 63 FANKWFGARVYGFLDWFNTSGTEHTKTNLLTY 94
F NK++ +Y + +T G+E+ K ++L Y
Sbjct: 396 FKNKYYNPLIYVTENGISTPGSENRKESMLDY 427
>pdb|1EVH|A Chain A, Evh1 Domain From Murine Enabled In Complex With Acta
Peptide
Length = 112
Score = 25.0 bits (53), Expect = 5.4
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 34 RYGPYNSNYSDWRHGNDLYGLNF 56
+Y + WR +YGLNF
Sbjct: 69 KYNQATQTFHQWRDARQVYGLNF 91
>pdb|1EGX|A Chain A, Solution Structure Of The Ena-Vasp Homology 1 (Evh1)
Domain Of Human Vasodilator-Stimulated Phosphoprotein
(Vasp)
Length = 115
Score = 25.0 bits (53), Expect = 5.4
Identities = 8/23 (34%), Positives = 12/23 (51%)
Query: 34 RYGPYNSNYSDWRHGNDLYGLNF 56
+Y N+ WR ++GLNF
Sbjct: 71 KYNQATPNFHQWRDARQVWGLNF 93
>pdb|1QC6|A Chain A, Evh1 Domain From EnaVASP-Like Protein In Complex With
Acta Peptide
pdb|1QC6|B Chain B, Evh1 Domain From EnaVASP-Like Protein In Complex With
Acta Peptide
Length = 130
Score = 24.6 bits (52), Expect = 7.1
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 34 RYGPYNSNYSDWRHGNDLYGLNF 56
+Y + WR +YGLNF
Sbjct: 70 KYNQATPTFHQWRDARQVYGLNF 92
>pdb|1GU9|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Alkylperoxidase Ahpd
pdb|1GU9|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis
Alkylperoxidase Ahpd
pdb|1GU9|I Chain I, Crystal Structure Of Mycobacterium Tuberculosis
Alkylperoxidase Ahpd
pdb|1GU9|K Chain K, Crystal Structure Of Mycobacterium Tuberculosis
Alkylperoxidase Ahpd
pdb|1GU9|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Alkylperoxidase Ahpd
pdb|1GU9|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
Alkylperoxidase Ahpd
pdb|1GU9|J Chain J, Crystal Structure Of Mycobacterium Tuberculosis
Alkylperoxidase Ahpd
pdb|1GU9|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis
Alkylperoxidase Ahpd
pdb|1GU9|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis
Alkylperoxidase Ahpd
pdb|1GU9|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
Alkylperoxidase Ahpd
pdb|1GU9|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis
Alkylperoxidase Ahpd
pdb|1GU9|L Chain L, Crystal Structure Of Mycobacterium Tuberculosis
Alkylperoxidase Ahpd
Length = 177
Score = 24.3 bits (51), Expect = 9.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 16 ALAGEVNGFFMGAGYQQGRY 35
A+ G N F+ G G+ +GRY
Sbjct: 76 AIXGXNNVFYRGRGFLEGRY 95
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.325 0.145 0.473
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,305,851
Number of Sequences: 13198
Number of extensions: 60985
Number of successful extensions: 118
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 113
Number of HSP's gapped (non-prelim): 8
length of query: 186
length of database: 2,899,336
effective HSP length: 83
effective length of query: 103
effective length of database: 1,803,902
effective search space: 185801906
effective search space used: 185801906
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (24.3 bits)