BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645101|ref|NP_207271.1| molybdenum ABC transporter,
periplasmic molybdate-binding protein (modA) [Helicobacter pylori
26695]
(246 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1ATG| Azotobacter Vinelandii Periplasmic Molybdate-Bi... 119 4e-28
pdb|1AMF| Crystal Structure Of Moda, A Molybdate Transpor... 81 1e-16
pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein... 28 1.3
pdb|1K8Q|A Chain A, Crystal Structure Of Dog Gastric Lipase... 28 1.3
pdb|1HDM|B Chain B, Histocompatibility Antigen Hla-Dm 27 2.2
pdb|1L2Q|A Chain A, Crystal Structure Of The Methanosarcina... 27 2.8
pdb|1IWE|A Chain A, Imp Complex Of The Recombinant Mouse-Mu... 26 3.7
pdb|1BHE| Polygalacturonase From Erwinia Carotovora Ssp. ... 26 3.7
pdb|1DMG|A Chain A, Crystal Structure Of Ribosomal Protein L4 25 8.3
>pdb|1ATG| Azotobacter Vinelandii Periplasmic Molybdate-Binding Protein
Length = 231
Score = 119 bits (297), Expect = 4e-28
Identities = 83/230 (36%), Positives = 124/230 (53%), Gaps = 8/230 (3%)
Query: 23 DLKIAAAANLTRALKALVKEFQKEHPKDTVNISFNSSGKLYAQIIQNAPFDLFISADMIR 82
+LK+ A N L+ L +F K+ V IS SSG +YAQI+ AP+++F SAD
Sbjct: 1 ELKVVTATNFLGTLEQLAGQFAKQTGHAVV-ISSGSSGPVYAQIVNGAPYNVFFSADEKS 59
Query: 83 PKKLYDKKIT-PFKEEVYAKGVLVLWS--EDLKMDSLEILKNPKIKRIAMANPKLAPYGK 139
P+KL ++ P YA G LVLWS L + ++L + IA++NP++APYG
Sbjct: 60 PEKLDNQGFALPGSRFTYAIGKLVLWSAKPGLVDNQGKVLAGNGWRHIAISNPQIAPYGL 119
Query: 140 ASMEVLENLKLTPSL--KSKIVYGASISQAHQFVATKNAQIGFGALSLMDKKDKNL--SY 195
A +VL +L L L + +IV S+ QAH A+ A +GF AL+ + + + S+
Sbjct: 120 AGTQVLTHLGLLDKLTAQERIVEANSVGQAHSQTASGAADLGFVALAQIIQAAAKIPGSH 179
Query: 196 FIIDKALYNPIEQALIITKNGANNPLAKVFKDFLFSPKARAIFKEYGYIV 245
+ Y PI Q +ITK+ A A+ F ++ PKA AI K GY++
Sbjct: 180 WFPPANYYEPIVQQAVITKSTAEKANAEQFMSWMKGPKAVAIIKAAGYVL 229
>pdb|1AMF| Crystal Structure Of Moda, A Molybdate Transport Protein,
Complexed With Molybdate
pdb|1WOD| Crystal Structure Of Moda, A Molybdate Protein, Complexed With
Tungstate
Length = 233
Score = 81.3 bits (199), Expect = 1e-16
Identities = 69/235 (29%), Positives = 113/235 (47%), Gaps = 20/235 (8%)
Query: 24 LKIAAAANLTRALKALVKEFQKEHPKDTVNISFNSSGKLYAQIIQNAPFDLFISADMIRP 83
+ + AAA+LT A++ + +F+KE D V+ SF SS L QI AP DLFISAD
Sbjct: 5 ITVFAAASLTNAMQDIATQFKKEKGVDVVS-SFASSSTLARQIEAGAPADLFISADQKWM 63
Query: 84 KKLYDKKI--TPFKEEVYAKGVLVL---------WSEDLKMDSLEILKNPKIKRIAMANP 132
DKK T ++ + ++V+ ++ D K + +L R+A+ +P
Sbjct: 64 DYAVDKKAIDTATRQTLLGNSLVVVAPKASVQKDFTIDSKTNWTSLLNGG---RLAVGDP 120
Query: 133 KLAPYGKASMEVLENLKLTPSLKSKIVYGASISQAHQFVATKNAQIG--FGALSLMDKKD 190
+ P G + E L+ L +L K+ + A V A +G +G+ ++ K
Sbjct: 121 EHVPAGIYAKEALQKLGAWDTLSPKLAPAEDVRGALALVERNEAPLGIVYGSDAVASKGV 180
Query: 191 KNLSYFIIDKALYNPIEQALIITKNGANNPLAKVFKDFLFSPKARAIFKEYGYIV 245
K ++ F D + +E + + + G NN K F D+L P+A IFK YG+ +
Sbjct: 181 KVVATFPEDS--HKKVEYPVAVVE-GHNNATVKAFYDYLKGPQAAEIFKRYGFTI 232
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
Length = 367
Score = 27.7 bits (60), Expect = 1.3
Identities = 25/78 (32%), Positives = 39/78 (49%), Gaps = 11/78 (14%)
Query: 134 LAPYGKASMEV---LENLKLTPSLKSKIVYGASISQAHQFVATKNAQIGFGALS-LMDKK 189
L P + +++V +E+LK +LK +YG Q A KNA I G ++D
Sbjct: 80 LTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYP-QIKALKNANIVVGTPGRILDHI 138
Query: 190 D------KNLSYFIIDKA 201
+ KN+ YFI+D+A
Sbjct: 139 NRGTLNLKNVKYFILDEA 156
>pdb|1K8Q|A Chain A, Crystal Structure Of Dog Gastric Lipase In Complex With A
Phosphonate Inhibitor
pdb|1K8Q|B Chain B, Crystal Structure Of Dog Gastric Lipase In Complex With A
Phosphonate Inhibitor
Length = 377
Score = 27.7 bits (60), Expect = 1.3
Identities = 19/60 (31%), Positives = 29/60 (47%), Gaps = 6/60 (10%)
Query: 121 NPKIKRIAMANPKLAPYG--KASMEVLENLKLTPSLKSKIVYGASISQAH----QFVATK 174
NPK+ + LAP K + ++ L L PS K+++G I H QF+AT+
Sbjct: 166 NPKLAKRIKTFYALAPVATVKYTETLINKLMLVPSFLFKLIFGNKIFYPHHFFDQFLATE 225
>pdb|1HDM|B Chain B, Histocompatibility Antigen Hla-Dm
Length = 193
Score = 26.9 bits (58), Expect = 2.2
Identities = 19/72 (26%), Positives = 29/72 (39%)
Query: 82 RPKKLYDKKITPFKEEVYAKGVLVLWSEDLKMDSLEILKNPKIKRIAMANPKLAPYGKAS 141
RP + K TPF +W ++ KN K+ + A+ P G +
Sbjct: 89 RPPSVQVAKTTPFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWT 148
Query: 142 MEVLENLKLTPS 153
+ L +L LTPS
Sbjct: 149 YQTLSHLALTPS 160
>pdb|1L2Q|A Chain A, Crystal Structure Of The Methanosarcina Barkeri
Monomethylamine Methyltransferase (Mtmb)
pdb|1L2R|A Chain A, Crystal Structure Of The Methanosarcina Barkeri
Monomethylamine Methyltransferase (Mtmb)
Length = 458
Score = 26.6 bits (57), Expect = 2.8
Identities = 16/49 (32%), Positives = 22/49 (44%)
Query: 35 ALKALVKEFQKEHPKDTVNISFNSSGKLYAQIIQNAPFDLFISADMIRP 83
A+ + KEF +D VN+ S G I+Q P IS D+ P
Sbjct: 94 AINNVQKEFVLGTGRDAVNVRKRSVGDKAKPIVQGGPTGSPISEDVFMP 142
>pdb|1IWE|A Chain A, Imp Complex Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase
pdb|1IWE|B Chain B, Imp Complex Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase
pdb|1LNY|A Chain A, Crystal Structure Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase Complexed With 6-Phosphoryl-
Imp, Gdp And Mg
pdb|1LNY|B Chain B, Crystal Structure Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase Complexed With 6-Phosphoryl-
Imp, Gdp And Mg
pdb|1LON|A Chain A, Crystal Structure Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase Complexed With 6-Phosphoryl-
Imp, Gdp And Hadacidin
pdb|1LOO|A Chain A, Crystal Structure Of The Mouse-Muscle Adenylosuccinate
Synthetase Ligated With Gtp
pdb|1MEZ|A Chain A, Structure Of The Recombinant Mouse-Muscle Adenylosuccinate
Synthetase Complexed With Samp, Gdp, So4(2-), And Mg(2+)
pdb|1MF0|A Chain A, Structure Of The Recombinant Mouse-Muscle Adenylosuccinate
Synthetase Complexed With Amp, Gdp, Hpo4(2-), And Mg(2+)
pdb|1MF1|A Chain A, Structure Of The Recombinant Mouse-Muscle Adenylosuccinate
Synthetase Complexed With Amp
pdb|1J4B|A Chain A, Recombinant Mouse-Muscle Adenylosuccinate Synthetase
Length = 457
Score = 26.2 bits (56), Expect = 3.7
Identities = 12/39 (30%), Positives = 22/39 (55%)
Query: 112 KMDSLEILKNPKIKRIAMANPKLAPYGKASMEVLENLKL 150
K+D L++L K+ N K PY A+ E+L+ +++
Sbjct: 363 KLDILDVLSEIKVGISYKLNGKRIPYFPANQEILQKVEV 401
>pdb|1BHE| Polygalacturonase From Erwinia Carotovora Ssp. Carotovora
Length = 376
Score = 26.2 bits (56), Expect = 3.7
Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
Query: 109 EDLKMDSLEILKNPKIKRIAMANPKLAPYGKASMEVLENLKLTPSLKSKIVY--GASISQ 166
+D K+ E+ + K+K++ P+L K+ L N+ L S +V+ G +
Sbjct: 128 QDKKVSWWELAADAKVKKLKQNTPRLIQINKSKNFTLYNVSLINSPNFHVVFSDGDGFTA 187
Query: 167 AHQFVATKNAQIGFGALSLMDKKDKNLSY 195
+ T + + M K+ ++Y
Sbjct: 188 WKTTIKTPSTARNTDGIDPMSSKNITIAY 216
>pdb|1DMG|A Chain A, Crystal Structure Of Ribosomal Protein L4
Length = 225
Score = 25.0 bits (53), Expect = 8.3
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 121 NPKIKRIAMANPKLAPYGKASMEVLENLKL----TPSLKSKIVYGASISQAHQFVATKNA 176
N K+K++A+ + Y + + VL++LKL T SLK +I+ +S +
Sbjct: 101 NKKMKKLALRSALSVKYRENKLLVLDDLKLERPKTKSLK-EILQNLQLSDKKTLIVLPWK 159
Query: 177 QIGFGALSLMDKKDKNLSYFIID 199
+ G+ + L + ++ I D
Sbjct: 160 EEGYMNVKLSGRNLPDVKVIIAD 182
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.136 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,282,212
Number of Sequences: 13198
Number of extensions: 47995
Number of successful extensions: 126
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 114
Number of HSP's gapped (non-prelim): 9
length of query: 246
length of database: 2,899,336
effective HSP length: 86
effective length of query: 160
effective length of database: 1,764,308
effective search space: 282289280
effective search space used: 282289280
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)