BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645103|ref|NP_207273.1| molybdenum ABC transporter,
ATP-binding protein (modD) [Helicobacter pylori 26695]
(265 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1G29|1 Chain 1, Malk >gi|12084695|pdb|1G29|2 Chain 2, Malk 136 2e-33
pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacteria... 112 6e-26
pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding... 109 4e-25
pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Pe... 88 9e-19
pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc T... 79 4e-16
pdb|1JSQ|A Chain A, Structure Of Msba From Escherichia Coli... 79 5e-16
pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atp... 64 2e-11
pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformati... 62 5e-11
pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free ... 61 1e-10
pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B... 61 2e-10
pdb|1II8|B Chain B, Crystal Structure Of The P. Furiosus Ra... 30 0.28
pdb|1F2U|B Chain B, Crystal Structure Of Rad50 Abc-Atpase >... 30 0.28
pdb|1CHD| Cheb Methylesterase Domain 27 1.8
pdb|1A2O|A Chain A, Structural Basis For Methylesterase Che... 27 1.8
pdb|1GZ0|A Chain A, 23s Ribosomal Rna G2251 2'o-Methyltrans... 27 1.8
pdb|4BLM|A Chain A, Beta-Lactamase (E.C.3.5.2.6) (Penicilli... 26 4.1
pdb|1MBL|A Chain A, Beta-Lactamase (E.C.3.5.2.6) Mutant Wit... 26 5.4
pdb|1D2S|A Chain A, Crystal Structure Of The N-Terminal Lam... 26 5.4
pdb|1JVN|A Chain A, Crystal Structure Of Imidazole Glycerol... 25 7.0
pdb|1KZH|A Chain A, Structure Of A Pyrophosphate-Dependent ... 25 7.0
pdb|1JEC|A Chain A, Crystal Structure Of Atp Sulfurylase In... 25 7.0
pdb|1HO3|A Chain A, Crystal Structure Analysis Of E. Coli L... 25 9.1
pdb|1G8P|A Chain A, Crystal Structure Of Bchi Subunit Of Ma... 25 9.1
pdb|1MWX|A Chain A, Structure Of Penicillin Binding Protein... 25 9.1
pdb|4ECA|A Chain A, Asparaginase From E. Coli, Mutant T89v ... 25 9.1
pdb|1G8Y|A Chain A, Crystal Structure Of The Hexameric Repl... 25 9.1
pdb|3ECA|A Chain A, Asparaginase Type Ii (E.C.3.5.1.1) (Eca... 25 9.1
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 136 bits (343), Expect = 2e-33
Identities = 75/197 (38%), Positives = 113/197 (57%), Gaps = 7/197 (3%)
Query: 21 IDLEIKEAEVVALLGESGAGKSTILRILAGLEAVNSGYIEVNHSVWLDTQKKIFLKPQQR 80
+ LE+K+ E + LLG SG GK+T LR++AGLE + G I + + D +K IF+ P+ R
Sbjct: 22 MSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDR 81
Query: 81 KIGFVFQDYALFPHLNVYQNIAFAHPKDK-------NKIHEVLRLMRLENLSQQKILQLS 133
I VFQ YAL+PH+ VY NIAF K ++ EV L+ L L +K +LS
Sbjct: 82 DIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELS 141
Query: 134 GGQAQRVALARALIAAKNLLLLDEPLNALDNALKNEVQQGLLDFIKRENLSVLLVSHNPN 193
GGQ QRVAL RA++ + L+DEPL+ LD L+ ++ L ++ ++ + V+H+
Sbjct: 142 GGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV 201
Query: 194 EITKLAQTFLFLNNGVI 210
E + +N GV+
Sbjct: 202 EAMTMGDRIAVMNRGVL 218
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 112 bits (279), Expect = 6e-26
Identities = 68/214 (31%), Positives = 118/214 (54%), Gaps = 12/214 (5%)
Query: 20 NIDLEIKEAEVVALLGESGAGKSTILRILAGLEAVNSGYIEVNHSVWLDTQKKIFLKPQQ 79
N++L IKE E V+++G SG+GKST+L I+ L+ G + +++ D K ++
Sbjct: 23 NVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRR 82
Query: 80 RKIGFVFQDYALFPHLNVYQNI----------AFAHPKDKNKIHEVLRLMRL-ENLSQQK 128
KIGFVFQ + L P L +N+ A + + + + E L++ L E + K
Sbjct: 83 DKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHK 142
Query: 129 ILQLSGGQAQRVALARALIAAKNLLLLDEPLNALDNALKNEVQQGLLDFIKRENLSVLLV 188
QLSGGQ QRVA+ARAL ++L D+P ALD+ ++ Q L + + +V++V
Sbjct: 143 PNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVV 202
Query: 189 SHNPNEITKLAQTFLFLNNGVIDPNQENRLFSNR 222
+H+ N + + + ++L +G ++ ++ R F +R
Sbjct: 203 THDIN-VARFGERIIYLKDGEVEREEKLRGFDDR 235
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 109 bits (272), Expect = 4e-25
Identities = 69/214 (32%), Positives = 115/214 (53%), Gaps = 12/214 (5%)
Query: 20 NIDLEIKEAEVVALLGESGAGKSTILRILAGLEAVNSGYIEVNHSVWLDTQKKIFLKPQQ 79
N++L IKE E V++ G SG+GKST L I+ L+ G + +++ D K ++
Sbjct: 23 NVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRR 82
Query: 80 RKIGFVFQDYALFPHLNVYQNI----------AFAHPKDKNKIHEVLRLMRL-ENLSQQK 128
KIGFVFQ + L P L +N+ A + + + + E L+ L E + K
Sbjct: 83 DKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAELEERFANHK 142
Query: 129 ILQLSGGQAQRVALARALIAAKNLLLLDEPLNALDNALKNEVQQGLLDFIKRENLSVLLV 188
QLSGGQ QRVA+ARAL ++L DEP ALD+ ++ Q L + + +V++V
Sbjct: 143 PNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVVV 202
Query: 189 SHNPNEITKLAQTFLFLNNGVIDPNQENRLFSNR 222
+H+ N + + + ++L +G ++ ++ R F +R
Sbjct: 203 THDIN-VARFGERIIYLKDGEVEREEKLRGFDDR 235
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 88.2 bits (217), Expect = 9e-19
Identities = 67/216 (31%), Positives = 113/216 (52%), Gaps = 23/216 (10%)
Query: 21 IDLEIKEAEVVALLGESGAGKSTILRILAGLEAVNSGYIEVN-HSVWL----DTQKKIFL 75
+ L+ + +V++++G SG+GKST LR + LE + G I VN ++ L D Q K+
Sbjct: 25 VSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVAD 84
Query: 76 KPQQR----KIGFVFQDYALFPHLNVYQNIAFA---------HPKDKNKIHEVLRLMRLE 122
K Q R ++ VFQ + L+ H+ V +N+ A H + + + ++ E
Sbjct: 85 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDE 144
Query: 123 NLSQQKILQLSGGQAQRVALARALIAAKNLLLLDEPLNALDNALKNEVQQGLLDFIKREN 182
+ + LSGGQ QRV++ARAL ++LL DEP +ALD L EV + ++ + E
Sbjct: 145 RAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLR-IMQQLAEEG 203
Query: 183 LSVLLVSHNPNEITKLAQTFLFLNNGVI----DPNQ 214
++++V+H ++ +FL+ G I DP Q
Sbjct: 204 KTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQ 239
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 79.3 bits (194), Expect = 4e-16
Identities = 65/197 (32%), Positives = 94/197 (46%), Gaps = 11/197 (5%)
Query: 21 IDLEIKEAEVVALLGESGAGKSTILRILAGLEAVNSGYIEVNHSVWLDTQKKIFLKPQQR 80
IDL++ ++V L+G +GAGK+T L +AGL G I N D K +
Sbjct: 25 IDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQ---DITNKPAHVINRX 81
Query: 81 KIGFVFQDYALFPHLNVYQNIAFA--HPKDKNKIHEVLRLM-----RLENLSQQKILQLS 133
I V + +FP L VY+N+ + KDK I L + RL+ +Q LS
Sbjct: 82 GIALVPEGRRIFPELTVYENLXXGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLS 141
Query: 134 GGQAQRVALARALIAAKNLLLLDEPLNALDNALKNEVQQGLLDFIKRENLSVLLVSHNPN 193
GG+ Q +A+ RAL + LL DEP L L +EV + ++ I +E ++LLV N
Sbjct: 142 GGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFE-VIQKINQEGTTILLVEQNAL 200
Query: 194 EITKLAQTFLFLNNGVI 210
K+A L G I
Sbjct: 201 GALKVAHYGYVLETGQI 217
>pdb|1JSQ|A Chain A, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|B Chain B, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|C Chain C, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|D Chain D, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|E Chain E, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|F Chain F, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|G Chain G, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|H Chain H, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
Length = 582
Score = 79.0 bits (193), Expect = 5e-16
Identities = 61/217 (28%), Positives = 111/217 (51%), Gaps = 22/217 (10%)
Query: 20 NIDLEIKEAEVVALLGESGAGKSTILRILAGLEAVNSGYIEVN-HSVWLDTQKKIFLKPQ 78
NI+L+I + VAL+G SG+GKSTI ++ ++ G I ++ H + ++ L
Sbjct: 361 NINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDL-----REYTLASL 415
Query: 79 QRKIGFVFQDYALFPHLNVYQNIAFAHPKD--KNKIHEVLRLMR-----------LENLS 125
+ ++ V Q+ LF V NIA+A + + +I E R+ L+ +
Sbjct: 416 RNQVALVSQNVHLFND-TVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVI 474
Query: 126 QQKILQLSGGQAQRVALARALIAAKNLLLLDEPLNALDNALKNEVQQGLLDFIKRENLSV 185
+ + LSGGQ QR+A+ARAL+ +L+LDE +ALD + +Q L + ++N +
Sbjct: 475 GENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL--QKNRTS 532
Query: 186 LLVSHNPNEITKLAQTFLFLNNGVIDPNQENRLFSNR 222
L+++H + I K + + + +++ N L +R
Sbjct: 533 LVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHR 569
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 63.9 bits (154), Expect = 2e-11
Identities = 57/199 (28%), Positives = 99/199 (49%), Gaps = 19/199 (9%)
Query: 25 IKEAEVVALLGESGAGKSTILRILAGLEAVNSGYIEVNHSVWLDTQKKIFLKPQQRKIGF 84
++ EV AL+G +G+GKST+ +L L G + ++ + + R++
Sbjct: 40 LRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYL----HRQVAA 95
Query: 85 VFQDYALFPHLNVYQNIAFAHPKD-----------KNKIHEVLRLMR--LENLSQQKILQ 131
V Q+ +F ++ +NIA+ + K+ H + + + + Q
Sbjct: 96 VGQEPQVFGR-SLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQ 154
Query: 132 LSGGQAQRVALARALIAAKNLLLLDEPLNALDNALKNEVQQGLLDFIKRENLSVLLVSHN 191
LSGGQ Q VALARALI +L+LD+ +ALD + +V+Q L + +R + SVLL++ +
Sbjct: 155 LSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQH 214
Query: 192 PNEITKLAQTFLFLNNGVI 210
+ + + A LFL G I
Sbjct: 215 LS-LVEQADHILFLEGGAI 232
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 62.4 bits (150), Expect = 5e-11
Identities = 43/210 (20%), Positives = 95/210 (44%), Gaps = 24/210 (11%)
Query: 21 IDLEIKEAEVVALLGESGAGKSTILRILAGLEAVNSGYIEVNHSVWLDTQKKIFLKPQQR 80
+ + + + +V ++G +G+GKST++ ++ G + G + + D K +
Sbjct: 26 VSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENK---DITNKEPAELYHY 82
Query: 81 KIGFVFQDYALFPHLNVYQNIAFAH-----------------PKDKN---KIHEVLRLMR 120
I FQ + V +N+ PK++ K ++L ++
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 142
Query: 121 LENLSQQKILQLSGGQAQRVALARALIAAKNLLLLDEPLNALDNALKNEVQQGLLDFIKR 180
L +L +K +LSGGQ + V + RAL+ ++++DEP+ + L +++ +L+ +K
Sbjct: 143 LSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLE-LKA 201
Query: 181 ENLSVLLVSHNPNEITKLAQTFLFLNNGVI 210
+ ++ L++ H + + + NG I
Sbjct: 202 KGITFLIIEHRLDIVLNYIDHLYVMFNGQI 231
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 61.2 bits (147), Expect = 1e-10
Identities = 42/210 (20%), Positives = 95/210 (45%), Gaps = 24/210 (11%)
Query: 21 IDLEIKEAEVVALLGESGAGKSTILRILAGLEAVNSGYIEVNHSVWLDTQKKIFLKPQQR 80
+ + + + +V ++G +G+GKST++ ++ G + G + + D K +
Sbjct: 26 VSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENK---DITNKEPAELYHY 82
Query: 81 KIGFVFQDYALFPHLNVYQNIAFAH-----------------PKDKN---KIHEVLRLMR 120
I FQ + V +N+ PK++ K ++L ++
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 142
Query: 121 LENLSQQKILQLSGGQAQRVALARALIAAKNLLLLDEPLNALDNALKNEVQQGLLDFIKR 180
L +L +K +LSGGQ + V + RAL+ ++++D+P+ + L +++ +L+ +K
Sbjct: 143 LSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLE-LKA 201
Query: 181 ENLSVLLVSHNPNEITKLAQTFLFLNNGVI 210
+ ++ L++ H + + + NG I
Sbjct: 202 KGITFLIIEHRLDIVLNYIDHLYVMFNGQI 231
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 60.8 bits (146), Expect = 2e-10
Identities = 56/201 (27%), Positives = 94/201 (45%), Gaps = 29/201 (14%)
Query: 24 EIKEAEVVALLGESGAGKSTILRILAGLEAVNSGYIEVNH---SVWLDTQ---KKIFLKP 77
E++ E++ L+G +GAGKST+L AG + G I+ W T+ + +L
Sbjct: 22 EVRAGEILHLVGPNGAGKSTLLARXAGXTS-GKGSIQFAGQPLEAWSATKLALHRAYLSQ 80
Query: 78 QQRKIGFVFQDYALFPHLNVYQNIAFAHPKDKNK---IHEVLRLMRLENLSQQKILQLSG 134
QQ P + H DK + +++V + L++ + QLSG
Sbjct: 81 QQTP-----------PFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSG 129
Query: 135 GQAQRVALARALI-------AAKNLLLLDEPLNALDNALKNEVQQGLLDFIKRENLSVLL 187
G+ QRV LA ++ A LLLLDEP N+LD A ++ + + +L + ++ L+++
Sbjct: 130 GEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDK-ILSALCQQGLAIVX 188
Query: 188 VSHNPNEITKLAQTFLFLNNG 208
SH+ N + A L G
Sbjct: 189 SSHDLNHTLRHAHRAWLLKGG 209
>pdb|1II8|B Chain B, Crystal Structure Of The P. Furiosus Rad50 Atpase Domain
Length = 174
Score = 30.0 bits (66), Expect = 0.28
Identities = 26/90 (28%), Positives = 48/90 (52%), Gaps = 11/90 (12%)
Query: 108 DKNKIHEVLRLMRLENLSQQKILQLSGGQ------AQRVALARALIAAKNLLLLDEPLNA 161
++NK+ RL + ++ + LSGG+ A R+A++ L +LL+LDEP
Sbjct: 64 EENKV----RLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPY 119
Query: 162 LDNALKNEVQQGLLDFIKRENLSVLLVSHN 191
LD + ++ + ++K+ V+LVSH+
Sbjct: 120 LDEERRRKLITIMERYLKKIP-QVILVSHD 148
>pdb|1F2U|B Chain B, Crystal Structure Of Rad50 Abc-Atpase
pdb|1F2T|B Chain B, Crystal Structure Of Atp-Free Rad50 Abc-Atpase
pdb|1F2U|D Chain D, Crystal Structure Of Rad50 Abc-Atpase
Length = 148
Score = 30.0 bits (66), Expect = 0.28
Identities = 26/90 (28%), Positives = 48/90 (52%), Gaps = 11/90 (12%)
Query: 108 DKNKIHEVLRLMRLENLSQQKILQLSGGQ------AQRVALARALIAAKNLLLLDEPLNA 161
++NK+ RL + ++ + LSGG+ A R+A++ L +LL+LDEP
Sbjct: 38 EENKV----RLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPY 93
Query: 162 LDNALKNEVQQGLLDFIKRENLSVLLVSHN 191
LD + ++ + ++K+ V+LVSH+
Sbjct: 94 LDEERRRKLITIMERYLKKIP-QVILVSHD 122
>pdb|1CHD| Cheb Methylesterase Domain
Length = 203
Score = 27.3 bits (59), Expect = 1.8
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 101 IAFAHPKDKNKIHEVLRLMRLENLSQQKILQLSGGQAQRV 140
+ F P++ + V ++ L +SQQ + ++S GQA R+
Sbjct: 164 VVFGMPREAINMGGVSEVVDLSQVSQQMLAKISAGQAIRI 203
>pdb|1A2O|A Chain A, Structural Basis For Methylesterase Cheb Regulation By A
Phosphorylation-Activated Domain
pdb|1A2O|B Chain B, Structural Basis For Methylesterase Cheb Regulation By A
Phosphorylation-Activated Domain
Length = 349
Score = 27.3 bits (59), Expect = 1.8
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 101 IAFAHPKDKNKIHEVLRLMRLENLSQQKILQLSGGQAQRV 140
+ F P++ + V ++ L +SQQ + ++S GQA R+
Sbjct: 310 VVFGMPREAINMGGVSEVVDLSQVSQQMLAKISAGQAIRI 349
>pdb|1GZ0|A Chain A, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
pdb|1GZ0|B Chain B, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
pdb|1GZ0|C Chain C, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
pdb|1GZ0|D Chain D, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
pdb|1GZ0|E Chain E, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
pdb|1GZ0|F Chain F, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
pdb|1GZ0|G Chain G, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
pdb|1GZ0|H Chain H, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
Length = 253
Score = 27.3 bits (59), Expect = 1.8
Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 12/107 (11%)
Query: 112 IHEVLRLMRLENLSQQKILQLSGGQAQRVALARALIAAKNLLLLDEPLNALDNALKNEVQ 171
IH V L+ Q++ L G + +R+ + ++ +++ LD V
Sbjct: 18 IHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEKSDGAVH 77
Query: 172 QGLLDFIK-----RENLSVLLVSHNPNEITKLAQTFLFLNNGVIDPN 213
QG++ +K +EN P+ I L Q FL + +GV DP+
Sbjct: 78 QGIIARVKPGRQYQEN-------DLPDLIASLDQPFLLILDGVTDPH 117
>pdb|4BLM|A Chain A, Beta-Lactamase (E.C.3.5.2.6) (Penicillinase)
pdb|4BLM|B Chain B, Beta-Lactamase (E.C.3.5.2.6) (Penicillinase)
pdb|2BLM|A Chain A, Beta-Lactamase (Penicillinase) (E.C.3.5.2.6)
pdb|2BLM|B Chain B, Beta-Lactamase (Penicillinase) (E.C.3.5.2.6)
Length = 265
Score = 26.2 bits (56), Expect = 4.1
Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Query: 126 QQKILQLSGGQAQRVALARALIAAKNLLLLDEPLNALDNALKNEVQQGLLDFIKRENLSV 185
+ ++ +++ G+ Q + ARAL+ + AL++ L +E ++ L+D++KR
Sbjct: 138 EPELNEVNPGETQDTSTARALVTSLRAF-------ALEDKLPSEKRELLIDWMKRNTTGD 190
Query: 186 LLV 188
L+
Sbjct: 191 ALI 193
>pdb|1MBL|A Chain A, Beta-Lactamase (E.C.3.5.2.6) Mutant With Glu 166 Replaced
By Ala (E166a)
pdb|1MBL|B Chain B, Beta-Lactamase (E.C.3.5.2.6) Mutant With Glu 166 Replaced
By Ala (E166a)
Length = 256
Score = 25.8 bits (55), Expect = 5.4
Identities = 15/58 (25%), Positives = 31/58 (52%), Gaps = 7/58 (12%)
Query: 131 QLSGGQAQRVALARALIAAKNLLLLDEPLNALDNALKNEVQQGLLDFIKRENLSVLLV 188
+++ G+ Q + ARAL+ + AL++ L +E ++ L+D++KR L+
Sbjct: 138 EVNPGETQDTSTARALVTSLRAF-------ALEDKLPSEKRELLIDWMKRNTTGDALI 188
>pdb|1D2S|A Chain A, Crystal Structure Of The N-Terminal Laminin G-Like Domain
Of Shbg In Complex With Dihydrotestosterone
Length = 170
Score = 25.8 bits (55), Expect = 5.4
Identities = 17/52 (32%), Positives = 26/52 (49%), Gaps = 2/52 (3%)
Query: 118 LMRLENLSQQKILQLSGGQAQRVALARALIAAKNLLLLDEPLNALDNALKNE 169
L+ ++ ++ Q+SG R+AL L A NL L P ALD L+ +
Sbjct: 101 LLEVDGEEVLRLRQVSGHPIMRIALGGLLFPASNLRLPLVP--ALDGCLRRD 150
>pdb|1JVN|A Chain A, Crystal Structure Of Imidazole Glycerol Phosphate
Synthase: A Tunnel Through A (BetaALPHA)8 BARREL JOINS
TWO ACTIVE Sites
pdb|1JVN|B Chain B, Crystal Structure Of Imidazole Glycerol Phosphate
Synthase: A Tunnel Through A (BetaALPHA)8 BARREL JOINS
TWO ACTIVE Sites
Length = 555
Score = 25.4 bits (54), Expect = 7.0
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 12 GSRGAFDLNIDLEIKEAEVVALLGESGAG 40
GS +DL + +K+A + ++ SGAG
Sbjct: 478 GSNSGYDLELIEHVKDAVKIPVIASSGAG 506
>pdb|1KZH|A Chain A, Structure Of A Pyrophosphate-Dependent Phosphofructokinase
From The Lyme Disease Spirochete Borrelia Burgdorferi
pdb|1KZH|B Chain B, Structure Of A Pyrophosphate-Dependent Phosphofructokinase
From The Lyme Disease Spirochete Borrelia Burgdorferi
Length = 555
Score = 25.4 bits (54), Expect = 7.0
Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Query: 130 LQLSGGQAQRVALARALIAAKNLLLLDEPLNALDNALKNEVQQGLLDFIKR----ENLSV 185
++L G A VAL AL N+ ++ E + A L + + + +KR +N V
Sbjct: 248 VKLMGRSASHVALECALKTHPNICIVSEEVLAKKKTLSEIIDEMVSVILKRSLNGDNFGV 307
Query: 186 LLVSHNPNEITKLAQTFLFLNNGVIDPNQ 214
++V E ++ + + D N+
Sbjct: 308 VIVPEGLIEFIPEVKSLMLELCDIFDKNE 336
>pdb|1JEC|A Chain A, Crystal Structure Of Atp Sulfurylase In Complex With
Thiosulfate
pdb|1JEE|A Chain A, Crystal Structure Of Atp Sulfurylase In Complex With
Chlorate
pdb|1JEE|B Chain B, Crystal Structure Of Atp Sulfurylase In Complex With
Chlorate
pdb|1JED|A Chain A, Crystal Structure Of Atp Sulfurylase In Complex With Adp
pdb|1JED|B Chain B, Crystal Structure Of Atp Sulfurylase In Complex With Adp
Length = 510
Score = 25.4 bits (54), Expect = 7.0
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 16/53 (30%)
Query: 178 IKRENLSVLLVS----------------HNPNEITKLAQTFLFLNNGVIDPNQ 214
+ RE LS+ L+S +N E+ L Q F+ +G+I PNQ
Sbjct: 405 VSREQLSIALLSTFLQFGGGRYYKIFEHNNKTELLSLIQDFIGSGSGLIIPNQ 457
>pdb|1HO3|A Chain A, Crystal Structure Analysis Of E. Coli L-Asparaginase Ii
(Y25f Mutant)
pdb|1HO3|B Chain B, Crystal Structure Analysis Of E. Coli L-Asparaginase Ii
(Y25f Mutant)
Length = 326
Score = 25.0 bits (53), Expect = 9.1
Identities = 11/24 (45%), Positives = 15/24 (61%)
Query: 50 GLEAVNSGYIEVNHSVWLDTQKKI 73
G + VN G ++N +VWL KKI
Sbjct: 50 GEQVVNIGSQDMNDNVWLTLAKKI 73
>pdb|1G8P|A Chain A, Crystal Structure Of Bchi Subunit Of Magnesium Chelatase
Length = 350
Score = 25.0 bits (53), Expect = 9.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 31 VALLGESGAGKSTILRILAGL 51
V + G+ G GKST +R LA L
Sbjct: 48 VLVFGDRGTGKSTAVRALAAL 68
>pdb|1MWX|A Chain A, Structure Of Penicillin Binding Protein 2a From
Methicillin Resistant Staphylococcus Aureus Strain 27r
At 1.80 A Resolution.
pdb|1MWX|B Chain B, Structure Of Penicillin Binding Protein 2a From
Methicillin Resistant Staphylococcus Aureus Strain 27r
At 1.80 A Resolution
Length = 646
Score = 25.0 bits (53), Expect = 9.1
Identities = 17/81 (20%), Positives = 31/81 (37%)
Query: 166 LKNEVQQGLLDFIKRENLSVLLVSHNPNEITKLAQTFLFLNNGVIDPNQENRLFSNRLLI 225
+ NE L + K L+ ++ +P K+ + LNN +D ++
Sbjct: 353 MSNEEYNKLTEDKKEPLLNKFQITTSPGSTQKILTAMIGLNNKTLDDKTSYKIDGKGWQK 412
Query: 226 KPLFEDENYCHYEVISQTISL 246
+ N YEV++ I L
Sbjct: 413 DKSWGGYNVTRYEVVNGNIDL 433
>pdb|4ECA|A Chain A, Asparaginase From E. Coli, Mutant T89v With Covalently
Bound Aspartate
pdb|4ECA|B Chain B, Asparaginase From E. Coli, Mutant T89v With Covalently
Bound Aspartate
pdb|4ECA|C Chain C, Asparaginase From E. Coli, Mutant T89v With Covalently
Bound Aspartate
pdb|4ECA|D Chain D, Asparaginase From E. Coli, Mutant T89v With Covalently
Bound Aspartate
Length = 326
Score = 25.0 bits (53), Expect = 9.1
Identities = 11/24 (45%), Positives = 15/24 (61%)
Query: 50 GLEAVNSGYIEVNHSVWLDTQKKI 73
G + VN G ++N +VWL KKI
Sbjct: 50 GEQVVNIGSQDMNDNVWLTLAKKI 73
>pdb|1G8Y|A Chain A, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|B Chain B, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|C Chain C, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|D Chain D, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|E Chain E, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|F Chain F, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|G Chain G, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|H Chain H, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|I Chain I, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|J Chain J, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|K Chain K, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|L Chain L, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
Length = 279
Score = 25.0 bits (53), Expect = 9.1
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 30 VVALLGESGAGKSTILRILAGLEAVNSGYIEVNHSVWLDTQKKIFLKPQQRKIGFVFQDY 89
V AL+ GAGKS + LA A +EV L T I+L + + +
Sbjct: 32 VGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGE---LPTGPVIYLPAEDPPTAIHHRLH 88
Query: 90 ALFPHLNVYQNIAFA 104
AL HL+ + A A
Sbjct: 89 ALGAHLSAEERQAVA 103
>pdb|3ECA|A Chain A, Asparaginase Type Ii (E.C.3.5.1.1) (Eca)
pdb|3ECA|B Chain B, Asparaginase Type Ii (E.C.3.5.1.1) (Eca)
pdb|3ECA|C Chain C, Asparaginase Type Ii (E.C.3.5.1.1) (Eca)
pdb|3ECA|D Chain D, Asparaginase Type Ii (E.C.3.5.1.1) (Eca)
Length = 326
Score = 25.0 bits (53), Expect = 9.1
Identities = 11/24 (45%), Positives = 15/24 (61%)
Query: 50 GLEAVNSGYIEVNHSVWLDTQKKI 73
G + VN G ++N +VWL KKI
Sbjct: 50 GEQVVNIGSQDMNDNVWLTLAKKI 73
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.321 0.139 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,386,981
Number of Sequences: 13198
Number of extensions: 52880
Number of successful extensions: 337
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 305
Number of HSP's gapped (non-prelim): 28
length of query: 265
length of database: 2,899,336
effective HSP length: 87
effective length of query: 178
effective length of database: 1,751,110
effective search space: 311697580
effective search space used: 311697580
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)