BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645104|ref|NP_207274.1| glutamyl-tRNA synthetase
(gltX) [Helicobacter pylori 26695]
(463 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1G59|A Chain A, Glutamyl-Trna Synthetase Complexed With... 275 6e-75
pdb|1QTQ|A Chain A, Glutaminyl-Trna Synthetase Complexed Wi... 73 8e-14
pdb|1QRT|A Chain A, Glutaminyl-Trna Synthetase Mutant D235g... 73 8e-14
pdb|1QRS|A Chain A, Glutaminyl-Trna Synthetase Mutant D235n... 73 8e-14
pdb|1EXD|A Chain A, Crystal Structure Of A Tight-Binding Gl... 73 8e-14
pdb|1QRU|A Chain A, Glutaminyl-Trna Synthetase Mutant I129t... 72 2e-13
pdb|1DJ2|A Chain A, Structures Of Adenylosuccinate Syntheta... 30 0.75
pdb|1D7M|A Chain A, Coiled-Coil Dimerization Domain From Co... 28 1.7
pdb|1JIL|A Chain A, Crystal Structure Of S. Aureus Tyrrs In... 28 2.2
pdb|1JZS|A Chain A, Isoleucyl-Trna Synthetase Complexed Wit... 27 6.4
pdb|1VIW|B Chain B, Tenebrio Molitor Alpha-Amylase-Inhibito... 26 8.3
pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophil... 26 8.3
pdb|1DHK|B Chain B, Structure Of Porcine Pancreatic Alpha-A... 26 8.3
>pdb|1G59|A Chain A, Glutamyl-Trna Synthetase Complexed With Trna(Glu).
pdb|1G59|C Chain C, Glutamyl-Trna Synthetase Complexed With Trna(Glu).
pdb|1GLN| Mol_id: 1; Molecule: Glutamyl-Trna Synthetase; Chain: Null
Length = 468
Score = 275 bits (704), Expect = 6e-75
Identities = 168/475 (35%), Positives = 264/475 (55%), Gaps = 30/475 (6%)
Query: 3 LIVTRFAPSPTGYLHIGGLRTAIFNYLFARANQGKFFLRIEDTDLSRNSIEAANAIIEAF 62
++VTR APSPTG H+G A+FNY +AR N G+F +RIEDTD +R A I+ A
Sbjct: 1 MVVTRIAPSPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAAL 60
Query: 63 KWVGLEYDGEI--------LYQSKRFEIYKEYIQKLLDEDKAYYCYMSKEELDALREEQK 114
KW+GL YD QS+R +Y++Y ++LL AY + + EEL+ +R+E+
Sbjct: 61 KWLGLSYDEGPDVAAPTGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKG 120
Query: 115 ARKETPRYDNRYRDFKGTPPKGIEP--------VVRIKVPQNEVIGFNDGVKGEVKVNTN 166
YD R R+ PP+ E V+R+KVP+ D ++G V +
Sbjct: 121 G------YDGRARNI---PPEEAEERARRGEPHVIRLKVPRPGTTEVKDELRGVVVYDNQ 171
Query: 167 ELDDFIIARSDGTPTYNFVVTIDDALMGITDVIRGDDHLSNTPKQIVLYKALNFKIPNFF 226
E+ D ++ +SDG PTY+ +DD LMG+TDVIR ++ L +TP ++LY+A ++ P F+
Sbjct: 172 EIPDVVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAPRFY 231
Query: 227 HVPMILNEEGQKLSKRHGATNVMDYQEMGYLKEALVNFLARLGWSYQD-KEVFSMQELLE 285
H+P++ N + K+SKR T++ Y+ G+L EAL N+L +G+S D +E+F+++E ++
Sbjct: 232 HMPLLRNPDKTKISKRKSHTSLDWYKAEGFLPEALRNYLCLMGFSMPDGREIFTLEEFIQ 291
Query: 286 LFDPKDLNSSPSCFSWHKLNWLNAHYLKN-QSVQELLKLLKPF-SFSDLSHLNPTQLDRL 343
F + ++ F KL W+N Y++ S++E+ + +KPF + LS + L R
Sbjct: 292 AFTWERVSLGGPVFDLEKLRWMNGKYIREVLSLEEVAERVKPFLREAGLSWESEAYLRRA 351
Query: 344 LDALKERSQTLKELALKIDEVLIAPVEYEEKVFKKLNQALVMPLLEKFKLELNKANFNDE 403
++ ++ R TLKE K + EK +KL + L PLL++ L E
Sbjct: 352 VELMRPRFDTLKEFPEKARYLFTEDYPVSEKAQRKLEEGL--PLLKELYPRLRAQEEWTE 409
Query: 404 SALENAMRQIIEEEKIKAGSFMQPLRLALLGKGGGIGLKEALFILGKTESVKRIE 458
+ALE +R E+ +K G QPLR AL G GL E L +LGK +++R+E
Sbjct: 410 AALEALLRGFAAEKGVKLGQVAQPLRAALTGSLETPGLFEILALLGKERALRRLE 464
>pdb|1QTQ|A Chain A, Glutaminyl-Trna Synthetase Complexed With Trna And An
Amino Acid Analog
pdb|1GTR|A Chain A, Glutaminyl-Trna Synthetase (E.C.6.1.1.18) Complexed With
Trna And Atp (-8 Degrees C)
pdb|1GTS|A Chain A, Glutaminyl-Trna Synthetase (E.C.6.1.1.18) Complexed With
Trna And Amp (8 Degrees C)
pdb|1GSG|P Chain P, Glutaminyl-TRNA Synthetase (GlnRS) Complex With tRNAGln
And ATP
Length = 553
Score = 72.8 bits (177), Expect = 8e-14
Identities = 55/209 (26%), Positives = 92/209 (43%), Gaps = 30/209 (14%)
Query: 6 TRFAPSPTGYLHIGGLRTAIFNYLFARANQGKFFLRIEDTDLSRNSIEAANAIIEAFKWV 65
TRF P P GYLHIG ++ N+ A+ +G+ LR +DT+ + IE +I +W+
Sbjct: 29 TRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVEWL 88
Query: 66 GLEYDGEILYQSKRFEIYKEYIQKLLDEDKAYYCYMSKEELDALREEQKARKETPRYDNR 125
G + G + Y S F+ Y +L+++ AY ++ E++ E + P ++
Sbjct: 89 GFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQI----REYRGTLTQPGKNSP 144
Query: 126 YRDFKGTPPKGIEPVVRIKVPQNEVIGFNDGVKGEVKVNTNELDDFIIARSDGT------ 179
YRD + +E + + + GF +G K ++ + FI+ R
Sbjct: 145 YRD------RSVEENLAL-FEKMRAGGFEEG-KACLRAKIDMASPFIVMRDPVLYRIKFA 196
Query: 180 ------------PTYNFVVTIDDALMGIT 196
P Y+F I DAL GIT
Sbjct: 197 EHHQTGNKWCIYPMYDFTHCISDALEGIT 225
>pdb|1QRT|A Chain A, Glutaminyl-Trna Synthetase Mutant D235g Complexed With
Glutamine Transfer Rna
Length = 553
Score = 72.8 bits (177), Expect = 8e-14
Identities = 55/209 (26%), Positives = 92/209 (43%), Gaps = 30/209 (14%)
Query: 6 TRFAPSPTGYLHIGGLRTAIFNYLFARANQGKFFLRIEDTDLSRNSIEAANAIIEAFKWV 65
TRF P P GYLHIG ++ N+ A+ +G+ LR +DT+ + IE +I +W+
Sbjct: 29 TRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVEWL 88
Query: 66 GLEYDGEILYQSKRFEIYKEYIQKLLDEDKAYYCYMSKEELDALREEQKARKETPRYDNR 125
G + G + Y S F+ Y +L+++ AY ++ E++ E + P ++
Sbjct: 89 GFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQI----REYRGTLTQPGKNSP 144
Query: 126 YRDFKGTPPKGIEPVVRIKVPQNEVIGFNDGVKGEVKVNTNELDDFIIARSDGT------ 179
YRD + +E + + + GF +G K ++ + FI+ R
Sbjct: 145 YRD------RSVEENLAL-FEKMRAGGFEEG-KACLRAKIDMASPFIVMRDPVLYRIKFA 196
Query: 180 ------------PTYNFVVTIDDALMGIT 196
P Y+F I DAL GIT
Sbjct: 197 EHHQTGNKWCIYPMYDFTHCISDALEGIT 225
>pdb|1QRS|A Chain A, Glutaminyl-Trna Synthetase Mutant D235n Complexed With
Glutamine Transfer Rna
Length = 553
Score = 72.8 bits (177), Expect = 8e-14
Identities = 55/209 (26%), Positives = 92/209 (43%), Gaps = 30/209 (14%)
Query: 6 TRFAPSPTGYLHIGGLRTAIFNYLFARANQGKFFLRIEDTDLSRNSIEAANAIIEAFKWV 65
TRF P P GYLHIG ++ N+ A+ +G+ LR +DT+ + IE +I +W+
Sbjct: 29 TRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVEWL 88
Query: 66 GLEYDGEILYQSKRFEIYKEYIQKLLDEDKAYYCYMSKEELDALREEQKARKETPRYDNR 125
G + G + Y S F+ Y +L+++ AY ++ E++ E + P ++
Sbjct: 89 GFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQI----REYRGTLTQPGKNSP 144
Query: 126 YRDFKGTPPKGIEPVVRIKVPQNEVIGFNDGVKGEVKVNTNELDDFIIARSDGT------ 179
YRD + +E + + + GF +G K ++ + FI+ R
Sbjct: 145 YRD------RSVEENLAL-FEKMRAGGFEEG-KACLRAKIDMASPFIVMRDPVLYRIKFA 196
Query: 180 ------------PTYNFVVTIDDALMGIT 196
P Y+F I DAL GIT
Sbjct: 197 EHHQTGNKWCIYPMYDFTHCISDALEGIT 225
>pdb|1EXD|A Chain A, Crystal Structure Of A Tight-Binding Glutamine Trna Bound
To Glutamine Aminoacyl Trna Synthetase
pdb|1EUQ|A Chain A, Crystal Structure Of Glutaminyl-Trna Synthetase Complexed
With A Trna-Gln Mutant And An Active-Site Inhibitor
pdb|1EUY|A Chain A, Glutaminyl-Trna Synthetase Complexed With A Trna Mutant
And An Active Site Inhibitor
Length = 548
Score = 72.8 bits (177), Expect = 8e-14
Identities = 55/209 (26%), Positives = 92/209 (43%), Gaps = 30/209 (14%)
Query: 6 TRFAPSPTGYLHIGGLRTAIFNYLFARANQGKFFLRIEDTDLSRNSIEAANAIIEAFKWV 65
TRF P P GYLHIG ++ N+ A+ +G+ LR +DT+ + IE +I +W+
Sbjct: 30 TRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVEWL 89
Query: 66 GLEYDGEILYQSKRFEIYKEYIQKLLDEDKAYYCYMSKEELDALREEQKARKETPRYDNR 125
G + G + Y S F+ Y +L+++ AY ++ E++ E + P ++
Sbjct: 90 GFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQI----REYRGTLTQPGKNSP 145
Query: 126 YRDFKGTPPKGIEPVVRIKVPQNEVIGFNDGVKGEVKVNTNELDDFIIARSDGT------ 179
YRD + +E + + + GF +G K ++ + FI+ R
Sbjct: 146 YRD------RSVEENLAL-FEKMRAGGFEEG-KACLRAKIDMASPFIVMRDPVLYRIKFA 197
Query: 180 ------------PTYNFVVTIDDALMGIT 196
P Y+F I DAL GIT
Sbjct: 198 EHHQTGNKWCIYPMYDFTHCISDALEGIT 226
>pdb|1QRU|A Chain A, Glutaminyl-Trna Synthetase Mutant I129t Complexed With
Glutamine Transfer Rna
Length = 553
Score = 71.6 bits (174), Expect = 2e-13
Identities = 55/209 (26%), Positives = 91/209 (43%), Gaps = 30/209 (14%)
Query: 6 TRFAPSPTGYLHIGGLRTAIFNYLFARANQGKFFLRIEDTDLSRNSIEAANAIIEAFKWV 65
TRF P P GYLHIG ++ N+ A+ +G+ LR +DT+ + IE +I +W+
Sbjct: 29 TRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVEWL 88
Query: 66 GLEYDGEILYQSKRFEIYKEYIQKLLDEDKAYYCYMSKEELDALREEQKARKETPRYDNR 125
G + G + Y S F+ Y +L+++ AY ++ E+ E + P ++
Sbjct: 89 GFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQ----TREYRGTLTQPGKNSP 144
Query: 126 YRDFKGTPPKGIEPVVRIKVPQNEVIGFNDGVKGEVKVNTNELDDFIIARSDGT------ 179
YRD + +E + + + GF +G K ++ + FI+ R
Sbjct: 145 YRD------RSVEENLAL-FEKMRAGGFEEG-KACLRAKIDMASPFIVMRDPVLYRIKFA 196
Query: 180 ------------PTYNFVVTIDDALMGIT 196
P Y+F I DAL GIT
Sbjct: 197 EHHQTGNKWCIYPMYDFTHCISDALEGIT 225
>pdb|1DJ2|A Chain A, Structures Of Adenylosuccinate Synthetase From Triticum
Aestivum And Arabidopsis Thaliana
pdb|1DJ2|B Chain B, Structures Of Adenylosuccinate Synthetase From Triticum
Aestivum And Arabidopsis Thaliana
Length = 443
Score = 29.6 bits (65), Expect = 0.75
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 11/62 (17%)
Query: 89 KLLDEDKAYYCYMSKEELDALREEQKARKETPRYDNRYRDFKGTPPKGIEPVVRIKVPQN 148
++L D+A+ + +E+D LRE + A + F GT +GI P KV +N
Sbjct: 115 RILVSDRAHLLFDFHQEVDGLRESELA-----------KSFIGTTKRGIGPAYSSKVIRN 163
Query: 149 EV 150
+
Sbjct: 164 GI 165
>pdb|1D7M|A Chain A, Coiled-Coil Dimerization Domain From Cortexillin I
pdb|1D7M|B Chain B, Coiled-Coil Dimerization Domain From Cortexillin I
Length = 101
Score = 28.5 bits (62), Expect = 1.7
Identities = 24/71 (33%), Positives = 36/71 (49%), Gaps = 5/71 (7%)
Query: 339 QLDRLLDALK----ERSQTLKELALKIDEVLIAPVEYEEKVFKKLNQALVMPLLEKFKLE 394
QL+ LL +L+ ER + L+EL K+DE L +E E+ +L L ++ LE
Sbjct: 29 QLNSLLASLESEGAEREKRLRELEAKLDETL-KNLELEKLARMELEARLAKTEKDRAILE 87
Query: 395 LNKANFNDESA 405
L A DE +
Sbjct: 88 LKLAEAIDEKS 98
>pdb|1JIL|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With
Sb284485
pdb|1JIK|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With Sb-
243545
pdb|1JII|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With Sb-
219383
pdb|1JIJ|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With Sb-
239629
Length = 420
Score = 28.1 bits (61), Expect = 2.2
Identities = 28/106 (26%), Positives = 50/106 (46%), Gaps = 10/106 (9%)
Query: 314 NQSVQELLKLLKPFSFSDLSHLNPTQLDRLLDALKERSQTLKELALKIDEVLIAPVEYEE 373
NQS ++++K LK F+F L ++DR L+ K + L+E + E + + E+
Sbjct: 258 NQSDEDVIKFLKYFTF-----LGKEEIDR-LEQSKNEAPHLREAQKTLAEEVTKFIHGED 311
Query: 374 KVFK--KLNQALVMPLLEKFKLELNKANFND--ESALENAMRQIIE 415
+ +++QAL L+ + K F D + L N I+E
Sbjct: 312 ALNDAIRISQALFSGDLKSLSAKELKDGFKDVPQVTLSNDTTNIVE 357
>pdb|1JZS|A Chain A, Isoleucyl-Trna Synthetase Complexed With Mupirocin
pdb|1ILE| Isoleucyl-Trna Synthetase
pdb|1JZQ|A Chain A, Isoleucyl-Trna Synthetase Complexed With Isoleucyl-
Adenylate Analogue
Length = 821
Score = 26.6 bits (57), Expect = 6.4
Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 4/39 (10%)
Query: 212 IVLYKALNFKIPNFFHVPMILNEEGQKLSKRHGATNVMD 250
++L+ ++ FK N +IL+E+GQK+SK G NV+D
Sbjct: 567 VMLFGSIAFK--NVICHGLILDEKGQKMSKSKG--NVVD 601
>pdb|1VIW|B Chain B, Tenebrio Molitor Alpha-Amylase-Inhibitor Complex
Length = 198
Score = 26.2 bits (56), Expect = 8.3
Identities = 13/29 (44%), Positives = 18/29 (61%)
Query: 44 DTDLSRNSIEAANAIIEAFKWVGLEYDGE 72
DT LSR SI+ N I++ W +YDG+
Sbjct: 96 DTFLSRISIDVNNNDIKSVPWDVHDYDGQ 124
>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1GAX|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
Length = 862
Score = 26.2 bits (56), Expect = 8.3
Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 2/25 (8%)
Query: 230 MILNEEGQKLSKRHGATNVMDYQEM 254
++L+E+GQK+SK G NV+D EM
Sbjct: 520 LVLDEKGQKMSKSKG--NVIDPLEM 542
>pdb|1DHK|B Chain B, Structure Of Porcine Pancreatic Alpha-Amylase
Length = 223
Score = 26.2 bits (56), Expect = 8.3
Identities = 13/29 (44%), Positives = 18/29 (61%)
Query: 44 DTDLSRNSIEAANAIIEAFKWVGLEYDGE 72
DT LSR SI+ N I++ W +YDG+
Sbjct: 103 DTFLSRISIDVNNNDIKSVPWDVHDYDGQ 131
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.138 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,678,801
Number of Sequences: 13198
Number of extensions: 115700
Number of successful extensions: 356
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 336
Number of HSP's gapped (non-prelim): 15
length of query: 463
length of database: 2,899,336
effective HSP length: 91
effective length of query: 372
effective length of database: 1,698,318
effective search space: 631774296
effective search space used: 631774296
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)