BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645106|ref|NP_207276.1| adenine specific DNA
methyltransferase (VSPIM) [Helicobacter pylori 26695]
(545 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1DQ3|A Chain A, Crystal Structure Of An Archaeal Intein... 30 0.69
pdb|2ADM|A Chain A, Adenine-N6-Dna-Methyltransferase Taqi >... 28 2.6
pdb|1AQJ|B Chain B, Structure Of Adenine-N6-Dna-Methyltrans... 28 2.6
pdb|1G38|A Chain A, Adenine-Specific Methyltransferase M. T... 28 2.6
pdb|1AHU|A Chain A, Structure Of The Octameric Flavoenzyme ... 27 4.5
pdb|1KI1|B Chain B, Guanine Nucleotide Exchange Region Of I... 27 4.5
pdb|1E0Y|A Chain A, Structure Of The D170sT457E DOUBLE MUTA... 27 5.8
pdb|1E8G|A Chain A, Structure Of The H61t Double Mutant Of ... 27 5.8
pdb|1DZN|B Chain B, Asp170ser Mutant Of Vanillyl-Alcohol Ox... 27 5.8
pdb|1QLT|A Chain A, Structure Of The H422a Mutant Of The Fl... 27 5.8
>pdb|1DQ3|A Chain A, Crystal Structure Of An Archaeal Intein-Encoded Homing
Endonuclease Pi-Pfui
Length = 454
Score = 30.0 bits (66), Expect = 0.69
Identities = 25/76 (32%), Positives = 38/76 (49%), Gaps = 10/76 (13%)
Query: 4 NALLIEEITHLINVSHSSVHNWIKTNLLEKLE---IDHKIYVKTSSFLDFCRNHLGKNKL 60
N LIE++TH +N IK + EKL ID+ ++V+ S L +GKN
Sbjct: 265 NKRLIEDVTHYLNAL------GIKARIREKLRKDGIDYVLHVEEYSSLLRFYELIGKNLQ 318
Query: 61 NKYANKSL-KGVHNHQ 75
N+ + L K + NH+
Sbjct: 319 NEEKREKLEKVLSNHK 334
>pdb|2ADM|A Chain A, Adenine-N6-Dna-Methyltransferase Taqi
pdb|2ADM|B Chain B, Adenine-N6-Dna-Methyltransferase Taqi
pdb|1AQI|A Chain A, Structure Of Adenine-N6-Dna-Methyltransferase Taqi
pdb|1AQI|B Chain B, Structure Of Adenine-N6-Dna-Methyltransferase Taqi
Length = 421
Score = 28.1 bits (61), Expect = 2.6
Identities = 29/123 (23%), Positives = 51/123 (40%), Gaps = 10/123 (8%)
Query: 193 DFLNLKHTPQFDCIFTNPPWG-----KKYN----QNQKENFKQQFNL-SQSLDSASLFFI 242
DFL + FD I NPP+G KY + K+ +K+ F+ + F
Sbjct: 89 DFLLWEPGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLE 148
Query: 243 ASLNCLKENAHLGLLLPESCLNIDAFKKMREMALKFHIRSLIDFDKPFKNLMTKAVGLAL 302
++ LK L ++P + L ++ F +RE + S+ + F AV +
Sbjct: 149 KAVRLLKPGGVLVFVVPATWLVLEDFALLREFLAREGKTSVYYLGEVFPQKKVSAVVIRF 208
Query: 303 KKT 305
+K+
Sbjct: 209 QKS 211
>pdb|1AQJ|B Chain B, Structure Of Adenine-N6-Dna-Methyltransferase Taqi
pdb|1AQJ|A Chain A, Structure Of Adenine-N6-Dna-Methyltransferase Taqi
Length = 421
Score = 28.1 bits (61), Expect = 2.6
Identities = 29/123 (23%), Positives = 51/123 (40%), Gaps = 10/123 (8%)
Query: 193 DFLNLKHTPQFDCIFTNPPWG-----KKYN----QNQKENFKQQFNL-SQSLDSASLFFI 242
DFL + FD I NPP+G KY + K+ +K+ F+ + F
Sbjct: 89 DFLLWEPGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLE 148
Query: 243 ASLNCLKENAHLGLLLPESCLNIDAFKKMREMALKFHIRSLIDFDKPFKNLMTKAVGLAL 302
++ LK L ++P + L ++ F +RE + S+ + F AV +
Sbjct: 149 KAVRLLKPGGVLVFVVPATWLVLEDFALLREFLAREGKTSVYYLGEVFPQKKVSAVVIRF 208
Query: 303 KKT 305
+K+
Sbjct: 209 QKS 211
>pdb|1G38|A Chain A, Adenine-Specific Methyltransferase M. Taq IDNA COMPLEX
pdb|1G38|D Chain D, Adenine-Specific Methyltransferase M. Taq IDNA COMPLEX
Length = 393
Score = 28.1 bits (61), Expect = 2.6
Identities = 29/123 (23%), Positives = 51/123 (40%), Gaps = 10/123 (8%)
Query: 193 DFLNLKHTPQFDCIFTNPPWG-----KKYN----QNQKENFKQQFNL-SQSLDSASLFFI 242
DFL + FD I NPP+G KY + K+ +K+ F+ + F
Sbjct: 69 DFLLWEPGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLE 128
Query: 243 ASLNCLKENAHLGLLLPESCLNIDAFKKMREMALKFHIRSLIDFDKPFKNLMTKAVGLAL 302
++ LK L ++P + L ++ F +RE + S+ + F AV +
Sbjct: 129 KAVRLLKPGGVLVFVVPATWLVLEDFALLREFLAREGKTSVYYLGEVFPQKKVSAVVIRF 188
Query: 303 KKT 305
+K+
Sbjct: 189 QKS 191
>pdb|1AHU|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With P-Cresol
pdb|1AHU|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With P-Cresol
pdb|2VAO|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With Isoeugenol
pdb|2VAO|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With Isoeugenol
pdb|1AHV|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 2-Nitro-P-Cresol
pdb|1AHV|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 2-Nitro-P-Cresol
pdb|1AHZ|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 4-(1-Heptenyl)phenol
pdb|1AHZ|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 4-(1-Heptenyl)phenol
pdb|1VAO|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase
pdb|1VAO|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase
Length = 560
Score = 27.3 bits (59), Expect = 4.5
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 12/53 (22%)
Query: 111 GIYYTPNRIVEQ--LFTLPKDFDVSQAIFCDPAVGSGNFIMHALKLGFKVENI 161
GI+ PN Q L TLPKD D+ QA+ I+ L+LG ++N+
Sbjct: 266 GIWLMPNPRGYQSYLITLPKDGDLKQAV----------DIIRPLRLGMALQNV 308
>pdb|1KI1|B Chain B, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|D Chain D, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 352
Score = 27.3 bits (59), Expect = 4.5
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 53 NHLGKNKLNKYANKSLKGVHNHQELILKYLEILENSSDLEKLGSYYEEELSNATRNLEGI 112
N LG K ++ K K +N + + + L + + LGS +++ + NL+ +
Sbjct: 228 NCLGPRKF-LHSGKLYKAKNNKELYGFLFNDFLLLTQITKPLGSSGTDKVFSPKSNLQYM 286
Query: 113 YYTPNRIVEQLFTLPKDFDVSQAIF 137
Y TP + E L LP D + IF
Sbjct: 287 YKTPIFLNEVLVKLPTDPSGDEPIF 311
>pdb|1E0Y|A Chain A, Structure Of The D170sT457E DOUBLE MUTANT OF
Vanillyl-Alcohol Oxidase
pdb|1E0Y|B Chain B, Structure Of The D170sT457E DOUBLE MUTANT OF
Vanillyl-Alcohol Oxidase
Length = 560
Score = 26.9 bits (58), Expect = 5.8
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 12/53 (22%)
Query: 111 GIYYTPNRIVEQ--LFTLPKDFDVSQAIFCDPAVGSGNFIMHALKLGFKVENI 161
GI+ PN Q L TLPKD D+ QA+ I+ L+LG ++N+
Sbjct: 266 GIWLMPNPGGYQSYLITLPKDGDLKQAV----------DIIRPLRLGMALQNV 308
>pdb|1E8G|A Chain A, Structure Of The H61t Double Mutant Of Vanillyl-Alcohol
Oxidase In Complex With Fluoro-Cresol
pdb|1E8G|B Chain B, Structure Of The H61t Double Mutant Of Vanillyl-Alcohol
Oxidase In Complex With Fluoro-Cresol
pdb|1E8H|A Chain A, Structure Of The H61t Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase In The Apo Form Complexed By
Adp
pdb|1E8H|B Chain B, Structure Of The H61t Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase In The Apo Form Complexed By
Adp
pdb|1E8F|A Chain A, Structure Of The H61t Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase In The Apo Form
pdb|1E8F|B Chain B, Structure Of The H61t Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase In The Apo Form
Length = 560
Score = 26.9 bits (58), Expect = 5.8
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 12/53 (22%)
Query: 111 GIYYTPNRIVEQ--LFTLPKDFDVSQAIFCDPAVGSGNFIMHALKLGFKVENI 161
GI+ PN Q L TLPKD D+ QA+ I+ L+LG ++N+
Sbjct: 266 GIWLMPNPGGYQSYLITLPKDGDLKQAV----------DIIRPLRLGMALQNV 308
>pdb|1DZN|B Chain B, Asp170ser Mutant Of Vanillyl-Alcohol Oxidase
pdb|1DZN|A Chain A, Asp170ser Mutant Of Vanillyl-Alcohol Oxidase
Length = 560
Score = 26.9 bits (58), Expect = 5.8
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 12/53 (22%)
Query: 111 GIYYTPNRIVEQ--LFTLPKDFDVSQAIFCDPAVGSGNFIMHALKLGFKVENI 161
GI+ PN Q L TLPKD D+ QA+ I+ L+LG ++N+
Sbjct: 266 GIWLMPNPGGYQSYLITLPKDGDLKQAV----------DIIRPLRLGMALQNV 308
>pdb|1QLT|A Chain A, Structure Of The H422a Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase
pdb|1QLT|B Chain B, Structure Of The H422a Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase
pdb|1QLU|A Chain A, Structure Of The H422a Mutant Vanillyl-Alcohol Oxidase In
Complex With Isoeugenol
pdb|1QLU|B Chain B, Structure Of The H422a Mutant Vanillyl-Alcohol Oxidase In
Complex With Isoeugenol
Length = 560
Score = 26.9 bits (58), Expect = 5.8
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 12/53 (22%)
Query: 111 GIYYTPNRIVEQ--LFTLPKDFDVSQAIFCDPAVGSGNFIMHALKLGFKVENI 161
GI+ PN Q L TLPKD D+ QA+ I+ L+LG ++N+
Sbjct: 266 GIWLMPNPGGYQSYLITLPKDGDLKQAV----------DIIRPLRLGMALQNV 308
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.322 0.138 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,125,917
Number of Sequences: 13198
Number of extensions: 131466
Number of successful extensions: 243
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 237
Number of HSP's gapped (non-prelim): 15
length of query: 545
length of database: 2,899,336
effective HSP length: 93
effective length of query: 452
effective length of database: 1,671,922
effective search space: 755708744
effective search space used: 755708744
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)