BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645107|ref|NP_207277.1| hypothetical protein
[Helicobacter pylori 26695]
(282 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3BTA|A Chain A, Crystal Structure Of Botulinum Neurotox... 27 2.6
pdb|1KJT|A Chain A, Crystal Structure Of The Gaba(A) Recept... 27 2.6
pdb|1GNU|A Chain A, Gaba(A) Receptor Associated Protein Gab... 27 2.6
pdb|1KOT|A Chain A, Solution Structure Of Human Gaba Recept... 27 2.6
pdb|1PFZ|A Chain A, Proplasmepsin Ii From Plasmodium Falcip... 27 3.4
>pdb|3BTA|A Chain A, Crystal Structure Of Botulinum Neurotoxin Serotype A
Length = 1295
Score = 26.9 bits (58), Expect = 2.6
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 116 KEIKNVYQNRQE--LFSQIYGHV--FDNPPYPMNLKNPKK 151
KEIK++Y N+ + +G +D P Y +NL +P K
Sbjct: 1081 KEIKDLYDNQSNSGILKDFWGDYLQYDKPYYMLNLYDPNK 1120
>pdb|1KJT|A Chain A, Crystal Structure Of The Gaba(A) Receptor Associated
Protein, Gabarap
Length = 119
Score = 26.9 bits (58), Expect = 2.6
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 211 KNLILESDLYIGGDSFLIHLAYYLKKNYFIFFYRDNDDFMPPNS 254
K ++ SDL +G FLI +L+ +FF+ +N +PP S
Sbjct: 49 KKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNN--VIPPTS 90
>pdb|1GNU|A Chain A, Gaba(A) Receptor Associated Protein Gabarap
Length = 117
Score = 26.9 bits (58), Expect = 2.6
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 211 KNLILESDLYIGGDSFLIHLAYYLKKNYFIFFYRDNDDFMPPNS 254
K ++ SDL +G FLI +L+ +FF+ +N +PP S
Sbjct: 47 KKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNN--VIPPTS 88
>pdb|1KOT|A Chain A, Solution Structure Of Human Gaba Receptor Associated
Protein Gabarap
Length = 119
Score = 26.9 bits (58), Expect = 2.6
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 211 KNLILESDLYIGGDSFLIHLAYYLKKNYFIFFYRDNDDFMPPNS 254
K ++ SDL +G FLI +L+ +FF+ +N +PP S
Sbjct: 49 KKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNN--VIPPTS 90
>pdb|1PFZ|A Chain A, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|D Chain D, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|B Chain B, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|C Chain C, Proplasmepsin Ii From Plasmodium Falciparum
Length = 380
Score = 26.6 bits (57), Expect = 3.4
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 81 LLKAIKKHQIKRLILEKQDFRSTFLAKFIPITTPNKEIKNV-YQN 124
+LK IK H++K I E +F ++ L K + + N I+ V +QN
Sbjct: 20 ILKTIKTHKLKNYIKESVNFLNSGLTKTNYLGSSNDNIELVDFQN 64
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.326 0.143 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,610,476
Number of Sequences: 13198
Number of extensions: 66511
Number of successful extensions: 151
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 150
Number of HSP's gapped (non-prelim): 5
length of query: 282
length of database: 2,899,336
effective HSP length: 87
effective length of query: 195
effective length of database: 1,751,110
effective search space: 341466450
effective search space used: 341466450
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)