BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645108|ref|NP_207278.1| GTP-binding protein,
fusA-homolog (yihK) [Helicobacter pylori 26695]
(599 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1ELO| Elongation Factor G Without Nucleotide >gi|1633... 114 4e-26
pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G ... 114 4e-26
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation F... 114 4e-26
pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfata... 96 9e-21
pdb|1EFT| Elongation Factor Tu (Ef-Tu) Complexed With Gua... 93 7e-20
pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus... 93 7e-20
pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophil... 92 2e-19
pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermo... 92 2e-19
pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Re... 80 5e-16
pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor,... 80 5e-16
pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts Fr... 80 5e-16
pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Fac... 80 5e-16
pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-T... 80 6e-16
pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRN... 73 8e-14
pdb|1ETU| Elongation Factor Tu (Domain I) - Guanosine Dip... 72 2e-13
pdb|1EFM| Trypsin-Modified Elongation Factor Tu (EF-Tu-GDP) 71 4e-13
pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongati... 67 4e-12
pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of... 54 5e-08
pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma ... 54 6e-08
pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiati... 53 1e-07
pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiati... 53 1e-07
pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of... 51 3e-07
pdb|1JQS|C Chain C, Fitting Of L11 Protein And Elongation F... 34 0.053
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved... 33 0.12
pdb|1QU1|F Chain F, Crystal Structure Of Eha2 (23-185) >gi|... 29 1.7
pdb|1PKY|A Chain A, Pyruvate Kinase From E. Coli In The T-S... 28 3.8
pdb|1HTM|D Chain D, Hemagglutinin Ectodomain (Soluble Fragm... 28 3.8
pdb|1E0T|A Chain A, R292d Mutant Of E. Coli Pyruvate Kinase... 28 3.8
pdb|1E0U|A Chain A, Structure R271l Mutant Of E. Coli Pyruv... 28 3.8
pdb|5HMG|B Chain B, Hemagglutinin (D112(B)G) (Bromelain Dig... 28 3.8
pdb|2VIU|B Chain B, Influenza Virus Hemagglutinin >gi|49411... 28 3.8
pdb|1HA0|A Chain A, Hemagglutinin Precursor Ha0 27 4.9
pdb|1A6D|A Chain A, Thermosome From T. Acidophilum >gi|4699... 27 6.5
pdb|1HDG|O Chain O, Holo-D-Glyceraldehyde-3-Phosphate Dehyd... 27 6.5
pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal ... 27 6.5
pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal ... 27 6.5
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex >... 27 8.4
pdb|1FI2|A Chain A, Crystal Structure Of Germin (Oxalate Ox... 27 8.4
>pdb|1ELO| Elongation Factor G Without Nucleotide
pdb|1DAR| Elongation Factor G In Complex With Gdp
Length = 691
Score = 114 bits (284), Expect = 4e-26
Identities = 58/137 (42%), Positives = 89/137 (64%), Gaps = 2/137 (1%)
Query: 1 MKNIRNIAVIAHVDHGKTTLVDGLLSQSGTFSEREKVDE--RVMDSNDLERERGITILSK 58
+K +RNI + AH+D GKTT + +L +G + +V E MD + ERERGITI +
Sbjct: 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA 68
Query: 59 NTAIYYKDTKINIIDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQTKFVVKKALSF 118
T ++KD +INIIDTPGH DF EVER ++++DG +++ D+ +GV PQ++ V ++A +
Sbjct: 69 VTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKY 128
Query: 119 GICPIVVVNKIDKPAAE 135
+ I NK+DK A+
Sbjct: 129 KVPRIAFANKMDKTGAD 145
Score = 68.9 bits (167), Expect = 1e-12
Identities = 67/264 (25%), Positives = 117/264 (43%), Gaps = 45/264 (17%)
Query: 178 EKKNLEPLFETILEHVPSP-----------SGSVDE-------PLQMQIFTLDYDNYVGK 219
+ K ++ L + +++++PSP G V E PL F + D YVG+
Sbjct: 265 KNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGR 324
Query: 220 IGIARVFNGSVKKNESVLLMKSDGSKENGRITKLIGFLGLARTEIENAYAGDIVAIAGFN 279
+ RV++G++ S + + G KE R+ +L+ R E+E AGD+ A+ G
Sbjct: 325 LTFIRVYSGTLTSG-SYVYNTTKGRKE--RVARLLRMHANHREEVEELKAGDLGAVVGLK 381
Query: 280 AMDVGDSVV-DPANPMPLDPMHLEEPTMSVYFAVNDSPLAGLEGKHVTANKLKDRLLKEM 338
GD++V + A + L+ + + EP + V A+ A E KL L +
Sbjct: 382 ETITGDTLVGEDAPRVILESIEVPEPVIDV--AIEPKTKADQE-------KLSQALARLA 432
Query: 339 QTNIAMKCEEMGE-GKFKVSGRGELQITILAENLRRE-GFEFSISRPEVIIKEENGVKCE 396
+ + + E G+ +SG GEL + I+ + L+RE + ++ +P+V +E
Sbjct: 433 EEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANVGKPQVAYRE------- 485
Query: 397 PFEHLVIDTPQDFSGAIIERLGKR 420
I P D G I + G R
Sbjct: 486 -----TITKPVDVEGKFIRQTGGR 504
Score = 38.1 bits (87), Expect = 0.003
Identities = 18/75 (24%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 387 IKEENGVKCEPFEHLVIDTPQDFSGAIIERLGKRKAEMKAMNPMSDGYTRLEFEIPARGL 446
+++ + V EP + + TP+++ G +I L R+ ++ M P + F +P +
Sbjct: 594 VQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAF-VPLAEM 652
Query: 447 IGYRSEFLTDTKGEG 461
GY ++ + T+G G
Sbjct: 653 FGYATDLRSKTQGRG 667
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
Length = 691
Score = 114 bits (284), Expect = 4e-26
Identities = 58/137 (42%), Positives = 89/137 (64%), Gaps = 2/137 (1%)
Query: 1 MKNIRNIAVIAHVDHGKTTLVDGLLSQSGTFSEREKVDE--RVMDSNDLERERGITILSK 58
+K +RNI + AH+D GKTT + +L +G + +V E MD + ERERGITI +
Sbjct: 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA 68
Query: 59 NTAIYYKDTKINIIDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQTKFVVKKALSF 118
T ++KD +INIIDTPGH DF EVER ++++DG +++ D+ +GV PQ++ V ++A +
Sbjct: 69 VTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKY 128
Query: 119 GICPIVVVNKIDKPAAE 135
+ I NK+DK A+
Sbjct: 129 KVPRIAFANKMDKTGAD 145
Score = 68.9 bits (167), Expect = 1e-12
Identities = 67/264 (25%), Positives = 117/264 (43%), Gaps = 45/264 (17%)
Query: 178 EKKNLEPLFETILEHVPSP-----------SGSVDE-------PLQMQIFTLDYDNYVGK 219
+ K ++ L + +++++PSP G V E PL F + D YVG+
Sbjct: 265 KNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGR 324
Query: 220 IGIARVFNGSVKKNESVLLMKSDGSKENGRITKLIGFLGLARTEIENAYAGDIVAIAGFN 279
+ RV++G++ S + + G KE R+ +L+ R E+E AGD+ A+ G
Sbjct: 325 LTFIRVYSGTLTSG-SYVYNTTKGRKE--RVARLLRMHANHREEVEELKAGDLGAVVGLK 381
Query: 280 AMDVGDSVV-DPANPMPLDPMHLEEPTMSVYFAVNDSPLAGLEGKHVTANKLKDRLLKEM 338
GD++V + A + L+ + + EP + V A+ A E KL L +
Sbjct: 382 ETITGDTLVGEDAPRVILESIEVPEPVIDV--AIEPKTKADQE-------KLSQALARLA 432
Query: 339 QTNIAMKCEEMGE-GKFKVSGRGELQITILAENLRRE-GFEFSISRPEVIIKEENGVKCE 396
+ + + E G+ +SG GEL + I+ + L+RE + ++ +P+V +E
Sbjct: 433 EEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANVGKPQVAYRE------- 485
Query: 397 PFEHLVIDTPQDFSGAIIERLGKR 420
I P D G I + G R
Sbjct: 486 -----TITKPVDVEGKFIRQTGGR 504
Score = 38.1 bits (87), Expect = 0.003
Identities = 18/75 (24%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 387 IKEENGVKCEPFEHLVIDTPQDFSGAIIERLGKRKAEMKAMNPMSDGYTRLEFEIPARGL 446
+++ + V EP + + TP+++ G +I L R+ ++ M P + F +P +
Sbjct: 594 VQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAF-VPLAEM 652
Query: 447 IGYRSEFLTDTKGEG 461
GY ++ + T+G G
Sbjct: 653 FGYATDLRSKTQGRG 667
>pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1EFG|A Chain A, Elongation Factor G Complexed With Guanosine
5'-Diphosphate
Length = 691
Score = 114 bits (284), Expect = 4e-26
Identities = 58/137 (42%), Positives = 89/137 (64%), Gaps = 2/137 (1%)
Query: 1 MKNIRNIAVIAHVDHGKTTLVDGLLSQSGTFSEREKVDE--RVMDSNDLERERGITILSK 58
+K +RNI + AH+D GKTT + +L +G + +V E MD + ERERGITI +
Sbjct: 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA 68
Query: 59 NTAIYYKDTKINIIDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQTKFVVKKALSF 118
T ++KD +INIIDTPGH DF EVER ++++DG +++ D+ +GV PQ++ V ++A +
Sbjct: 69 VTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKY 128
Query: 119 GICPIVVVNKIDKPAAE 135
+ I NK+DK A+
Sbjct: 129 KVPRIAFANKMDKTGAD 145
Score = 68.9 bits (167), Expect = 1e-12
Identities = 67/264 (25%), Positives = 117/264 (43%), Gaps = 45/264 (17%)
Query: 178 EKKNLEPLFETILEHVPSP-----------SGSVDE-------PLQMQIFTLDYDNYVGK 219
+ K ++ L + +++++PSP G V E PL F + D YVG+
Sbjct: 265 KNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGR 324
Query: 220 IGIARVFNGSVKKNESVLLMKSDGSKENGRITKLIGFLGLARTEIENAYAGDIVAIAGFN 279
+ RV++G++ S + + G KE R+ +L+ R E+E AGD+ A+ G
Sbjct: 325 LTFIRVYSGTLTSG-SYVYNTTKGRKE--RVARLLRMHANHREEVEELKAGDLGAVVGLK 381
Query: 280 AMDVGDSVV-DPANPMPLDPMHLEEPTMSVYFAVNDSPLAGLEGKHVTANKLKDRLLKEM 338
GD++V + A + L+ + + EP + V A+ A E KL L +
Sbjct: 382 ETITGDTLVGEDAPRVILESIEVPEPVIDV--AIEPKTKADQE-------KLSQALARLA 432
Query: 339 QTNIAMKCEEMGE-GKFKVSGRGELQITILAENLRRE-GFEFSISRPEVIIKEENGVKCE 396
+ + + E G+ +SG GEL + I+ + L+RE + ++ +P+V +E
Sbjct: 433 EEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANVGKPQVAYRE------- 485
Query: 397 PFEHLVIDTPQDFSGAIIERLGKR 420
I P D G I + G R
Sbjct: 486 -----TITKPVDVEGKFIRQTGGR 504
Score = 38.1 bits (87), Expect = 0.003
Identities = 18/75 (24%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 387 IKEENGVKCEPFEHLVIDTPQDFSGAIIERLGKRKAEMKAMNPMSDGYTRLEFEIPARGL 446
+++ + V EP + + TP+++ G +I L R+ ++ M P + F +P +
Sbjct: 594 VQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAF-VPLAEM 652
Query: 447 IGYRSEFLTDTKGEG 461
GY ++ + T+G G
Sbjct: 653 FGYATDLRSKTQGRG 667
>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1JNY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
Length = 435
Score = 96.3 bits (238), Expect = 9e-21
Identities = 94/323 (29%), Positives = 149/323 (46%), Gaps = 46/323 (14%)
Query: 6 NIAVIAHVDHGKTTLVDGLLSQSG-----TFSEREKVDER----------VMDSNDLERE 50
N+ VI HVDHGK+TLV LL G T E E+ ++ ++D ERE
Sbjct: 8 NLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERE 67
Query: 51 RGITILSKNTAIYYKDTKINIIDTPGHADFGGEVERVLKMVDGVLLLVDAQEG------- 103
RG+TI K IID PGH DF + D +L+V A++G
Sbjct: 68 RGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMS 127
Query: 104 VMPQTKFVVKKALSFGICPIVV-VNKID--KPAAEPDR---VVDEVFDLFVAMGASDKQL 157
V QT+ + A + G+ ++V VNK+D +P + R +VD+V + G + ++
Sbjct: 128 VEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKV 187
Query: 158 DFPVVYAAARDGYAMKSLDDEKKNLEPLFETILEHVPSPSGSVDEPLQMQIFTLDYDNYV 217
F V A + D KS ++ K P E L+ + P VD+PL++ I + + V
Sbjct: 188 RFVPVVAPSGDNITHKS-ENMKWYNGPTLEEYLDQLELPPKPVDKPLRIPIQDVYSISGV 246
Query: 218 GKIGIARVFNGSVKKNESVLLMKSDGSKENGRITKLIGFLGLARTEIENAYAGDIVAIAG 277
G + + RV +G +K + ++ M + G++ + + + T+++ A GD + G
Sbjct: 247 GTVPVGRVESGVLKVGDKIVFMPA------GKVGE-VRSIETHHTKMDKAEPGDNI---G 296
Query: 278 FNAMDV-------GDSVVDPANP 293
FN V GD V P NP
Sbjct: 297 FNVRGVEKKDIKRGDVVGHPNNP 319
>pdb|1EFT| Elongation Factor Tu (Ef-Tu) Complexed With
Guanosine-5'-(Beta,Gamma-Imido) Triphosphate (Gdpnp)
Length = 405
Score = 93.2 bits (230), Expect = 7e-20
Identities = 90/291 (30%), Positives = 135/291 (45%), Gaps = 36/291 (12%)
Query: 6 NIAVIAHVDHGKTTLVDGLLSQSGTFSEREKV-DERVMDSNDLERERGITILSKNTA-IY 63
N+ I HVDHGKTTL L + + +V D +D ER RGITI NTA +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTFVTAAENPNVEVKDYGDIDKAPEERARGITI---NTAHVE 69
Query: 64 YKDTKINI--IDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQTKFVVKKALSFGIC 121
Y+ K + +D PGHAD+ + +DG +L+V A +G MPQT+ + A G+
Sbjct: 70 YETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVP 129
Query: 122 PIVV-VNKIDKPAAEP---DRVVDEVFDLFVAMGASDKQLDFPVVYAAARDGYAMKSLDD 177
IVV +NK+D +P D V EV DL Q +FP G A+ +L++
Sbjct: 130 YIVVFMNKVDM-VDDPELLDLVEMEVRDLL-------NQYEFPGDEVPVIRGSALLALEE 181
Query: 178 EKKN-------------LEPLFETILEHVPSPSGSVDEPLQMQIFTLDYDNYVGKIGIAR 224
KN + L + I E++P+P VD+P M + + G + R
Sbjct: 182 MHKNPKTKRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGR 241
Query: 225 VFNGSVKKNESVLLMKSDGSKENGRITKLIGFLGLARTEIENAYAGDIVAI 275
+ G VK + V ++ G R T + G + + R ++ AGD V +
Sbjct: 242 IERGKVKVGDEVEIV---GLAPETRKTVVTG-VEMHRKTLQEGIAGDNVGL 288
>pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus Elongation Factor
Ef-Tu:gtp Ternary Complex
pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|B Chain B, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|C Chain C, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TUI|A Chain A, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|B Chain B, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|C Chain C, Intact Elongation Factor Tu In Complex With Gdp
Length = 405
Score = 93.2 bits (230), Expect = 7e-20
Identities = 90/291 (30%), Positives = 135/291 (45%), Gaps = 36/291 (12%)
Query: 6 NIAVIAHVDHGKTTLVDGLLSQSGTFSEREKV-DERVMDSNDLERERGITILSKNTA-IY 63
N+ I HVDHGKTTL L + + +V D +D ER RGITI NTA +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITI---NTAHVE 69
Query: 64 YKDTKINI--IDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQTKFVVKKALSFGIC 121
Y+ K + +D PGHAD+ + +DG +L+V A +G MPQT+ + A G+
Sbjct: 70 YETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVP 129
Query: 122 PIVV-VNKIDKPAAEP---DRVVDEVFDLFVAMGASDKQLDFPVVYAAARDGYAMKSLDD 177
IVV +NK+D +P D V EV DL Q +FP G A+ +L++
Sbjct: 130 YIVVFMNKVDM-VDDPELLDLVEMEVRDLL-------NQYEFPGDEVPVIRGSALLALEE 181
Query: 178 EKKN-------------LEPLFETILEHVPSPSGSVDEPLQMQIFTLDYDNYVGKIGIAR 224
KN + L + I E++P+P VD+P M + + G + R
Sbjct: 182 MHKNPKTKRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGR 241
Query: 225 VFNGSVKKNESVLLMKSDGSKENGRITKLIGFLGLARTEIENAYAGDIVAI 275
+ G VK + V ++ G R T + G + + R ++ AGD V +
Sbjct: 242 IERGKVKVGDEVEIV---GLAPETRKTVVTG-VEMHRKTLQEGIAGDNVGL 288
>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation
Factor Tu (Ef-Tu) In Complex With The Gtp Analogue
Gppnhp.
pdb|1HA3|A Chain A, Elongation Factor Tu In Complex With Aurodox
pdb|1HA3|B Chain B, Elongation Factor Tu In Complex With Aurodox
Length = 405
Score = 91.7 bits (226), Expect = 2e-19
Identities = 89/291 (30%), Positives = 134/291 (45%), Gaps = 36/291 (12%)
Query: 6 NIAVIAHVDHGKTTLVDGLLSQSGTFSEREKV-DERVMDSNDLERERGITILSKNTA-IY 63
N+ I HVDHGKTTL L + + +V D +D ER RGITI NTA +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTFVTAAENPNVEVKDYGDIDKAPEERARGITI---NTAHVE 69
Query: 64 YKDTKINI--IDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQTKFVVKKALSFGIC 121
Y+ K + +D PGHAD+ + +DG +L+V A +G MPQT+ + A G+
Sbjct: 70 YETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVP 129
Query: 122 PIVV-VNKIDKPAAEP---DRVVDEVFDLFVAMGASDKQLDFPVVYAAARDGYAMKSLDD 177
IVV +NK+D +P D V EV DL Q +FP G A+ +L+
Sbjct: 130 YIVVFMNKVDM-VDDPELLDLVEMEVRDLL-------NQYEFPGDEVPVIRGSALLALEQ 181
Query: 178 EKKN-------------LEPLFETILEHVPSPSGSVDEPLQMQIFTLDYDNYVGKIGIAR 224
+N + L + I E++P+P VD+P M + + G + R
Sbjct: 182 MHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGR 241
Query: 225 VFNGSVKKNESVLLMKSDGSKENGRITKLIGFLGLARTEIENAYAGDIVAI 275
+ G VK + V ++ G R T + G + + R ++ AGD V +
Sbjct: 242 IERGKVKVGDEVEIV---GLAPETRKTVVTG-VEMHRKTLQEGIAGDNVGV 288
>pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|B Chain B, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|F Chain F, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 405
Score = 91.7 bits (226), Expect = 2e-19
Identities = 89/291 (30%), Positives = 134/291 (45%), Gaps = 36/291 (12%)
Query: 6 NIAVIAHVDHGKTTLVDGLLSQSGTFSEREKV-DERVMDSNDLERERGITILSKNTA-IY 63
N+ I HVDHGKTTL L + + +V D +D ER RGITI NTA +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVTAAENPNVEVKDYGDIDKAPEERARGITI---NTAHVE 69
Query: 64 YKDTKINI--IDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQTKFVVKKALSFGIC 121
Y+ K + +D PGHAD+ + +DG +L+V A +G MPQT+ + A G+
Sbjct: 70 YETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVP 129
Query: 122 PIVV-VNKIDKPAAEP---DRVVDEVFDLFVAMGASDKQLDFPVVYAAARDGYAMKSLDD 177
IVV +NK+D +P D V EV DL Q +FP G A+ +L+
Sbjct: 130 YIVVFMNKVDM-VDDPELLDLVEMEVRDLL-------NQYEFPGDEVPVIRGSALLALEQ 181
Query: 178 EKKN-------------LEPLFETILEHVPSPSGSVDEPLQMQIFTLDYDNYVGKIGIAR 224
+N + L + I E++P+P VD+P M + + G + R
Sbjct: 182 MHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGR 241
Query: 225 VFNGSVKKNESVLLMKSDGSKENGRITKLIGFLGLARTEIENAYAGDIVAI 275
+ G VK + V ++ G R T + G + + R ++ AGD V +
Sbjct: 242 IERGKVKVGDEVEIV---GLAPETRRTVVTG-VEMHRKTLQEGIAGDNVGV 288
>pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Resolution Cryo-Em
Map Of An Ef-Tu Ternary Complex (Gdp And Kirromycin)
Bound To E. Coli 70s Ribosome
pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli
pdb|1EFC|B Chain B, Intact Elongation Factor From E.Coli
Length = 393
Score = 80.5 bits (197), Expect = 5e-16
Identities = 83/296 (28%), Positives = 133/296 (44%), Gaps = 36/296 (12%)
Query: 6 NIAVIAHVDHGKTTLVDGLLSQ-SGTFSEREKVDERVMDSNDLERERGITILSKNTAIYY 64
N+ I HVDHGKTTL + + + T+ + +++ D+ E+ RGITI + +
Sbjct: 13 NVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQI-DNAPEEKARGITINTSHVEYDT 71
Query: 65 KDTKINIIDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQTKFVVKKALSFGICPIV 124
+D PGHAD+ + +DG +L+V A +G MPQT+ + G+ I+
Sbjct: 72 PTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYII 131
Query: 125 V-VNKIDKPAAEPDRVVDEVFDLFVAMGASD--KQLDFPVVYAAARDGYAMKSLDD---- 177
V +NK D V DE V M + Q DFP G A+K+L+
Sbjct: 132 VFLNKC-------DMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEW 184
Query: 178 EKKNLEPLFETILEHVPSPSGSVDEPLQMQIFTLDYDNYVGKIGIARVFNGSVKKNESVL 237
E K LE L + ++P P ++D+P + I + + G + RV G +K E V
Sbjct: 185 EAKILE-LAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVE 243
Query: 238 LMKSDGSK--------------ENGRITKLIGFL--GLARTEIENAYAGDIVAIAG 277
++ ++ + GR + +G L G+ R EIE G ++A G
Sbjct: 244 IVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIER---GQVLAKPG 296
>pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|1D8T|B Chain B, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
Length = 393
Score = 80.5 bits (197), Expect = 5e-16
Identities = 83/296 (28%), Positives = 133/296 (44%), Gaps = 36/296 (12%)
Query: 6 NIAVIAHVDHGKTTLVDGLLSQ-SGTFSEREKVDERVMDSNDLERERGITILSKNTAIYY 64
N+ I HVDHGKTTL + + + T+ + +++ D+ E+ RGITI + +
Sbjct: 13 NVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQI-DNAPEEKARGITINTSHVEYDT 71
Query: 65 KDTKINIIDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQTKFVVKKALSFGICPIV 124
+D PGHAD+ + +DG +L+V A +G MPQT+ + G+ I+
Sbjct: 72 PTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYII 131
Query: 125 V-VNKIDKPAAEPDRVVDEVFDLFVAMGASD--KQLDFPVVYAAARDGYAMKSLDD---- 177
V +NK D V DE V M + Q DFP G A+K+L+
Sbjct: 132 VFLNKC-------DMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEW 184
Query: 178 EKKNLEPLFETILEHVPSPSGSVDEPLQMQIFTLDYDNYVGKIGIARVFNGSVKKNESVL 237
E K LE L + ++P P ++D+P + I + + G + RV G +K E V
Sbjct: 185 EAKILE-LAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVE 243
Query: 238 LMKSDGSK--------------ENGRITKLIGFL--GLARTEIENAYAGDIVAIAG 277
++ ++ + GR + +G L G+ R EIE G ++A G
Sbjct: 244 IVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIER---GQVLAKPG 296
>pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
pdb|1EFU|C Chain C, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
Length = 385
Score = 80.5 bits (197), Expect = 5e-16
Identities = 83/296 (28%), Positives = 133/296 (44%), Gaps = 36/296 (12%)
Query: 6 NIAVIAHVDHGKTTLVDGLLSQ-SGTFSEREKVDERVMDSNDLERERGITILSKNTAIYY 64
N+ I HVDHGKTTL + + + T+ + +++ D+ E+ RGITI + +
Sbjct: 5 NVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQI-DNAPEEKARGITINTSHVEYDT 63
Query: 65 KDTKINIIDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQTKFVVKKALSFGICPIV 124
+D PGHAD+ + +DG +L+V A +G MPQT+ + G+ I+
Sbjct: 64 PTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYII 123
Query: 125 V-VNKIDKPAAEPDRVVDEVFDLFVAMGASD--KQLDFPVVYAAARDGYAMKSLDD---- 177
V +NK D V DE V M + Q DFP G A+K+L+
Sbjct: 124 VFLNKC-------DMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEW 176
Query: 178 EKKNLEPLFETILEHVPSPSGSVDEPLQMQIFTLDYDNYVGKIGIARVFNGSVKKNESVL 237
E K LE L + ++P P ++D+P + I + + G + RV G +K E V
Sbjct: 177 EAKILE-LAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVE 235
Query: 238 LMKSDGSK--------------ENGRITKLIGFL--GLARTEIENAYAGDIVAIAG 277
++ ++ + GR + +G L G+ R EIE G ++A G
Sbjct: 236 IVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIER---GQVLAKPG 288
>pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu).
pdb|1DG1|H Chain H, Whole, Unmodified, Ef-Tu(Elongation Factor Tu)
Length = 394
Score = 80.5 bits (197), Expect = 5e-16
Identities = 83/296 (28%), Positives = 133/296 (44%), Gaps = 36/296 (12%)
Query: 6 NIAVIAHVDHGKTTLVDGLLSQ-SGTFSEREKVDERVMDSNDLERERGITILSKNTAIYY 64
N+ I HVDHGKTTL + + + T+ + +++ D+ E+ RGITI + +
Sbjct: 14 NVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQI-DNAPEEKARGITINTSHVEYDT 72
Query: 65 KDTKINIIDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQTKFVVKKALSFGICPIV 124
+D PGHAD+ + +DG +L+V A +G MPQT+ + G+ I+
Sbjct: 73 PTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYII 132
Query: 125 V-VNKIDKPAAEPDRVVDEVFDLFVAMGASD--KQLDFPVVYAAARDGYAMKSLDD---- 177
V +NK D V DE V M + Q DFP G A+K+L+
Sbjct: 133 VFLNKC-------DMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEW 185
Query: 178 EKKNLEPLFETILEHVPSPSGSVDEPLQMQIFTLDYDNYVGKIGIARVFNGSVKKNESVL 237
E K LE L + ++P P ++D+P + I + + G + RV G +K E V
Sbjct: 186 EAKILE-LAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVE 244
Query: 238 LMKSDGSK--------------ENGRITKLIGFL--GLARTEIENAYAGDIVAIAG 277
++ ++ + GR + +G L G+ R EIE G ++A G
Sbjct: 245 IVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIER---GQVLAKPG 297
>pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|B Chain B, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|C Chain C, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|D Chain D, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
Length = 397
Score = 80.1 bits (196), Expect = 6e-16
Identities = 72/276 (26%), Positives = 130/276 (47%), Gaps = 24/276 (8%)
Query: 6 NIAVIAHVDHGKTTLVDGL--LSQSGTFSEREKVDERVMDSNDLERERGITILSKNTAIY 63
N+ I HVDHGKTTL + + G ++ +K +E +D+ ER RGITI + +
Sbjct: 5 NVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEE--IDNAPEERARGITINAAHVEYS 62
Query: 64 YKDTKINIIDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQTKFVVKKALSFGICPI 123
D PGHAD+ + +DG +L+V A +G MPQT+ + A G+ +
Sbjct: 63 TAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHV 122
Query: 124 VV-VNKIDKPAAEPDRVVD----EVFDLFVAMGASDKQLDFPVVYAAARDGYAMKSLDDE 178
VV VNK D A + +V+ E+ +L G ++ P++ +A + +
Sbjct: 123 VVYVNKAD--AVQDSEMVELVELEIRELLTEFGYKGEET--PIIVGSALCALEQRDPELG 178
Query: 179 KKNLEPLFETILEHVPSPSGSVDEPLQMQIFTLDYDNYVGKIGIARVFNGSVKKNESVLL 238
K+++ L + + ++P P+ +++P F L ++ G V G++++ +L
Sbjct: 179 LKSVQKLLDAVDTYIPVPTRDLEKP-----FLLPVESVYSIPGRGTVVTGTLERG---IL 230
Query: 239 MKSDGSKENG---RITKLIGFLGLARTEIENAYAGD 271
K D + G I ++ + + ++ A AGD
Sbjct: 231 KKGDECEFLGHSKNIRTVVTGIEMFHKSLDRAEAGD 266
>pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND BOSOMAL
Proteins Into A 13 A Cryo-Em Map Of The Coli 70s
Ribosome
Length = 405
Score = 73.2 bits (178), Expect = 8e-14
Identities = 85/290 (29%), Positives = 131/290 (44%), Gaps = 34/290 (11%)
Query: 6 NIAVIAHVDHGKTTLVDGLLSQSGTFSEREKV-DERVMDSNDLERERGITILSKNTA-IY 63
N+ I HVDHGKTTL L + + +V D +D ER RGITI NTA +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENRNVEVKDYGDIDKAREERARGITI---NTAHVE 69
Query: 64 YKDTKINI--IDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQTKFVVKKALSFGIC 121
Y+ K + +D GHAD+ + +DG +L+V A +G M QT+ + A G+
Sbjct: 70 YETAKRHYSHVDCRGHADYIKNMITGAAQMDGAILVVSAADGRMRQTREHILLARQVGVR 129
Query: 122 PIVV-VNKIDKPAAEPDRVVDEVFDLFVAMGASD--KQLDFPVVYAAARDGYAMKSLDDE 178
IVV +NK+D DR E+ DL V M D Q +F G A+ +L++
Sbjct: 130 YIVVFMNKVD---MVDDR---ELLDL-VEMEVRDLLNQYEFRGDEVRVIRGSALLALEEM 182
Query: 179 KKN-------------LEPLFETILEHVPSPSGSVDEPLQMQIFTLDYDNYVGKIGIARV 225
KN + L + I E++ + VD+ M++ + G + R+
Sbjct: 183 HKNRKTKRGENEWVDKIWELLDAIDEYIRTRVRDVDKRFLMRVEDVFTITGRGTVATGRI 242
Query: 226 FNGSVKKNESVLLMKSDGSKENGRITKLIGFLGLARTEIENAYAGDIVAI 275
G VK + V ++ G R T + G + + R ++ AGD V +
Sbjct: 243 ERGKVKVGDEVEIV---GLARETRKTVVTG-VEMHRKTLQEGIAGDNVGL 288
>pdb|1ETU| Elongation Factor Tu (Domain I) - Guanosine Diphosphate Complex
Length = 394
Score = 71.6 bits (174), Expect = 2e-13
Identities = 79/295 (26%), Positives = 121/295 (40%), Gaps = 34/295 (11%)
Query: 6 NIAVIAHVDHGKTTLVDGLLSQSGTFSEREKVDERVMDSNDLERERGITILSKNTAIYYK 65
N+ I HVDHGKTTL + + GITI + +
Sbjct: 14 NVGTIGHVDHGKTTLTAAITTVLAKTYGGAAXXXXXXXXXXXXXXXGITINTSHVEYDTP 73
Query: 66 DTKINIIDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQTKFVVKKALSFGICPIVV 125
+D PGHAD+ + +DG +L+V A +G MPQT+ + G+ I+V
Sbjct: 74 TRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIV 133
Query: 126 -VNKIDKPAAEPDRVVDEVFDLFVAMGASD--KQLDFPVVYAAARDGYAMKSLDD----E 178
+NK D V DE V M + Q DFP G A+K+L+ E
Sbjct: 134 FLNKC-------DMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWE 186
Query: 179 KKNLEPLFETILEHVPSPSGSVDEPLQMQIFTLDYDNYVGKIGIARVFNGSVKKNESVLL 238
K LE L + ++P P ++D+P + I + + G + RV G +K E V +
Sbjct: 187 AKILE-LAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEI 245
Query: 239 MKSDGSK--------------ENGRITKLIGFL--GLARTEIENAYAGDIVAIAG 277
+ ++ + GR + +G L G+ R EIE G ++A G
Sbjct: 246 VGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIER---GQVLAKPG 297
>pdb|1EFM| Trypsin-Modified Elongation Factor Tu (EF-Tu-GDP)
Length = 393
Score = 70.9 bits (172), Expect = 4e-13
Identities = 79/295 (26%), Positives = 121/295 (40%), Gaps = 34/295 (11%)
Query: 6 NIAVIAHVDHGKTTLVDGLLSQSGTFSEREKVDERVMDSNDLERERGITILSKNTAIYYK 65
N+ I HVDHGKTTL + + GITI + +
Sbjct: 13 NVGTIGHVDHGKTTLTAAITTVLAKTYGGAARXXXXXXXXXXXXXXGITINTSHVEYDTP 72
Query: 66 DTKINIIDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQTKFVVKKALSFGICPIVV 125
+D PGHAD+ + +DG +L+V A +G MPQT+ + G+ I+V
Sbjct: 73 TRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIV 132
Query: 126 -VNKIDKPAAEPDRVVDEVFDLFVAMGASD--KQLDFPVVYAAARDGYAMKSLDD----E 178
+NK D V DE V M + Q DFP G A+K+L+ E
Sbjct: 133 FLNKC-------DMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWE 185
Query: 179 KKNLEPLFETILEHVPSPSGSVDEPLQMQIFTLDYDNYVGKIGIARVFNGSVKKNESVLL 238
K LE L + ++P P ++D+P + I + + G + RV G +K E V +
Sbjct: 186 AKILE-LAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEI 244
Query: 239 MKSDGSK--------------ENGRITKLIGFL--GLARTEIENAYAGDIVAIAG 277
+ ++ + GR + +G L G+ R EIE G ++A G
Sbjct: 245 VGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIER---GQVLAKPG 296
>pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex
Eef1a:eef1ba
pdb|1G7C|A Chain A, Yeast Eef1a:eef1ba In Complex With Gdpnp
pdb|1IJF|A Chain A, Nucleotide Exchange Mechanisms In The Eef1a-Eef1ba Complex
pdb|1IJE|A Chain A, Nucleotide Exchange Intermediates In The Eef1a-Eef1ba
Complex
Length = 458
Score = 67.4 bits (163), Expect = 4e-12
Identities = 79/318 (24%), Positives = 135/318 (41%), Gaps = 53/318 (16%)
Query: 6 NIAVIAHVDHGKTTLVDGLLSQSGTFSER--EKVDER-------------VMDSNDLERE 50
N+ VI HVD GK+T L+ + G +R EK ++ V+D ERE
Sbjct: 9 NVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERE 68
Query: 51 RGITILSKNTAIYYKDT---KINIIDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMP- 106
RGITI + A++ +T ++ +ID PGH DF + D +L++ G
Sbjct: 69 RGITI---DIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEA 125
Query: 107 ------QTKFVVKKALSFGICPIVV-VNKIDKPAAEPDR---VVDEVFDLFVAMGASDKQ 156
QT+ A + G+ ++V VNK+D + R +V E + +G + K
Sbjct: 126 GISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKT 185
Query: 157 LDF-PV-------VYAAARDGYAMKSLDDEKKNLEPLFETILEHVPS---PSGSVDEPLQ 205
+ F P+ + A + K + E K +T+LE + + PS D+PL+
Sbjct: 186 VPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAIDAIEQPSRPTDKPLR 245
Query: 206 MQIFTLDYDNYVGKIGIARVFNGSVKKNESVLLMKSDGSKENGRITKLIGFLGLARTEIE 265
+ + + +G + + RV G +K V + +T + + + ++E
Sbjct: 246 LPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAG-------VTTEVKSVEMHHEQLE 298
Query: 266 NAYAGDIVAIAGFNAMDV 283
GD V GFN +V
Sbjct: 299 QGVPGDNV---GFNVKNV 313
>pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant
pdb|1KK2|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdp-Mg2+
pdb|1KK1|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdpnp-Mg2+
Length = 410
Score = 53.9 bits (128), Expect = 5e-08
Identities = 74/312 (23%), Positives = 124/312 (39%), Gaps = 72/312 (23%)
Query: 6 NIAVIAHVDHGKTTLVDGLLSQSGTFSEREKVDERVMDSNDLERERGITI---------- 55
NI ++ HVDHGKTTL L +G ++ D++ E RGITI
Sbjct: 12 NIGMVGHVDHGKTTLTKAL---TGVWT----------DTHSEELRRGITIKIGFADAEIR 58
Query: 56 LSKNTAIYYKD-------------TKINIIDTPGHADFGGEVERVLKMVDGVLLLVDAQE 102
N Y +++ ID PGH + ++DG +L++ A E
Sbjct: 59 RCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANE 118
Query: 103 GV-MPQTKFVVKKALSFGICPIVVV-NKID----KPAAEPDRVVDEVFDLFVAMGASDKQ 156
PQT+ + G I++ NKI+ + A E R + E + VA A
Sbjct: 119 PCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENA---- 174
Query: 157 LDFPVVYAAARDGYAMKSLDDEKKNLEPLFETILEHVPSPSGSVDEPLQMQIF-TLDY-- 213
P++ +A G N++ L + I + +P+P ++P +M + + D
Sbjct: 175 ---PIIPISALHG----------ANIDVLVKAIEDFIPTPKRDPNKPPKMLVLRSFDVNK 221
Query: 214 -----DNYVGKIGIARVFNGSVKKNESVLLMKSDGSKENGR-----ITKLIGFLGLARTE 263
+ VG + + G +K + + + +E+GR IT I L
Sbjct: 222 PGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQAGGQF 281
Query: 264 IENAYAGDIVAI 275
+E AY G +V +
Sbjct: 282 VEEAYPGGLVGV 293
>pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of
Initiation Factor Eif2 From Pyrococcus Abyssi Complexed
With Gdp-Mg2+
Length = 410
Score = 53.5 bits (127), Expect = 6e-08
Identities = 74/312 (23%), Positives = 124/312 (39%), Gaps = 72/312 (23%)
Query: 6 NIAVIAHVDHGKTTLVDGLLSQSGTFSEREKVDERVMDSNDLERERGITI---------- 55
NI ++ HVDHGKTTL L +G ++ D++ E RGITI
Sbjct: 12 NIGMVGHVDHGKTTLTKAL---TGVWT----------DTHSEELRRGITIKIGFADAEIR 58
Query: 56 LSKNTAIYYKD-------------TKINIIDTPGHADFGGEVERVLKMVDGVLLLVDAQE 102
N Y +++ ID PGH + ++DG +L++ A E
Sbjct: 59 RCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANE 118
Query: 103 GV-MPQTKFVVKKALSFGICPIVVV-NKID----KPAAEPDRVVDEVFDLFVAMGASDKQ 156
PQT+ + G I++ NKI+ + A E R + E + VA A
Sbjct: 119 PCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENA---- 174
Query: 157 LDFPVVYAAARDGYAMKSLDDEKKNLEPLFETILEHVPSPSGSVDEPLQMQIF-TLDY-- 213
P++ +A G N++ L + I + +P+P ++P +M + + D
Sbjct: 175 ---PIIPISALHG----------ANIDVLVKAIEDFIPTPKRDPNKPPKMLVLRSFDVNK 221
Query: 214 -----DNYVGKIGIARVFNGSVKKNESVLLMKSDGSKENGR-----ITKLIGFLGLARTE 263
+ VG + + G +K + + + +E+GR IT I L
Sbjct: 222 PGTPPEKLVGGVLGGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQAGGQF 281
Query: 264 IENAYAGDIVAI 275
+E AY G +V +
Sbjct: 282 VEEAYPGGLVGV 293
>pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdpnp
pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdp
Length = 594
Score = 52.8 bits (125), Expect = 1e-07
Identities = 38/127 (29%), Positives = 61/127 (47%), Gaps = 2/127 (1%)
Query: 7 IAVIAHVDHGKTTLVDGLLSQSGTFSEREKVDERVMDSN-DLERERGIT-ILSKNTAIYY 64
++V+ HVDHGKTTL+D + + E + + + + ++ GI K +I
Sbjct: 8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRE 67
Query: 65 KDTKINIIDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQTKFVVKKALSFGICPIV 124
+ IDTPGH F +R + D +L+VD EG PQT+ + + +V
Sbjct: 68 TLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVV 127
Query: 125 VVNKIDK 131
NKID+
Sbjct: 128 AANKIDR 134
>pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Length = 594
Score = 52.8 bits (125), Expect = 1e-07
Identities = 38/129 (29%), Positives = 62/129 (47%), Gaps = 6/129 (4%)
Query: 7 IAVIAHVDHGKTTLVDGLLSQSGTFSEREKVDERV----MDSNDLERERGITILSKNTAI 62
++V+ HVDHGKTTL+D + + E + + + + + +E G + K +I
Sbjct: 8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPXDVIEGICGDFL--KKFSI 65
Query: 63 YYKDTKINIIDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQTKFVVKKALSFGICP 122
+ IDTPGH F +R + D +L+VD EG PQT+ + +
Sbjct: 66 RETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRXYRTPF 125
Query: 123 IVVVNKIDK 131
+V NKID+
Sbjct: 126 VVAANKIDR 134
>pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi
Length = 410
Score = 51.2 bits (121), Expect = 3e-07
Identities = 74/312 (23%), Positives = 122/312 (38%), Gaps = 72/312 (23%)
Query: 6 NIAVIAHVDHGKTTLVDGLLSQSGTFSEREKVDERVMDSNDLERERGITIL--------- 56
NI + HVDHGKTTL L +G ++ D++ E RGITI
Sbjct: 12 NIGXVGHVDHGKTTLTKAL---TGVWT----------DTHSEELRRGITIKIGFADAEIR 58
Query: 57 -SKNTAIYYKDT-------------KINIIDTPGHADFGGEVERVLKMVDGVLLLVDAQE 102
N Y +++ ID PGH + DG +L++ A E
Sbjct: 59 RCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALXTTXLAGASLXDGAILVIAANE 118
Query: 103 GV-MPQTKFVVKKALSFGICPIVVV-NKID----KPAAEPDRVVDEVFDLFVAMGASDKQ 156
PQT+ + G I++ NKI+ + A E R + E + VA A
Sbjct: 119 PCPRPQTREHLXALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENA---- 174
Query: 157 LDFPVVYAAARDGYAMKSLDDEKKNLEPLFETILEHVPSPSGSVDEP---LQMQIFTLDY 213
P++ +A G N++ L + I + +P+P ++P L ++ F ++
Sbjct: 175 ---PIIPISALHG----------ANIDVLVKAIEDFIPTPKRDPNKPPKXLVLRSFDVNK 221
Query: 214 -----DNYVGKIGIARVFNGSVKKNESVLLMKSDGSKENGR-----ITKLIGFLGLARTE 263
+ VG + + G +K + + + +E+GR IT I L
Sbjct: 222 PGTPPEKLVGGVLGGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQAGGQF 281
Query: 264 IENAYAGDIVAI 275
+E AY G +V +
Sbjct: 282 VEEAYPGGLVGV 293
>pdb|1JQS|C Chain C, Fitting Of L11 Protein And Elongation Factor G (Domain G'
And V) In The Cryo-Em Map Of E. Coli 70s Ribosome Bound
With Ef-G And Gmppcp, A Nonhydrolysable Gtp Analog
Length = 68
Score = 33.9 bits (76), Expect = 0.053
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 403 IDTPQDFSGAIIERLGKRKAEMKAMNPMSDGYTRLEFEIPARGLIGYRSEFLTDTKGEG 461
+ TP+++ G +I L R+ ++ M P + F +P + GY ++ + T+G G
Sbjct: 5 VTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAF-VPLAEMFGYATDLRSKTQGRG 62
>pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
Length = 301
Score = 32.7 bits (73), Expect = 0.12
Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 25/140 (17%)
Query: 7 IAVIAHVDHGKTTLVDGLLSQSGTFSEREKVDERVMDSNDLERERGITILSKNTAIYYKD 66
IA++ + GK+TL++ LL Q + + R+ R R GI AIY
Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTR-------HRIVGIHTEGAYQAIY--- 60
Query: 67 TKINIIDTPG-HADFGGEVERVL-----KMVDGVLLLVDAQEGV--MPQTKFVVKKALSF 118
+DTPG H + + R++ + V L++ EG P + V+ K L
Sbjct: 61 -----VDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNK-LRE 114
Query: 119 GICPIVV-VNKIDKPAAEPD 137
G P+++ VNK+D + D
Sbjct: 115 GKAPVILAVNKVDNVQEKAD 134
>pdb|1QU1|F Chain F, Crystal Structure Of Eha2 (23-185)
pdb|1QU1|C Chain C, Crystal Structure Of Eha2 (23-185)
pdb|1QU1|D Chain D, Crystal Structure Of Eha2 (23-185)
pdb|1QU1|E Chain E, Crystal Structure Of Eha2 (23-185)
pdb|1QU1|B Chain B, Crystal Structure Of Eha2 (23-185)
pdb|1QU1|A Chain A, Crystal Structure Of Eha2 (23-185)
Length = 155
Score = 28.9 bits (63), Expect = 1.7
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 13/90 (14%)
Query: 303 EPTMSVYFAVNDSPLAGLEGKHVT------ANKLKDRLLKEMQTNIAMKCEEMGEGKFKV 356
E T ++ N L LE +H NKL ++ ++++ N EEMG G FK+
Sbjct: 55 EDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFEKTRRQLREN----AEEMGNGSFKI 110
Query: 357 SGRGELQITILAENLRREGFEFSISRPEVI 386
+ + E++R ++ + R E +
Sbjct: 111 YHKCD---NACIESIRNGTYDHDVYRDEAL 137
>pdb|1PKY|A Chain A, Pyruvate Kinase From E. Coli In The T-State
pdb|1PKY|B Chain B, Pyruvate Kinase From E. Coli In The T-State
pdb|1PKY|D Chain D, Pyruvate Kinase From E. Coli In The T-State
pdb|1PKY|C Chain C, Pyruvate Kinase From E. Coli In The T-State
Length = 470
Score = 27.7 bits (60), Expect = 3.8
Identities = 16/48 (33%), Positives = 26/48 (53%), Gaps = 1/48 (2%)
Query: 16 GKTTLVD-GLLSQSGTFSEREKVDERVMDSNDLERERGITILSKNTAI 62
G T LVD GL+ T E KV +V+++ DL +G+ + + A+
Sbjct: 120 GNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIAL 167
>pdb|1HTM|D Chain D, Hemagglutinin Ectodomain (Soluble Fragment, Tbha2)
pdb|1HTM|F Chain F, Hemagglutinin Ectodomain (Soluble Fragment, Tbha2)
pdb|1HTM|B Chain B, Hemagglutinin Ectodomain (Soluble Fragment, Tbha2)
Length = 138
Score = 27.7 bits (60), Expect = 3.8
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 13/90 (14%)
Query: 303 EPTMSVYFAVNDSPLAGLEGKHVT------ANKLKDRLLKEMQTNIAMKCEEMGEGKFKV 356
E T ++ N L LE +H NKL ++ ++++ N EEMG G FK+
Sbjct: 48 EDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFEKTRRQLREN----AEEMGNGCFKI 103
Query: 357 SGRGELQITILAENLRREGFEFSISRPEVI 386
+ + E++R ++ + R E +
Sbjct: 104 YHKCD---NACIESIRNGTYDHDVYRDEAL 130
>pdb|1E0T|A Chain A, R292d Mutant Of E. Coli Pyruvate Kinase
pdb|1E0T|B Chain B, R292d Mutant Of E. Coli Pyruvate Kinase
pdb|1E0T|C Chain C, R292d Mutant Of E. Coli Pyruvate Kinase
pdb|1E0T|D Chain D, R292d Mutant Of E. Coli Pyruvate Kinase
Length = 470
Score = 27.7 bits (60), Expect = 3.8
Identities = 16/48 (33%), Positives = 26/48 (53%), Gaps = 1/48 (2%)
Query: 16 GKTTLVD-GLLSQSGTFSEREKVDERVMDSNDLERERGITILSKNTAI 62
G T LVD GL+ T E KV +V+++ DL +G+ + + A+
Sbjct: 120 GNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIAL 167
>pdb|1E0U|A Chain A, Structure R271l Mutant Of E. Coli Pyruvate Kinase
pdb|1E0U|B Chain B, Structure R271l Mutant Of E. Coli Pyruvate Kinase
pdb|1E0U|C Chain C, Structure R271l Mutant Of E. Coli Pyruvate Kinase
pdb|1E0U|D Chain D, Structure R271l Mutant Of E. Coli Pyruvate Kinase
Length = 470
Score = 27.7 bits (60), Expect = 3.8
Identities = 16/48 (33%), Positives = 26/48 (53%), Gaps = 1/48 (2%)
Query: 16 GKTTLVD-GLLSQSGTFSEREKVDERVMDSNDLERERGITILSKNTAI 62
G T LVD GL+ T E KV +V+++ DL +G+ + + A+
Sbjct: 120 GNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIAL 167
>pdb|5HMG|B Chain B, Hemagglutinin (D112(B)G) (Bromelain Digested) (Mutant With
Asp 112 Replaced By Gly In Ha2 Chains) Complex With
Sialic Acid
pdb|5HMG|D Chain D, Hemagglutinin (D112(B)G) (Bromelain Digested) (Mutant With
Asp 112 Replaced By Gly In Ha2 Chains) Complex With
Sialic Acid
pdb|5HMG|F Chain F, Hemagglutinin (D112(B)G) (Bromelain Digested) (Mutant With
Asp 112 Replaced By Gly In Ha2 Chains) Complex With
Sialic Acid
Length = 175
Score = 27.7 bits (60), Expect = 3.8
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 13/90 (14%)
Query: 303 EPTMSVYFAVNDSPLAGLEGKHVT------ANKLKDRLLKEMQTNIAMKCEEMGEGKFKV 356
E T ++ N L LE +H NKL ++ ++++ N EEMG G FK+
Sbjct: 85 EDTKIDLWSYNAELLVALENQHTIDLTGSEMNKLFEKTRRQLREN----AEEMGNGCFKI 140
Query: 357 SGRGELQITILAENLRREGFEFSISRPEVI 386
+ + E++R ++ + R E +
Sbjct: 141 YHKCD---NACIESIRNGTYDHDVYRDEAL 167
>pdb|2VIU|B Chain B, Influenza Virus Hemagglutinin
pdb|1HGE|B Chain B, Hemagglutinin (Bromelain Digested) Mutant With Gly 135
Replaced By Arg (G135r) In Ha1 Chains Complex With
Alpha-2-O-Methyl-5-N-Acetyl-Alpha-D-Neuraminic Acid
pdb|1HGE|D Chain D, Hemagglutinin (Bromelain Digested) Mutant With Gly 135
Replaced By Arg (G135r) In Ha1 Chains Complex With
Alpha-2-O-Methyl-5-N-Acetyl-Alpha-D-Neuraminic Acid
pdb|1HGE|F Chain F, Hemagglutinin (Bromelain Digested) Mutant With Gly 135
Replaced By Arg (G135r) In Ha1 Chains Complex With
Alpha-2-O-Methyl-5-N-Acetyl-Alpha-D-Neuraminic Acid
pdb|1HGH|B Chain B, Hemagglutinin (Bromelain Digested) Complex With
Alpha-2-O-(4'-Benzylamidocarboxybutyl)-5-N-
Acetylneuraminic Acid
pdb|1HGH|D Chain D, Hemagglutinin (Bromelain Digested) Complex With
Alpha-2-O-(4'-Benzylamidocarboxybutyl)-5-N-
Acetylneuraminic Acid
pdb|1HGH|F Chain F, Hemagglutinin (Bromelain Digested) Complex With
Alpha-2-O-(4'-Benzylamidocarboxybutyl)-5-N-
Acetylneuraminic Acid
pdb|1HGI|B Chain B, Hemagglutinin (Bromelain Digested) Complexed With
4-O-Acetyl-Alpha-2-O-Methyl-5-Acetyl-Neuraminic Acid
pdb|1HGI|D Chain D, Hemagglutinin (Bromelain Digested) Complexed With
4-O-Acetyl-Alpha-2-O-Methyl-5-Acetyl-Neuraminic Acid
pdb|1HGI|F Chain F, Hemagglutinin (Bromelain Digested) Complexed With
4-O-Acetyl-Alpha-2-O-Methyl-5-Acetyl-Neuraminic Acid
pdb|1HGJ|B Chain B, Hemagglutinin (Bromelain Digested) Complex With
9-Amino-9-Deoxy-Alpha-2-O-Methyl-5-N-Acetyl-Neuraminic
Acid
pdb|1HGJ|D Chain D, Hemagglutinin (Bromelain Digested) Complex With
9-Amino-9-Deoxy-Alpha-2-O-Methyl-5-N-Acetyl-Neuraminic
Acid
pdb|1HGJ|F Chain F, Hemagglutinin (Bromelain Digested) Complex With
9-Amino-9-Deoxy-Alpha-2-O-Methyl-5-N-Acetyl-Neuraminic
Acid
pdb|1HGD|B Chain B, Hemagglutinin (Bromelain Digested) Mutant With Gly 135
Replaced By Arg (G135r) In Ha1 Chains
pdb|1HGD|D Chain D, Hemagglutinin (Bromelain Digested) Mutant With Gly 135
Replaced By Arg (G135r) In Ha1 Chains
pdb|1HGD|F Chain F, Hemagglutinin (Bromelain Digested) Mutant With Gly 135
Replaced By Arg (G135r) In Ha1 Chains
pdb|1EO8|B Chain B, Influenza Virus Hemagglutinin Complexed With A
Neutralizing Antibody
pdb|1HGG|B Chain B, Hemagglutinin (Bromelain Digested) Complex With
Alpha-2,3-Sialyllactose
pdb|1HGG|D Chain D, Hemagglutinin (Bromelain Digested) Complex With
Alpha-2,3-Sialyllactose
pdb|1HGG|F Chain F, Hemagglutinin (Bromelain Digested) Complex With
Alpha-2,3-Sialyllactose
pdb|3HMG|B Chain B, Hemagglutinin (L226(A)Q) (Bromelain Digested) (Mutant With
Leu 226 Replaced By Gln In Ha1 Chains)
pdb|3HMG|D Chain D, Hemagglutinin (L226(A)Q) (Bromelain Digested) (Mutant With
Leu 226 Replaced By Gln In Ha1 Chains)
pdb|3HMG|F Chain F, Hemagglutinin (L226(A)Q) (Bromelain Digested) (Mutant With
Leu 226 Replaced By Gln In Ha1 Chains)
pdb|4HMG|B Chain B, Hemagglutinin (L226(A)Q) (Bromelain Digested) (Mutant With
Leu 226 Replaced By Gln In Ha1 Chains) Complex With
Sialic Acid
pdb|4HMG|D Chain D, Hemagglutinin (L226(A)Q) (Bromelain Digested) (Mutant With
Leu 226 Replaced By Gln In Ha1 Chains) Complex With
Sialic Acid
pdb|4HMG|F Chain F, Hemagglutinin (L226(A)Q) (Bromelain Digested) (Mutant With
Leu 226 Replaced By Gln In Ha1 Chains) Complex With
Sialic Acid
pdb|1HGF|B Chain B, Hemagglutinin (Bromelain Digested)
pdb|1HGF|D Chain D, Hemagglutinin (Bromelain Digested)
pdb|1HGF|F Chain F, Hemagglutinin (Bromelain Digested)
pdb|2HMG|B Chain B, Hemagglutinin (G146(A)D) (Bromelain Digested) (Mutant With
Gly 146 Replaced By Asp In Ha1 Chains)
pdb|2HMG|D Chain D, Hemagglutinin (G146(A)D) (Bromelain Digested) (Mutant With
Gly 146 Replaced By Asp In Ha1 Chains)
pdb|2HMG|F Chain F, Hemagglutinin (G146(A)D) (Bromelain Digested) (Mutant With
Gly 146 Replaced By Asp In Ha1 Chains)
pdb|1KEN|B Chain B, Influenza Virus Hemagglutinin Complexed With An Antibody
That Prevents The Hemagglutinin Low Ph Fusogenic
Transition
pdb|1KEN|D Chain D, Influenza Virus Hemagglutinin Complexed With An Antibody
That Prevents The Hemagglutinin Low Ph Fusogenic
Transition
pdb|1KEN|F Chain F, Influenza Virus Hemagglutinin Complexed With An Antibody
That Prevents The Hemagglutinin Low Ph Fusogenic
Transition
pdb|1QFU|B Chain B, Influenza Virus Hemagglutinin Complexed With A
Neutralizing Antibody
Length = 175
Score = 27.7 bits (60), Expect = 3.8
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 13/90 (14%)
Query: 303 EPTMSVYFAVNDSPLAGLEGKHVT------ANKLKDRLLKEMQTNIAMKCEEMGEGKFKV 356
E T ++ N L LE +H NKL ++ ++++ N EEMG G FK+
Sbjct: 85 EDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFEKTRRQLREN----AEEMGNGCFKI 140
Query: 357 SGRGELQITILAENLRREGFEFSISRPEVI 386
+ + E++R ++ + R E +
Sbjct: 141 YHKCD---NACIESIRNGTYDHDVYRDEAL 167
>pdb|1HA0|A Chain A, Hemagglutinin Precursor Ha0
Length = 494
Score = 27.3 bits (59), Expect = 4.9
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 13/90 (14%)
Query: 303 EPTMSVYFAVNDSPLAGLEGKHVT------ANKLKDRLLKEMQTNIAMKCEEMGEGKFKV 356
E T ++ N L LE +H NKL ++ ++++ N EEMG G FK+
Sbjct: 406 EDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFEKTRRQLREN----AEEMGNGCFKI 461
Query: 357 SGRGELQITILAENLRREGFEFSISRPEVI 386
+ + E++R ++ + R E +
Sbjct: 462 YHKCD---NACIESIRNGTYDHDVYRNEAL 488
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum
pdb|1A6E|A Chain A, Thermosome - Mg-Adp-Alf3 Complex
Length = 545
Score = 26.9 bits (58), Expect = 6.5
Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 16/113 (14%)
Query: 236 VLLMKSDGSKENGRITKLIGFLGLARTEIE--NAYAGDIVAIAGFNAMD------VGDSV 287
+L++K +E G+ + R IE A A + G MD +GD +
Sbjct: 8 ILVLKEGTQREQGKNAQ--------RNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDII 59
Query: 288 VDPANPMPLDPMHLEEPTMSVYFAVNDSPLAGLEGKHVTANKLKDRLLKEMQT 340
+ L M +E PT + V+ + + TA L LLK+ +T
Sbjct: 60 ISNDGATILKEMDVEHPTAKMIVEVSKAQDTAVGDGTTTAVVLSGELLKQAET 112
>pdb|1HDG|O Chain O, Holo-D-Glyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12) (Synchrotron X-Ray Diffraction)
pdb|1HDG|Q Chain Q, Holo-D-Glyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12) (Synchrotron X-Ray Diffraction)
Length = 332
Score = 26.9 bits (58), Expect = 6.5
Identities = 35/134 (26%), Positives = 55/134 (40%), Gaps = 27/134 (20%)
Query: 6 NIAVIAHVDHGKTTLVDGLLSQSGTFSEREKVDERVMD--SNDLERERGITILSKNTAIY 63
+IA I V H K +V G+L+ +++ D+RV+D DL R R
Sbjct: 155 SIAPIVKVLHEKFGIVSGMLTTVHSYTN----DQRVLDLPHKDLRRARA----------- 199
Query: 64 YKDTKINIIDTPGHA--DFGGEVERVLKMVDGVLLLVDAQEGVMPQTKFVVKKALSFGIC 121
+NII T A V V +DG+ + V +G + +V+K +
Sbjct: 200 ---AAVNIIPTTTGAAKAVALVVPEVKGKLDGMAIRVPTPDGSITDLTVLVEKETT---- 252
Query: 122 PIVVVNKIDKPAAE 135
+ VN + K A E
Sbjct: 253 -VEEVNAVMKEATE 265
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 26.9 bits (58), Expect = 6.5
Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 7/89 (7%)
Query: 64 YKDTKINIIDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQ------TKFVVKKALS 117
++ K+NI D G + DG++ +VD+ + Q +V++ L+
Sbjct: 59 HRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRXQDCQRELQSLLVEERLA 118
Query: 118 FGICPIVVVNKIDKPAAEPDRVVDEVFDL 146
G ++ NK D P A + E +L
Sbjct: 119 -GATLLIFANKQDLPGALSXNAIQEALEL 146
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 26.9 bits (58), Expect = 6.5
Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 7/89 (7%)
Query: 64 YKDTKINIIDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQ------TKFVVKKALS 117
++ K+NI D G + DG++ +VD+ + Q +V++ L+
Sbjct: 59 HRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLA 118
Query: 118 FGICPIVVVNKIDKPAAEPDRVVDEVFDL 146
G ++ NK D P A + E +L
Sbjct: 119 -GATLLIFANKQDLPGALSXNAIQEALEL 146
>pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 26.6 bits (57), Expect = 8.4
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 11/80 (13%)
Query: 79 DFGGEVE------RVLKMVDGVLLLVD-AQEGVMPQTKFVVKKALS---FGICPIVVV-N 127
D GG ++ L ++G++ LVD A + ++K + ++ PI+++ N
Sbjct: 75 DLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGN 134
Query: 128 KIDKPAAEPDRVVDEVFDLF 147
KID+P A + + E+F L+
Sbjct: 135 KIDRPEAISEERLREMFGLY 154
>pdb|1FI2|A Chain A, Crystal Structure Of Germin (Oxalate Oxidase)
Length = 201
Score = 26.6 bits (57), Expect = 8.4
Identities = 18/70 (25%), Positives = 31/70 (43%), Gaps = 1/70 (1%)
Query: 271 DIVAIAGFNAMDVGDSVVDPANPMPLDPMHLEEPTMSVYFAVNDSPLAGLEGKHVTANKL 330
D+ G N + V + VD A P +P H+ + + L G+ G + NKL
Sbjct: 60 DVAEWPGTNTLGVSMNRVDFA-PGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKL 118
Query: 331 KDRLLKEMQT 340
R+++ +T
Sbjct: 119 YSRVVRAGET 128
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.317 0.137 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,436,009
Number of Sequences: 13198
Number of extensions: 148464
Number of successful extensions: 406
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 337
Number of HSP's gapped (non-prelim): 49
length of query: 599
length of database: 2,899,336
effective HSP length: 94
effective length of query: 505
effective length of database: 1,658,724
effective search space: 837655620
effective search space used: 837655620
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)