BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645109|ref|NP_207279.1| adenine specific DNA
methyltransferase (MFOKI) [Helicobacter pylori 26695]
(211 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|2DPM|A Chain A, Dpnm Dna Adenine Methyltransferase From... 33 0.024
pdb|1SBP| Sulfate-Binding Protein 26 3.9
pdb|1JT9|A Chain A, Structure Of The Mutant F174a T Form Of... 25 8.7
pdb|1FS5|A Chain A, A Discovery Of Three Alternate Conforma... 25 8.7
pdb|1TYW| Structure Of Tailspike-Protein >gi|2392586|pdb|... 25 8.7
pdb|1PFX|C Chain C, Porcine Factor Ixa 25 8.7
pdb|1H95|A Chain A, Solution Structure Of The Single-Strand... 25 8.7
pdb|1TYV| Structure Of Tailspike-Protein 25 8.7
>pdb|2DPM|A Chain A, Dpnm Dna Adenine Methyltransferase From Streptoccocus
Pneumoniae Complexed With S-Adenosylmethionine
Length = 284
Score = 33.1 bits (74), Expect = 0.024
Identities = 21/69 (30%), Positives = 34/69 (48%), Gaps = 3/69 (4%)
Query: 36 RYGGGKSLAVGLIVECIPNGVRRMISPFIGGGSVEIACAAELGLEVLGFDIFDILVNFYQ 95
++ GGK + +I E IP R PF+GGG++ A + + + D L+N YQ
Sbjct: 16 KWTGGKRQLLPVIRELIPKTYNRYFEPFVGGGALFFDLAPK---DAVINDFNAELINCYQ 72
Query: 96 VLLKDKQAL 104
+ + Q L
Sbjct: 73 QIKDNPQEL 81
>pdb|1SBP| Sulfate-Binding Protein
Length = 310
Score = 25.8 bits (55), Expect = 3.9
Identities = 10/24 (41%), Positives = 15/24 (61%)
Query: 109 LSLEPTRETYNIIKQELKAHYKKE 132
+S +PTRE Y + AH+K+E
Sbjct: 8 VSYDPTRELYEQYNKAFSAHWKQE 31
>pdb|1JT9|A Chain A, Structure Of The Mutant F174a T Form Of The Glucosamine-6-
Phosphate Deaminase From E.Coli
Length = 266
Score = 24.6 bits (52), Expect = 8.7
Identities = 12/57 (21%), Positives = 23/57 (40%)
Query: 143 DYYFNFNLSYGPGFLGWMSKIYTDKQRYLNALLKIKGFNAPSLKVECSSFEEVLLAY 199
D Y + + +M + + D + + NAP + EC +EE + +Y
Sbjct: 72 DEYVGLPKEHPESYYSFMHRNFFDHVDIPAENINLLNGNAPDIDAECRQYEEKIRSY 128
>pdb|1FS5|A Chain A, A Discovery Of Three Alternate Conformations In The Active
Site Of Glucosamine-6-Phosphate Isomerase
pdb|1FS5|B Chain B, A Discovery Of Three Alternate Conformations In The Active
Site Of Glucosamine-6-Phosphate Isomerase
pdb|1FSF|A Chain A, Glucosamine-6-Phosphate Deaminase From E.Coli, T
Conformer, At 1.9a Resolution
pdb|1DEA|A Chain A, Mol_id: 1; Molecule: Glucosamine 6-Phosphate Deaminase;
Chain: A, B; Ec: 5.3.1.10; Engineered: Yes; Heterogen:
Inorganic Phosphate
pdb|1DEA|B Chain B, Mol_id: 1; Molecule: Glucosamine 6-Phosphate Deaminase;
Chain: A, B; Ec: 5.3.1.10; Engineered: Yes; Heterogen:
Inorganic Phosphate
pdb|1FQO|A Chain A, Glucosamine 6-Phosphate Deaminase Complexed With The
Substrate Of The Reverse Reaction Fructose 6-Phosphate
(Open Form)
pdb|1FQO|B Chain B, Glucosamine 6-Phosphate Deaminase Complexed With The
Substrate Of The Reverse Reaction Fructose 6-Phosphate
(Open Form)
pdb|1FRZ|A Chain A, Glucosamine-6-Phosphate Deaminase From E.Coli, R
Conformer. Complexed With The Allosteric Activator
N-Acetyl- Glucosamine-6-Phosphate At 2.2 A Resolution
pdb|1FRZ|B Chain B, Glucosamine-6-Phosphate Deaminase From E.Coli, R
Conformer. Complexed With The Allosteric Activator
N-Acetyl- Glucosamine-6-Phosphate At 2.2 A Resolution
pdb|1FS6|A Chain A, Glucosamine-6-Phosphate Deaminase From E.Coli, T
Conformer, At 2.2a Resolution
pdb|1CD5|A Chain A, Glucosamine-6-Phosphate Deaminase From E.Coli, T Conformer
pdb|1HOT|A Chain A, Glucosamine 6-Phosphate Deaminase Complexed With The
Allosteric Activator N-Acetyl-Glucosamine-6-Phosphate
pdb|1HOT|B Chain B, Glucosamine 6-Phosphate Deaminase Complexed With The
Allosteric Activator N-Acetyl-Glucosamine-6-Phosphate
pdb|1HOR|A Chain A, Mol_id: 1; Molecule: Glucosamine 6-Phosphate Deaminase;
Chain: A, B; Ec: 5.3.1.10; Engineered: Yes; Heterogen:
2-Deoxi-2-Amino-Glucitol 6-Phosphate
pdb|1HOR|B Chain B, Mol_id: 1; Molecule: Glucosamine 6-Phosphate Deaminase;
Chain: A, B; Ec: 5.3.1.10; Engineered: Yes; Heterogen:
2-Deoxi-2-Amino-Glucitol 6-Phosphate
Length = 266
Score = 24.6 bits (52), Expect = 8.7
Identities = 12/57 (21%), Positives = 23/57 (40%)
Query: 143 DYYFNFNLSYGPGFLGWMSKIYTDKQRYLNALLKIKGFNAPSLKVECSSFEEVLLAY 199
D Y + + +M + + D + + NAP + EC +EE + +Y
Sbjct: 72 DEYVGLPKEHPESYYSFMHRNFFDHVDIPAENINLLNGNAPDIDAECRQYEEKIRSY 128
>pdb|1TYW| Structure Of Tailspike-Protein
pdb|1TYU| Structure Of Tailspike-Protein
pdb|1TYX| Title Of Tailspike-Protein
Length = 543
Score = 24.6 bits (52), Expect = 8.7
Identities = 20/85 (23%), Positives = 35/85 (40%), Gaps = 6/85 (7%)
Query: 30 YIKAPLRYGGGKSLAVGLIVECIPNGVRRMISPFIGGGSVEIACAAELGL-----EVLGF 84
YI R G + + + + PN I+ + + +A AE GL G+
Sbjct: 373 YISGACRVNGLRLIGIRSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGY 432
Query: 85 DIFDILVNFYQV-LLKDKQALYNHL 108
D I + +++ D ALY+H+
Sbjct: 433 DSAAIKLRIHKLSKTLDSGALYSHI 457
>pdb|1PFX|C Chain C, Porcine Factor Ixa
Length = 235
Score = 24.6 bits (52), Expect = 8.7
Identities = 14/59 (23%), Positives = 28/59 (46%), Gaps = 1/59 (1%)
Query: 102 QALYNHLLSLEPTRETYNIIKQELKAHYKKECTLDPLILARDYYFNFNLSYGPGFL-GW 159
+A+ +H + + +++I EL + P+ +A Y N L +G G++ GW
Sbjct: 72 RAIPHHSYNATVNKYSHDIALLELDEPLTLNSYVTPICIADKEYTNIFLKFGSGYVSGW 130
>pdb|1H95|A Chain A, Solution Structure Of The Single-Stranded Dna-Binding
Cold Shock Domain (Csd) Of Human Y-Box Protein 1 (Yb1)
Determined By Nmr (10 Lowest Energy Structures)
Length = 79
Score = 24.6 bits (52), Expect = 8.7
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 7 NQNASKKDVFLHNLRSNNGRYKRYIKA 33
N+N +K+DVF+H ++Y+++
Sbjct: 26 NRNDTKEDVFVHQTAIKKNNPRKYLRS 52
>pdb|1TYV| Structure Of Tailspike-Protein
Length = 542
Score = 24.6 bits (52), Expect = 8.7
Identities = 20/85 (23%), Positives = 35/85 (40%), Gaps = 6/85 (7%)
Query: 30 YIKAPLRYGGGKSLAVGLIVECIPNGVRRMISPFIGGGSVEIACAAELGL-----EVLGF 84
YI R G + + + + PN I+ + + +A AE GL G+
Sbjct: 372 YISGACRVNGLRLIGIRSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGY 431
Query: 85 DIFDILVNFYQV-LLKDKQALYNHL 108
D I + +++ D ALY+H+
Sbjct: 432 DSAAIKLRIHKLSKTLDSGALYSHI 456
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.324 0.143 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,317,063
Number of Sequences: 13198
Number of extensions: 56983
Number of successful extensions: 87
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 83
Number of HSP's gapped (non-prelim): 8
length of query: 211
length of database: 2,899,336
effective HSP length: 84
effective length of query: 127
effective length of database: 1,790,704
effective search space: 227419408
effective search space used: 227419408
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)