BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645110|ref|NP_207280.1| hypothetical protein
[Helicobacter pylori 26695]
         (170 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1FR1|B  Chain B, Refined Crystal Structure Of Beta-Lacta...    26  2.7

>pdb|1FR1|B Chain B, Refined Crystal Structure Of Beta-Lactamase From
           Citrobacter Freundii Indicates A Mechanism For
           Beta-Lactam Hydrolysis
 pdb|1FR6|A Chain A, Refined Crystal Structure Of Beta-Lactamase From
           Citrobacter Freundii Indicates A Mechanism For
           Beta-Lactam Hydrolysis
 pdb|1FR6|B Chain B, Refined Crystal Structure Of Beta-Lactamase From
           Citrobacter Freundii Indicates A Mechanism For
           Beta-Lactam Hydrolysis
 pdb|1FR1|A Chain A, Refined Crystal Structure Of Beta-Lactamase From
           Citrobacter Freundii Indicates A Mechanism For
           Beta-Lactam Hydrolysis
          Length = 361

 Score = 25.8 bits (55), Expect = 2.7
 Identities = 14/42 (33%), Positives = 21/42 (49%), Gaps = 8/42 (19%)

Query: 108 AKIEFYMIYQPNFETQVK--------GLFGFCAIKDASISYK 141
           A + FY  +QP +    K        GLFG  A+K + +SY+
Sbjct: 130 ALLRFYQNWQPQWAPGAKRLYANSSIGLFGALAVKPSGMSYE 171



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.318    0.137    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,025,405
Number of Sequences: 13198
Number of extensions: 41738
Number of successful extensions: 87
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 87
Number of HSP's gapped (non-prelim): 1
length of query: 170
length of database: 2,899,336
effective HSP length: 82
effective length of query: 88
effective length of database: 1,817,100
effective search space: 159904800
effective search space used: 159904800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)