BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645111|ref|NP_207281.1| hypothetical protein
[Helicobacter pylori 26695]
(250 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|2GAC|B Chain B, T152c Mutant Glycosylasparaginase From ... 30 0.34
pdb|9GAC|A Chain A, Precursor Of The T152c Mutant Glycosyla... 30 0.34
pdb|1AYY|D Chain D, Glycosylasparaginase >gi|3212475|pdb|1A... 30 0.34
pdb|9GAA|A Chain A, Precursor Of The T152a Mutant Glycosyla... 30 0.34
pdb|9GAF|C Chain C, Precursor Of The W11f Mutant Glycosylas... 30 0.34
pdb|3PJR|A Chain A, Helicase Substrate Complex >gi|2781090|... 29 0.45
pdb|2PJR|F Chain F, Helicase Product Complex >gi|9257172|pd... 29 0.45
pdb|1QHH|B Chain B, Structure Of Dna Helicase With Adpnp 29 0.59
pdb|1KU1|A Chain A, Crystal Structure Of The Sec7 Domain Of... 27 2.9
pdb|1H1L|B Chain B, Nitrogenase Mo-Fe Protein From Klebsiel... 26 3.8
pdb|1L9V|A Chain A, Non Structural Protein Encoded By Gene ... 26 5.0
pdb|1DIY|A Chain A, Crystal Structure Of Arachidonic Acid B... 26 5.0
pdb|1PGE|A Chain A, Prostaglandin H2 Synthase-1 Complexed W... 26 5.0
pdb|1EQG|A Chain A, The 2.6 Angstrom Model Of Ovine Cox-1 C... 26 5.0
pdb|1HT8|A Chain A, The 2.7 Angstrom Resolution Model Of Ov... 26 5.0
pdb|1EBV|A Chain A, Ovine Pghs-1 Complexed With Salicyl Hyd... 26 5.0
pdb|1PRH|A Chain A, Prostaglandin H2 Synthase-1 (Cyclooxyge... 26 5.0
pdb|1DBH|A Chain A, Dbl And Pleckstrin Homology Domains Fro... 25 8.5
>pdb|2GAC|B Chain B, T152c Mutant Glycosylasparaginase From Flavobacterium
Meningosepticum
pdb|2GAC|D Chain D, T152c Mutant Glycosylasparaginase From Flavobacterium
Meningosepticum
Length = 144
Score = 29.6 bits (65), Expect = 0.34
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 81 KIVDTHIIYKLNNQGRRPEEVC 102
+ V TH++ +L NQGR P++ C
Sbjct: 60 RTVGTHLVVELMNQGRTPQQAC 81
>pdb|9GAC|A Chain A, Precursor Of The T152c Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
pdb|9GAC|C Chain C, Precursor Of The T152c Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
Length = 295
Score = 29.6 bits (65), Expect = 0.34
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 81 KIVDTHIIYKLNNQGRRPEEVC 102
+ V TH++ +L NQGR P++ C
Sbjct: 211 RTVGTHLVVELMNQGRTPQQAC 232
>pdb|1AYY|D Chain D, Glycosylasparaginase
pdb|1AYY|B Chain B, Glycosylasparaginase
pdb|2GAW|B Chain B, Wild Type Glycosylasparaginase From Flavobacterium
Meningosepticum
pdb|2GAW|D Chain D, Wild Type Glycosylasparaginase From Flavobacterium
Meningosepticum
Length = 144
Score = 29.6 bits (65), Expect = 0.34
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 81 KIVDTHIIYKLNNQGRRPEEVC 102
+ V TH++ +L NQGR P++ C
Sbjct: 60 RTVGTHLVVELMNQGRTPQQAC 81
>pdb|9GAA|A Chain A, Precursor Of The T152a Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
pdb|9GAA|C Chain C, Precursor Of The T152a Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
Length = 295
Score = 29.6 bits (65), Expect = 0.34
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 81 KIVDTHIIYKLNNQGRRPEEVC 102
+ V TH++ +L NQGR P++ C
Sbjct: 211 RTVGTHLVVELMNQGRTPQQAC 232
>pdb|9GAF|C Chain C, Precursor Of The W11f Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
pdb|9GAF|A Chain A, Precursor Of The W11f Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
Length = 295
Score = 29.6 bits (65), Expect = 0.34
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 81 KIVDTHIIYKLNNQGRRPEEVC 102
+ V TH++ +L NQGR P++ C
Sbjct: 211 RTVGTHLVVELMNQGRTPQQAC 232
>pdb|3PJR|A Chain A, Helicase Substrate Complex
pdb|1PJR| Structure Of Dna Helicase
pdb|1QHG|A Chain A, Structure Of Dna Helicase Mutant With Adpnp
Length = 724
Score = 29.3 bits (64), Expect = 0.45
Identities = 40/180 (22%), Positives = 73/180 (40%), Gaps = 23/180 (12%)
Query: 29 KDIQPCVDFNDLNALKKRLI--EIFSAINSIYCFK-----YNEYELECFFKNSIE----- 76
K +P ++A K L+ E F+ S Y K Y EY+ +S++
Sbjct: 137 KKFEPRTILGTISAAKNELLPPEQFAKRASTYYEKVVSDVYQEYQQRLLRNHSLDFDDLI 196
Query: 77 ----RVFSKIVDTHIIYKLNNQGRRPEEVCFSWMRGFLV----AEFFKDFIACLFSAQKE 128
++F ++ D Y+ Q +E + + + AE F++ C +
Sbjct: 197 MTTIQLFDRVPDVLHYYQYKFQYIHIDEYQDTNRAQYTLVKKLAERFQNI--CAVGDADQ 254
Query: 129 TIKFFGGDNFENIESFKRS-PKADFLLDNHLLLEVQSDFQGINDIKEHKVLEAKRRLITD 187
+I + G + +NI SF+R P A +L + Q N++ EH V +R+ T+
Sbjct: 255 SIYRWRGADIQNILSFERDYPNAKVILLEQNYRSTKRILQAANEVIEHNVNRKPKRIWTE 314
>pdb|2PJR|F Chain F, Helicase Product Complex
pdb|2PJR|A Chain A, Helicase Product Complex
Length = 548
Score = 29.3 bits (64), Expect = 0.45
Identities = 40/180 (22%), Positives = 73/180 (40%), Gaps = 23/180 (12%)
Query: 29 KDIQPCVDFNDLNALKKRLI--EIFSAINSIYCFK-----YNEYELECFFKNSIE----- 76
K +P ++A K L+ E F+ S Y K Y EY+ +S++
Sbjct: 137 KKFEPRTILGTISAAKNELLPPEQFAKRASTYYEKVVSDVYQEYQQRLLRNHSLDFDDLI 196
Query: 77 ----RVFSKIVDTHIIYKLNNQGRRPEEVCFSWMRGFLV----AEFFKDFIACLFSAQKE 128
++F ++ D Y+ Q +E + + + AE F++ C +
Sbjct: 197 MTTIQLFDRVPDVLHYYQYKFQYIHIDEYQDTNRAQYTLVKKLAERFQNI--CAVGDADQ 254
Query: 129 TIKFFGGDNFENIESFKRS-PKADFLLDNHLLLEVQSDFQGINDIKEHKVLEAKRRLITD 187
+I + G + +NI SF+R P A +L + Q N++ EH V +R+ T+
Sbjct: 255 SIYRWRGADIQNILSFERDYPNAKVILLEQNYRSTKRILQAANEVIEHNVNRKPKRIWTE 314
>pdb|1QHH|B Chain B, Structure Of Dna Helicase With Adpnp
Length = 273
Score = 28.9 bits (63), Expect = 0.59
Identities = 21/78 (26%), Positives = 37/78 (46%), Gaps = 3/78 (3%)
Query: 111 VAEFFKDFIACLFSAQKETIKFFGGDNFENIESFKRS-PKADFLLDNHLLLEVQSDFQGI 169
+AE F++ C ++I + G + +NI SF+R P A +L + Q
Sbjct: 72 LAERFQNI--CAVGDADQSIYRWRGADIQNILSFERDYPNAKVILLEQNYRSTKRILQAA 129
Query: 170 NDIKEHKVLEAKRRLITD 187
N++ EH V +R+ T+
Sbjct: 130 NEVIEHNVNRKPKRIWTE 147
>pdb|1KU1|A Chain A, Crystal Structure Of The Sec7 Domain Of Yeast Gea2
pdb|1KU1|B Chain B, Crystal Structure Of The Sec7 Domain Of Yeast Gea2
Length = 230
Score = 26.6 bits (57), Expect = 2.9
Identities = 32/129 (24%), Positives = 55/129 (41%), Gaps = 12/129 (9%)
Query: 107 RGFLVAEFFKDFIACLFSAQKETIKFFGGDNFENIESFKRSPKADFLLDNHLLLEVQSDF 166
+GF+ ++ KD LF+ N + I P LL+ ++ L DF
Sbjct: 48 KGFIASDSDKDIAEFLFNNNNRM-------NKKTIGLLLCHPDKVSLLNEYIRL---FDF 97
Query: 167 QGINDIKEHKVLEAKRRLI--TDKVPTIVVHFDLFNGQVACVEISKIKDNDLNWITRQQM 224
G+ + ++L K RL + ++ I+ F + + SKI DN + I+ Q
Sbjct: 98 SGLRVDEAIRILLTKFRLPGESQQIERIIEAFSSAYCENQDYDPSKISDNAEDDISTVQP 157
Query: 225 EGQSVFNIS 233
+ SVF +S
Sbjct: 158 DADSVFILS 166
>pdb|1H1L|B Chain B, Nitrogenase Mo-Fe Protein From Klebsiella Pneumoniae, Nifv
Mutant
pdb|1H1L|D Chain D, Nitrogenase Mo-Fe Protein From Klebsiella Pneumoniae, Nifv
Mutant
pdb|1QH8|D Chain D, Nitrogenase Mofe Protein From Klebsiella Pneumoniae, As-
Crystallized (Mixed Oxidation) State
pdb|1QH1|D Chain D, Nitrogenase Mofe Protein From Klebsiella Pneumoniae,
Phenosafranin Oxidized State
pdb|1QGU|D Chain D, Nitrogenase Mo-Fe Protein From Klebsiella Pneumoniae,
Dithionite-Reduced State
pdb|1QH8|B Chain B, Nitrogenase Mofe Protein From Klebsiella Pneumoniae, As-
Crystallized (Mixed Oxidation) State
pdb|1QGU|B Chain B, Nitrogenase Mo-Fe Protein From Klebsiella Pneumoniae,
Dithionite-Reduced State
pdb|1QH1|B Chain B, Nitrogenase Mofe Protein From Klebsiella Pneumoniae,
Phenosafranin Oxidized State
Length = 519
Score = 26.2 bits (56), Expect = 3.8
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 102 CFSWMRGFLVAEFFKDFIACLFSAQKETIKFFGGDNFENI 141
C ++ R + FK+ IAC+ + E FGG+N N+
Sbjct: 93 CVAYFRTYF-NRHFKEPIACVSDSMTEDAAVFGGNNNMNL 131
>pdb|1L9V|A Chain A, Non Structural Protein Encoded By Gene Segment 8 Of
Rotavirus (Nsp2), An Ntpase, Ssrna Binding And Nucleic
Acid Helix-Destabilizing Protein
Length = 317
Score = 25.8 bits (55), Expect = 5.0
Identities = 11/27 (40%), Positives = 18/27 (65%)
Query: 224 MEGQSVFNISQNFFDYKITEIPNKPLS 250
+E Q + + QNF +YK+T +KP+S
Sbjct: 172 LEHQLMPILDQNFIEYKVTLNEDKPIS 198
>pdb|1DIY|A Chain A, Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Active Site Of Pghs-1
Length = 553
Score = 25.8 bits (55), Expect = 5.0
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 7 FKDYRKLLGFGSQNAFKEFLGAKDIQPCVD--FNDLNALK 44
F +YRK G +F+E G K++ ++ + D++AL+
Sbjct: 432 FNEYRKRFGMKPYTSFQELTGEKEMAAELEELYGDIDALE 471
>pdb|1PGE|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl)hydrotropic Acid (Iodosuprofen)
pdb|1PGE|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl)hydrotropic Acid (Iodosuprofen)
pdb|1PGF|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5-Methoxy-2-Methylindole-3-Acetic Acid
(Iodoindomethacin), Cis Model
pdb|1PGF|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5-Methoxy-2-Methylindole-3-Acetic Acid
(Iodoindomethacin), Cis Model
pdb|1PGG|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5-Methoxy-2-Methylindole-3-Acetic Acid
(Iodoindomethacin), Trans Model
pdb|1PGG|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5-Methoxy-2-Methylindole-3-Acetic Acid
(Iodoindomethacin), Trans Model
pdb|1PTH| Dioxygenase, Peroxidase Mol_id: 1; Molecule: Prostaglandin H2
Synthase-1; Chain: Null; Synonym: Cyclooxygenase I; Ec:
1.14.99.1
pdb|1FE2|A Chain A, Crystal Structure Of Dihomo-Gamma-Linoleic Acid Bound In
The Cyclooxygenase Channel Of Prostaglandin Endoperoxide
H Synthase-1.
pdb|1IGZ|A Chain A, Crystal Structure Of Linoleic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1.
pdb|1IGX|A Chain A, Crystal Structure Of Eicosapentanoic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1
Length = 576
Score = 25.8 bits (55), Expect = 5.0
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 7 FKDYRKLLGFGSQNAFKEFLGAKDIQPCVD--FNDLNALK 44
F +YRK G +F+E G K++ ++ + D++AL+
Sbjct: 439 FNEYRKRFGMKPYTSFQELTGEKEMAAELEELYGDIDALE 478
>pdb|1EQG|A Chain A, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQG|B Chain B, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQH|A Chain A, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
pdb|1EQH|B Chain B, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
pdb|1CQE|B Chain B, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
pdb|1CQE|A Chain A, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
Length = 580
Score = 25.8 bits (55), Expect = 5.0
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 7 FKDYRKLLGFGSQNAFKEFLGAKDIQPCVD--FNDLNALK 44
F +YRK G +F+E G K++ ++ + D++AL+
Sbjct: 443 FNEYRKRFGMKPYTSFQELTGEKEMAAELEELYGDIDALE 482
>pdb|1HT8|A Chain A, The 2.7 Angstrom Resolution Model Of Ovine Cox-1 Complexed
With Alclofenac
pdb|1HT8|B Chain B, The 2.7 Angstrom Resolution Model Of Ovine Cox-1 Complexed
With Alclofenac
pdb|1HT5|A Chain A, The 2.75 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Methyl Ester Flurbiprofen
pdb|1HT5|B Chain B, The 2.75 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Methyl Ester Flurbiprofen
Length = 551
Score = 25.8 bits (55), Expect = 5.0
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 7 FKDYRKLLGFGSQNAFKEFLGAKDIQPCVD--FNDLNALK 44
F +YRK G +F+E G K++ ++ + D++AL+
Sbjct: 431 FNEYRKRFGMKPYTSFQELTGEKEMAAELEELYGDIDALE 470
>pdb|1EBV|A Chain A, Ovine Pghs-1 Complexed With Salicyl Hydroxamic Acid
Length = 551
Score = 25.8 bits (55), Expect = 5.0
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 7 FKDYRKLLGFGSQNAFKEFLGAKDIQPCVD--FNDLNALK 44
F +YRK G +F+E G K++ ++ + D++AL+
Sbjct: 431 FNEYRKRFGMKPYTSFQELTGEKEMAAELEELYGDIDALE 470
>pdb|1PRH|A Chain A, Prostaglandin H2 Synthase-1 (Cyclooxygenase I)
pdb|1PRH|B Chain B, Prostaglandin H2 Synthase-1 (Cyclooxygenase I)
Length = 554
Score = 25.8 bits (55), Expect = 5.0
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 7 FKDYRKLLGFGSQNAFKEFLGAKDIQPCVD--FNDLNALK 44
F +YRK G +F+E G K++ ++ + D++AL+
Sbjct: 431 FNEYRKRFGMKPYTSFQELTGEKEMAAELEELYGDIDALE 470
>pdb|1DBH|A Chain A, Dbl And Pleckstrin Homology Domains From Hsos1
Length = 354
Score = 25.0 bits (53), Expect = 8.5
Identities = 9/17 (52%), Positives = 12/17 (69%)
Query: 70 FFKNSIERVFSKIVDTH 86
F N +E +FS+IVD H
Sbjct: 40 FSANDVENIFSRIVDIH 56
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.325 0.142 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,451,418
Number of Sequences: 13198
Number of extensions: 57390
Number of successful extensions: 160
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 152
Number of HSP's gapped (non-prelim): 21
length of query: 250
length of database: 2,899,336
effective HSP length: 86
effective length of query: 164
effective length of database: 1,764,308
effective search space: 289346512
effective search space used: 289346512
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)