BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|15644680|ref|NP_206850.1| hypothetical protein [Helicobacter pylori 26695] (330 letters) Database: /var/www/html/HP/blast_new/blast/db/pdbaa 13,198 sequences; 2,899,336 total letters Searching...........................done



                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1F8S|A  Chain A, Crystal Structure Of L-Amino Acid Oxida...    32  0.13
pdb|1QNI|A  Chain A, Crystal Structure Of Nitrous Oxide Redu...    31  0.22
pdb|1JSM|A  Chain A, Structure Of H5 Avian Haemagglutinin >g...    30  0.29
pdb|2GSA|A  Chain A, Crystal Structure Of Glutamate-1-Semial...    27  2.5
pdb|1I9S|A  Chain A, Crystal Structure Of The Rna Triphospha...    27  4.2
pdb|1KW2|A  Chain A, Crystal Structure Of Uncomplexed Vitami...    26  5.5
pdb|1LOT|A  Chain A, Crystal Structure Of The Complex Of Act...    26  5.5
pdb|1J93|A  Chain A, Crystal Structure And Substrate Binding...    26  5.5
pdb|1RYP|D  Chain D, Crystal Structure Of The 20s Proteasome...    26  7.1
pdb|1G0U|C  Chain C, A Gated Channel Into The Proteasome Cor...    26  7.1
pdb|1FNT|D  Chain D, Crystal Structure Of The 20s Proteasome...    26  7.1
pdb|1L1L|A  Chain A, Crystal Structure Of B-12 Dependent (Cl...    25  9.3
pdb|1YRG|A  Chain A, The Crystal Structure Of Rna1p: A New F...    25  9.3
pdb|1K5D|C  Chain C, Crystal Structure Of Ran-Gppnhp-Ranbp1-...    25  9.3

>pdb|1F8S|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
           Calloselasma Rhodostoma, Complexed With Three Molecules
           Of O- Aminobenzoate.
 pdb|1F8S|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
           Calloselasma Rhodostoma, Complexed With Three Molecules
           Of O- Aminobenzoate.
 pdb|1F8S|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
           Calloselasma Rhodostoma, Complexed With Three Molecules
           Of O- Aminobenzoate.
 pdb|1F8S|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
           Calloselasma Rhodostoma, Complexed With Three Molecules
           Of O- Aminobenzoate.
 pdb|1F8S|E Chain E, Crystal Structure Of L-Amino Acid Oxidase From
           Calloselasma Rhodostoma, Complexed With Three Molecules
           Of O- Aminobenzoate.
 pdb|1F8S|F Chain F, Crystal Structure Of L-Amino Acid Oxidase From
           Calloselasma Rhodostoma, Complexed With Three Molecules
           Of O- Aminobenzoate.
 pdb|1F8S|G Chain G, Crystal Structure Of L-Amino Acid Oxidase From
           Calloselasma Rhodostoma, Complexed With Three Molecules
           Of O- Aminobenzoate.
 pdb|1F8S|H Chain H, Crystal Structure Of L-Amino Acid Oxidase From
           Calloselasma Rhodostoma, Complexed With Three Molecules
           Of O- Aminobenzoate.
 pdb|1F8R|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
           Calloselasma Rhodostoma Complexed With Citrate
 pdb|1F8R|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
           Calloselasma Rhodostoma Complexed With Citrate
 pdb|1F8R|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
           Calloselasma Rhodostoma Complexed With Citrate
 pdb|1F8R|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
           Calloselasma Rhodostoma Complexed With Citrate
          Length = 498

 Score = 31.6 bits (70), Expect = 0.13
 Identities = 47/202 (23%), Positives = 78/202 (38%), Gaps = 37/202 (18%)

Query: 104 NGWGLKYPSNLDNQVNFKLKSLGFLKHPLKTMPYILEGGSIESDGAGSVLTNTQCLLEKN 163
           N W   +  N+  +V    K  G LK+P+K        G +  +  G V+        K 
Sbjct: 118 NAW--YFIKNIRKKVGEVKKDPGLLKYPVKPSEAGKSAGQLYEESLGKVVEEL-----KR 170

Query: 164 RNPHLNQNGIENMLKKELGAKQVLWYSYGYLKGDDTDSHTDTLARFLDKDTIVY-STCED 222
            N     N  +    KE   K+          GD +    D +   L++D+  Y S  E 
Sbjct: 171 TNCSYILNKYDTYSTKEYLIKE----------GDLSPGAVDMIGDLLNEDSGYYVSFIES 220

Query: 223 ENDEHYTALKKMQEELKTFKKLDGTPYKLIPLEIPKAIFDENQQRLPATYVNFLLCNNAL 282
              +   A +K  +E+     +DG        ++P A++ + Q +     V+F   N  +
Sbjct: 221 LKHDDIFAYEKRFDEI-----VDGMD------KLPTAMYRDIQDK-----VHF---NAQV 261

Query: 283 IVPTYNDPKDALILETLKQHTP 304
           I    ND K  ++ ETL + TP
Sbjct: 262 IKIQQNDQKVTVVYETLSKETP 283

>pdb|1QNI|A Chain A, Crystal Structure Of Nitrous Oxide Reductase From
           Pseudomonas Nautica, At 2.4a Resolution
 pdb|1QNI|B Chain B, Crystal Structure Of Nitrous Oxide Reductase From
           Pseudomonas Nautica, At 2.4a Resolution
 pdb|1QNI|C Chain C, Crystal Structure Of Nitrous Oxide Reductase From
           Pseudomonas Nautica, At 2.4a Resolution
 pdb|1QNI|D Chain D, Crystal Structure Of Nitrous Oxide Reductase From
           Pseudomonas Nautica, At 2.4a Resolution
 pdb|1QNI|E Chain E, Crystal Structure Of Nitrous Oxide Reductase From
           Pseudomonas Nautica, At 2.4a Resolution
 pdb|1QNI|F Chain F, Crystal Structure Of Nitrous Oxide Reductase From
           Pseudomonas Nautica, At 2.4a Resolution
          Length = 581

 Score = 30.8 bits (68), Expect = 0.22
 Identities = 36/152 (23%), Positives = 61/152 (39%), Gaps = 23/152 (15%)

Query: 172 GIENMLKKELGAKQVLWYSYGYLKGDDTDSHTD-TLARFLDKDTIVYSTCEDENDEHYTA 230
           GI N  K+ LG  Q       YL GD    H   T  R+  K   +       ND+  T 
Sbjct: 58  GITNESKEILGGDQQ------YLNGDCHHPHISMTDGRYDGKYLFI-------NDKANTR 104

Query: 231 LKKMQEELKTFKKLDGTPYKLIPLEIPKAIFDENQQRLPATYVNFLLCNNALIVPTYNDP 290
           + +++ ++    K+   P         +AI     Q++P T  N++ CN   ++P  ND 
Sbjct: 105 VARIRLDIMKTDKITHIPNV-------QAIHGLRLQKVPKT--NYVFCNAEFVIPQPNDG 155

Query: 291 KDALILETLKQHTPLEVIGVDCNTLIKQHGSL 322
            D  +  +    T ++   +D    +   G+L
Sbjct: 156 TDFSLDNSYTMFTAIDAETMDVAWQVIVDGNL 187

>pdb|1JSM|A Chain A, Structure Of H5 Avian Haemagglutinin
 pdb|1JSN|A Chain A, Structure Of Avian H5 Haemagglutinin Complexed With Lsta
           Receptro Analog
 pdb|1JSO|A Chain A, Structure Of Avian H5 Haemagglutinin Bound To Lstc
           Receptor Analog
          Length = 325

 Score = 30.4 bits (67), Expect = 0.29
 Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 11/96 (11%)

Query: 153 LTNTQCLLEKNRNPHL-NQNGIENMLKKELGAKQVLWYSYGYLKGD---DTDSHTDTLAR 208
           +T+ Q +LEK  N  L + NG++ ++ ++           G+L G+   D   +    + 
Sbjct: 26  VTHAQDILEKTHNGKLCDLNGVKPLILRDCSVA-------GWLLGNPMCDEFLNVPEWSY 78

Query: 209 FLDKDTIVYSTCEDENDEHYTALKKMQEELKTFKKL 244
            ++KD  V   C  EN   Y  LK +      F+K+
Sbjct: 79  IVEKDNPVNGLCYPENFNDYEELKHLLSSTNHFEKI 114

>pdb|2GSA|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
           (Aminotransferase, Wild-Type Form)
 pdb|2GSA|B Chain B, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
           (Aminotransferase, Wild-Type Form)
 pdb|4GSA|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
           (Aminotransferase) Reduced With Cyanoborohydrate
 pdb|4GSA|B Chain B, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
           (Aminotransferase) Reduced With Cyanoborohydrate
 pdb|3GSB|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
           In Complex With Gabaculine
 pdb|3GSB|B Chain B, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
           In Complex With Gabaculine
          Length = 432

 Score = 27.3 bits (59), Expect = 2.5
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 8/57 (14%)

Query: 247 TPYKLIPLEIPKAIFDENQQRLPATYVNFLLCNNALIVPTYNDPKDALILETLKQHT 303
           TPY    LE  KA+F EN   +    +  ++ N+  IVP      DA  LE L++ T
Sbjct: 186 TPYN--DLEAVKALFAENPGEIAGVILEPIVGNSGFIVP------DAGFLEGLREIT 234

>pdb|1I9S|A Chain A, Crystal Structure Of The Rna Triphosphatase Domain Of
           Mouse Mrna Capping Enzyme
          Length = 210

 Score = 26.6 bits (57), Expect = 4.2
 Identities = 27/108 (25%), Positives = 39/108 (36%), Gaps = 7/108 (6%)

Query: 218 STCEDENDEHYTALKKMQEELKTFKKLDGTPYKLIPLEIPKAIFDENQQRLPATYVNFLL 277
           S   +EN  H + L    + LK    L      L+ L      +D N           L 
Sbjct: 37  SQVAEENRFHPSMLSNYLKSLKVKMSL------LVDLTNTSRFYDRNDIEKEGIKYIKLQ 90

Query: 278 CNNALIVPTYNDPKDALIL-ETLKQHTPLEVIGVDCNTLIKQHGSLHC 324
           C      PT  + +  + L E   + +P E+IGV C     + G L C
Sbjct: 91  CKGHGECPTTENTETFIRLCERFNERSPPELIGVHCTHGFNRTGFLIC 138

>pdb|1KW2|A Chain A, Crystal Structure Of Uncomplexed Vitamin D-Binding Protein
 pdb|1KW2|B Chain B, Crystal Structure Of Uncomplexed Vitamin D-Binding Protein
 pdb|1KXP|D Chain D, Crystal Structure Of Human Vitamin D-Binding Protein In
           Complex With Skeletal Actin
          Length = 458

 Score = 26.2 bits (56), Expect = 5.5
 Identities = 18/59 (30%), Positives = 26/59 (43%), Gaps = 3/59 (5%)

Query: 206 LARFLDKDTIVYSTCEDENDEHYTALKKMQEELKTFKKLDGTPYKLIPLEIPKAIFDEN 264
           L+ F+DK       C D ++  +T  KK   E    K  D TP +L  L   ++ F  N
Sbjct: 380 LSSFIDKGQ---ELCADYSENTFTEYKKKLAERLKAKLPDATPKELAKLVNKRSDFASN 435

>pdb|1LOT|A Chain A, Crystal Structure Of The Complex Of Actin With Vitamin D-
           Binding Protein
 pdb|1J7E|B Chain B, A Structural Basis For The Unique Binding Features Of The
           Human Vitamin D-Binding Protein
 pdb|1J7E|A Chain A, A Structural Basis For The Unique Binding Features Of The
           Human Vitamin D-Binding Protein
 pdb|1J78|B Chain B, Crystallographic Analysis Of The Human Vitamin D Binding
           Protein
 pdb|1J78|A Chain A, Crystallographic Analysis Of The Human Vitamin D Binding
           Protein
          Length = 458

 Score = 26.2 bits (56), Expect = 5.5
 Identities = 18/59 (30%), Positives = 26/59 (43%), Gaps = 3/59 (5%)

Query: 206 LARFLDKDTIVYSTCEDENDEHYTALKKMQEELKTFKKLDGTPYKLIPLEIPKAIFDEN 264
           L+ F+DK       C D ++  +T  KK   E    K  D TP +L  L   ++ F  N
Sbjct: 380 LSSFIDKGQ---ELCADYSENTFTEYKKKLAERLKAKLPDATPTELAKLVNKRSDFASN 435

>pdb|1J93|A Chain A, Crystal Structure And Substrate Binding Modeling Of The
           Uroporphyrinogen-Iii Decarboxylase From Nicotiana
           Tabacum: Implications For The Catalytic Mechanism
          Length = 353

 Score = 26.2 bits (56), Expect = 5.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 114 LDNQVNFKLKSLGFLKHPLKTMPYILEGGS 143
           L  +VN +   LGF+  P     Y++EGGS
Sbjct: 137 LRKEVNNQAAVLGFVGAPFTLASYVVEGGS 166

>pdb|1RYP|D Chain D, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
           Angstroms Resolution
 pdb|1RYP|R Chain R, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
           Angstroms Resolution
 pdb|1G65|C Chain C, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
           Molecular Basis For Selectivity Of
           Alpha,Beta-Epoxyketone Proteasome Inhibitors
 pdb|1G65|Q Chain Q, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
           Molecular Basis For Selectivity Of
           Alpha,Beta-Epoxyketone Proteasome Inhibitors
 pdb|1JD2|C Chain C, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
           Complex: A Non-Covalent Proteasome Inhibitor
 pdb|1JD2|X Chain X, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
           Complex: A Non-Covalent Proteasome Inhibitor
          Length = 241

 Score = 25.8 bits (55), Expect = 7.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 28  CIKEARESFLNIIQTIAKHAKVLVCVHTNDII 59
           C+K    S L ++QT AK+ ++ V    +DI+
Sbjct: 189 CVKLTVRSLLEVVQTGAKNIEITVVKPDSDIV 220

>pdb|1G0U|C Chain C, A Gated Channel Into The Proteasome Core Particle
 pdb|1G0U|Q Chain Q, A Gated Channel Into The Proteasome Core Particle
          Length = 243

 Score = 25.8 bits (55), Expect = 7.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 28  CIKEARESFLNIIQTIAKHAKVLVCVHTNDII 59
           C+K    S L ++QT AK+ ++ V    +DI+
Sbjct: 191 CVKLTVRSLLEVVQTGAKNIEITVVKPDSDIV 222

>pdb|1FNT|D Chain D, Crystal Structure Of The 20s Proteasome From Yeast In
           Complex With The Proteasome Activator Pa26 From
           Trypanosome Brucei At 3.2 Angstroms Resolution
 pdb|1FNT|R Chain R, Crystal Structure Of The 20s Proteasome From Yeast In
           Complex With The Proteasome Activator Pa26 From
           Trypanosome Brucei At 3.2 Angstroms Resolution
          Length = 254

 Score = 25.8 bits (55), Expect = 7.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 28  CIKEARESFLNIIQTIAKHAKVLVCVHTNDII 59
           C+K    S L ++QT AK+ ++ V    +DI+
Sbjct: 191 CVKLTVRSLLEVVQTGAKNIEITVVKPDSDIV 222

>pdb|1L1L|A Chain A, Crystal Structure Of B-12 Dependent (Class Ii)
           Ribonucleotide Reductase
 pdb|1L1L|B Chain B, Crystal Structure Of B-12 Dependent (Class Ii)
           Ribonucleotide Reductase
 pdb|1L1L|C Chain C, Crystal Structure Of B-12 Dependent (Class Ii)
           Ribonucleotide Reductase
 pdb|1L1L|D Chain D, Crystal Structure Of B-12 Dependent (Class Ii)
           Ribonucleotide Reductase
          Length = 739

 Score = 25.4 bits (54), Expect = 9.3
 Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 11/99 (11%)

Query: 159 LLEKNRNPHLNQNGIENMLKKELGAKQVLWYSYGYLKGDDTDSHTDTLARFLDKDTI--- 215
           +++KNR   ++ +GI++ L   LG + V     G+    D ++H        DK  I   
Sbjct: 463 IIQKNRRIGISMSGIQDWLLTRLGNRVVT----GFKDDFDPETHEAIKVPVYDKRAIKMV 518

Query: 216 --VYSTCEDENDEHYTALKKMQEELK-TFKKLDGTPYKL 251
             +Y     + D+ Y+      E +K T  K  GT  KL
Sbjct: 519 DQLYKAVV-KADQDYSKTLGCNESIKHTTVKPSGTVAKL 556

>pdb|1YRG|A Chain A, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
           Activating Protein
 pdb|1YRG|B Chain B, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
           Activating Protein
          Length = 385

 Score = 25.4 bits (54), Expect = 9.3
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 255 EIPKAIFDENQQRLPATYVNFLLCNNALIVPTYNDPKDALILETLKQHTPLEVIGVDCNT 314
           EIP+A+    Q  L    ++ +  ++    PT  +P    +++ L +HTPLE + +  N 
Sbjct: 77  EIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEP----LIDFLSKHTPLEHLYLHNNG 132

Query: 315 LIKQHGS 321
           L  Q G+
Sbjct: 133 LGPQAGA 139

>pdb|1K5D|C Chain C, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
 pdb|1K5D|F Chain F, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
 pdb|1K5D|I Chain I, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
 pdb|1K5D|L Chain L, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
 pdb|1K5G|C Chain C, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
 pdb|1K5G|F Chain F, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
 pdb|1K5G|I Chain I, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
 pdb|1K5G|L Chain L, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
          Length = 386

 Score = 25.4 bits (54), Expect = 9.3
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 255 EIPKAIFDENQQRLPATYVNFLLCNNALIVPTYNDPKDALILETLKQHTPLEVIGVDCNT 314
           EIP+A+    Q  L    ++ +  ++    PT  +P    +++ L +HTPLE + +  N 
Sbjct: 78  EIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEP----LIDFLSKHTPLEHLYLHNNG 133

Query: 315 LIKQHGS 321
           L  Q G+
Sbjct: 134 LGPQAGA 140

  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.319    0.138    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,067,811
Number of Sequences: 13198
Number of extensions: 91318
Number of successful extensions: 171
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 166
Number of HSP's gapped (non-prelim): 14
length of query: 330
length of database: 2,899,336
effective HSP length: 89
effective length of query: 241
effective length of database: 1,724,714
effective search space: 415656074
effective search space used: 415656074
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)