BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645113|ref|NP_207283.1| hypothetical protein
[Helicobacter pylori 26695]
(528 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1K7Q|A Chain A, Prtc From Erwinia Chrysanthemi: E189a M... 30 0.66
pdb|1JGV|H Chain H, Structural Basis For Disfavored Elimina... 30 0.87
pdb|1JGU|H Chain H, Structural Basis For Disfavored Elimina... 30 0.87
pdb|1GO7|P Chain P, The Metzincin's Methionine: Prtc M226c-... 29 1.1
pdb|1JIW|P Chain P, Crystal Structure Of The Apr-Aprin Comp... 29 1.1
pdb|1K7G|A Chain A, Prtc From Erwinia Chrysanthemi 29 1.1
pdb|1KAP|P Chain P, Calcium Binding Protein Mol_id: 1; Mole... 29 1.1
pdb|1GO8|P Chain P, The Metzincin's Methionine: Prtc M226l ... 29 1.5
pdb|1K7I|A Chain A, Prtc From Erwinia Chrysanthemi: Y228f M... 28 3.3
pdb|1F2H|A Chain A, Solution Structure Of The N-Terminal Do... 26 9.6
pdb|1F3V|A Chain A, Crystal Structure Of The Complex Betwee... 26 9.6
pdb|1IKG|A Chain A, Michaelis Complex Of Streptomyces R61 D... 26 9.6
>pdb|1K7Q|A Chain A, Prtc From Erwinia Chrysanthemi: E189a Mutant
Length = 479
Score = 30.0 bits (66), Expect = 0.66
Identities = 23/75 (30%), Positives = 31/75 (40%), Gaps = 6/75 (8%)
Query: 46 FNHSPI-NPVKGIYPTETFVNLTGKLEGSVHLGRGWTVNLGGVLGGQAYDGTKYDRWAKD 104
+N S I NP Y +TF + G G H G N G G +Y+ Y +
Sbjct: 168 YNQSNIRNPGSEEYGRQTFTHAIGHALGLAHPGE---YNAGE--GDPSYNDAVYAEDSYQ 222
Query: 105 FTPPSYWDKTSCGTD 119
F+ SYW + G D
Sbjct: 223 FSIMSYWGENETGAD 237
>pdb|1JGV|H Chain H, Structural Basis For Disfavored Elimination Reaction In
Catalytic Antibody 1d4
Length = 218
Score = 29.6 bits (65), Expect = 0.87
Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 168 PGGSRRYQVYKANLTYDSDRVHMVMGRFDITEQEQMDWIYQLFQGFYGTFKLTKNMKFLL 227
PGGS + + T+ M F +T +++++W+ ++ GF + + +F +
Sbjct: 14 PGGSLQLSCAASGFTFSG----YAMSWFRLTPEKRLEWVASIYNGFRIHYLDSVKGRFTI 69
Query: 228 FSGWGRGI 235
S + R I
Sbjct: 70 SSDYARNI 77
>pdb|1JGU|H Chain H, Structural Basis For Disfavored Elimination Reaction In
Catalytic Antibody 1d4
Length = 217
Score = 29.6 bits (65), Expect = 0.87
Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 168 PGGSRRYQVYKANLTYDSDRVHMVMGRFDITEQEQMDWIYQLFQGFYGTFKLTKNMKFLL 227
PGGS + + T+ M F +T +++++W+ ++ GF + + +F +
Sbjct: 14 PGGSLQLSCAASGFTFSG----YAMSWFRLTPEKRLEWVASIYNGFRIHYLDSVKGRFTI 69
Query: 228 FSGWGRGI 235
S + R I
Sbjct: 70 SSDYARNI 77
>pdb|1GO7|P Chain P, The Metzincin's Methionine: Prtc M226c-E189k Double Mutant
Length = 462
Score = 29.3 bits (64), Expect = 1.1
Identities = 23/75 (30%), Positives = 31/75 (40%), Gaps = 6/75 (8%)
Query: 46 FNHSPI-NPVKGIYPTETFVNLTGKLEGSVHLGRGWTVNLGGVLGGQAYDGTKYDRWAKD 104
+N S I NP Y +TF + G G H G N G G +Y+ Y +
Sbjct: 151 YNQSNIRNPGSEEYGRQTFTHKIGHALGLAHPGE---YNAGE--GDPSYNDAVYAEDSYQ 205
Query: 105 FTPPSYWDKTSCGTD 119
F+ SYW + G D
Sbjct: 206 FSICSYWGENETGAD 220
>pdb|1JIW|P Chain P, Crystal Structure Of The Apr-Aprin Complex
pdb|1AKL| Alkaline Protease From Pseudomonas Aeruginosa Ifo3080
Length = 470
Score = 29.3 bits (64), Expect = 1.1
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Query: 51 INPVKGIYPTETFVNLTGKLEGSVHLGRGWTVNLGGVLGGQAYDGTKYDRWAKDFTPPSY 110
+NP G Y +T + G G H G N G G Y Y + ++ SY
Sbjct: 162 VNPANGNYGRQTLTHEIGHTLGLSHPG---DYNAGE--GDPTYADATYAEDTRAYSVMSY 216
Query: 111 WDKTSCGTD 119
W++ + G D
Sbjct: 217 WEEQNTGQD 225
>pdb|1K7G|A Chain A, Prtc From Erwinia Chrysanthemi
Length = 479
Score = 29.3 bits (64), Expect = 1.1
Identities = 23/75 (30%), Positives = 31/75 (40%), Gaps = 6/75 (8%)
Query: 46 FNHSPI-NPVKGIYPTETFVNLTGKLEGSVHLGRGWTVNLGGVLGGQAYDGTKYDRWAKD 104
+N S I NP Y +TF + G G H G N G G +Y+ Y +
Sbjct: 168 YNQSNIRNPGSEEYGRQTFTHEIGHALGLAHPGE---YNAGE--GDPSYNDAVYAEDSYQ 222
Query: 105 FTPPSYWDKTSCGTD 119
F+ SYW + G D
Sbjct: 223 FSIMSYWGENETGAD 237
>pdb|1KAP|P Chain P, Calcium Binding Protein Mol_id: 1; Molecule: Alkaline
Protease; Chain: P; Synonym: P. Aeruginosa Alkaline
Protease; Ec: 3.4.24.-; Mol_id: 2; Molecule:
Tetrapeptide (Gly Ser Asn Ser); Chain: I; Heterogen: Ca
2+; Heterogen: Zn 2+
Length = 479
Score = 29.3 bits (64), Expect = 1.1
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Query: 51 INPVKGIYPTETFVNLTGKLEGSVHLGRGWTVNLGGVLGGQAYDGTKYDRWAKDFTPPSY 110
+NP G Y +T + G G H G N G G Y Y + ++ SY
Sbjct: 171 VNPANGNYGRQTLTHEIGHTLGLSHPG---DYNAGE--GDPTYADATYAEDTRAYSVMSY 225
Query: 111 WDKTSCGTD 119
W++ + G D
Sbjct: 226 WEEQNTGQD 234
>pdb|1GO8|P Chain P, The Metzincin's Methionine: Prtc M226l Mutant
Length = 462
Score = 28.9 bits (63), Expect = 1.5
Identities = 23/75 (30%), Positives = 31/75 (40%), Gaps = 6/75 (8%)
Query: 46 FNHSPI-NPVKGIYPTETFVNLTGKLEGSVHLGRGWTVNLGGVLGGQAYDGTKYDRWAKD 104
+N S I NP Y +TF + G G H G N G G +Y+ Y +
Sbjct: 151 YNQSNIRNPGSEEYGRQTFTHEIGHALGLAHPGE---YNAGE--GDPSYNDAVYAEDSYQ 205
Query: 105 FTPPSYWDKTSCGTD 119
F+ SYW + G D
Sbjct: 206 FSILSYWGENETGAD 220
>pdb|1K7I|A Chain A, Prtc From Erwinia Chrysanthemi: Y228f Mutant
Length = 479
Score = 27.7 bits (60), Expect = 3.3
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 6/75 (8%)
Query: 46 FNHSPI-NPVKGIYPTETFVNLTGKLEGSVHLGRGWTVNLGGVLGGQAYDGTKYDRWAKD 104
+N S I NP Y +TF + G G H G N G G +Y+ Y +
Sbjct: 168 YNQSNIRNPGSEEYGRQTFTHEIGHALGLAHPGE---YNAGE--GDPSYNDAVYAEDSYQ 222
Query: 105 FTPPSYWDKTSCGTD 119
F+ S+W + G D
Sbjct: 223 FSIMSFWGENETGAD 237
>pdb|1F2H|A Chain A, Solution Structure Of The N-Terminal Domain Of The Tnfr1
Associated Protein, Tradd
Length = 169
Score = 26.2 bits (56), Expect = 9.6
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 386 DGIEQWVGSIYSLGFAGIDNITDADAF 412
+G E+WVGS Y + +D + +DA+
Sbjct: 6 NGHEEWVGSAYLFVESSLDKVVLSDAY 32
>pdb|1F3V|A Chain A, Crystal Structure Of The Complex Between The N-Terminal
Domain Of Tradd And The Traf Domain Of Traf2
Length = 179
Score = 26.2 bits (56), Expect = 9.6
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 386 DGIEQWVGSIYSLGFAGIDNITDADAF 412
+G E+WVGS Y + +D + +DA+
Sbjct: 6 NGHEEWVGSAYLFVESSLDKVVLSDAY 32
>pdb|1IKG|A Chain A, Michaelis Complex Of Streptomyces R61 Dd-Peptidase With A
Specific Peptidoglycan Substrate Fragment
pdb|1IKI|A Chain A, Complex Of Streptomyces R61 Dd-Peptidase With The Products
Of A Specific Peptidoglycan Substrate Fragment
pdb|3PTE| The Refined Crystallographic Structure Of A Dd-Peptidase
Penicillin-Target Enzyme At 1.6 A Resolution
pdb|1CEG| Cephalothin Complexed With Dd-Peptidase
pdb|1CEF| Dd CarboxypeptidaseTRANSPEPTIDASE COMPLEXED WITH CEFOTAXIME
pdb|1HVB|A Chain A, Crystal Structure Of Streptomyces R61 Dd-Peptidase
Complexed With A Novel Cephalosporin Analog Of Cell Wall
Peptidoglycan
Length = 349
Score = 26.2 bits (56), Expect = 9.6
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 385 VDGIEQWVGSIYSLGFAGIDNITDADAFTEYVKGGGKHGKFSWSVYQRFTTAPRALEYGI 444
VD EQ V S G A I + D D F + G + Q++TT YG+
Sbjct: 224 VDSTEQTVSWAQSAG-AVISSTQDLDTFFSALMSGQLMSAAQLAQMQQWTTVNSTQGYGL 282
Query: 445 GM 446
G+
Sbjct: 283 GL 284
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.321 0.141 0.460
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,875,534
Number of Sequences: 13198
Number of extensions: 201231
Number of successful extensions: 325
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 321
Number of HSP's gapped (non-prelim): 12
length of query: 528
length of database: 2,899,336
effective HSP length: 93
effective length of query: 435
effective length of database: 1,671,922
effective search space: 727286070
effective search space used: 727286070
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)