BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645114|ref|NP_207284.1| hypothetical protein
[Helicobacter pylori 26695]
(480 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1EUZ|E Chain E, Glutamate Dehydrogenase From Thermococc... 29 1.3
pdb|1I6H|B Chain B, Rna Polymerase Ii Elongation Complex >g... 27 3.9
pdb|2MCG|1 Chain 1, Immunoglobulin Lambda Light Chain Dimer... 27 5.0
pdb|1MCO|L Chain L, Immunoglobulin G1 (Igg1) (Mcg) With A H... 27 5.0
pdb|1MCS|A Chain A, Immunoglobulin Lambda Light Chain Dimer... 27 5.0
pdb|1D9X|A Chain A, Crystal Structure Of The Dna Repair Pro... 27 6.6
pdb|1I78|A Chain A, Crystal Structure Of Outer Membrane Pro... 27 6.6
pdb|1D9Z|A Chain A, Crystal Structure Of The Dna Repair Pro... 27 6.6
pdb|1QUB|A Chain A, Crystal Structure Of The Glycosylated F... 26 8.6
pdb|1B25|A Chain A, Formaldehyde Ferredoxin Oxidoreductase ... 26 8.6
pdb|1C1Z|A Chain A, Crystal Structure Of Human Beta-2-Glyco... 26 8.6
>pdb|1EUZ|E Chain E, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|A Chain A, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|C Chain C, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|D Chain D, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|F Chain F, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|B Chain B, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
Length = 419
Score = 28.9 bits (63), Expect = 1.3
Identities = 15/51 (29%), Positives = 24/51 (46%)
Query: 390 WKILGRWTDSPRADERSLALFLSYFSNKYNIRMDLKLEYYGNITKKGYCIG 440
+ ++G WTD P D + + + ++Y M K +G IT K IG
Sbjct: 132 YDVIGPWTDIPAPDVYTNPKIMGWMMDEYETIMRRKGPAFGVITGKPLSIG 182
>pdb|1I6H|B Chain B, Rna Polymerase Ii Elongation Complex
pdb|1I50|B Chain B, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
pdb|1I3Q|B Chain B, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
pdb|1K83|B Chain B, Crystal Structure Of Yeast Rna Polymerase Ii Complexed
With The Inhibitor Alpha Amanitin
Length = 1224
Score = 27.3 bits (59), Expect = 3.9
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 13/61 (21%)
Query: 143 GHSGLQVQKPRLAMVHNAFLSYNYKKDKFSFGVKGGRYDAEEYDWFTSYTQGVEGFVKYK 202
GH L+V+K +A + ++ Y+ ++GG D EEY W + EG V+Y
Sbjct: 647 GHKELKVRKGHIAKL----MATEYQD------IEGGFEDVEEYTWSSLLN---EGLVEYI 693
Query: 203 D 203
D
Sbjct: 694 D 694
>pdb|2MCG|1 Chain 1, Immunoglobulin Lambda Light Chain Dimer (MCG) (Trigonal
Form)
pdb|2MCG|2 Chain 2, Immunoglobulin Lambda Light Chain Dimer (MCG) (Trigonal
Form)
pdb|3MCG|1 Chain 1, Immunoglobulin Lambda Light Chain Dimer (MCG)
(Orthorhombic Form)
pdb|3MCG|2 Chain 2, Immunoglobulin Lambda Light Chain Dimer (MCG)
(Orthorhombic Form)
pdb|1A8J|H Chain H, Immunoglobulin Lambda Light Chain Dimer (Mcg) Complex With
Aspartame
pdb|1A8J|L Chain L, Immunoglobulin Lambda Light Chain Dimer (Mcg) Complex With
Aspartame
pdb|1MCW|M Chain M, Immunoglobulin Heterologous Light Chain Dimer (MCG-WEIR
Hybrid)
Length = 216
Score = 26.9 bits (58), Expect = 5.0
Identities = 24/112 (21%), Positives = 45/112 (39%), Gaps = 16/112 (14%)
Query: 106 PYDSTAYQGNNIPNGQPGSRTDPFGAGIFWQYIGWYAGHSGLQVQKPRLAMVHNAFLSYN 165
P ++ G ++ G+ +D G + Y+ WY H+G K +++ +
Sbjct: 7 PPSASGSLGQSVTISCTGTSSDVGG----YNYVSWYQQHAG----KAPKVIIYEVNKRPS 58
Query: 166 YKKDKFSFGVKG--------GRYDAEEYDWFTSYTQGVEGFVKYKDTRFRVM 209
D+FS G G +E D++ S +G + FV T+ V+
Sbjct: 59 GVPDRFSGSKSGNTASLTVSGLQAEDEADYYCSSYEGSDNFVFGTGTKVTVL 110
>pdb|1MCO|L Chain L, Immunoglobulin G1 (Igg1) (Mcg) With A Hinge Deletion
Length = 216
Score = 26.9 bits (58), Expect = 5.0
Identities = 24/112 (21%), Positives = 45/112 (39%), Gaps = 16/112 (14%)
Query: 106 PYDSTAYQGNNIPNGQPGSRTDPFGAGIFWQYIGWYAGHSGLQVQKPRLAMVHNAFLSYN 165
P ++ G ++ G+ +D G + Y+ WY H+G K +++ +
Sbjct: 7 PPSASGSLGQSVTISCTGTSSDVGG----YNYVSWYQQHAG----KAPKVIIYEVNKRPS 58
Query: 166 YKKDKFSFGVKG--------GRYDAEEYDWFTSYTQGVEGFVKYKDTRFRVM 209
D+FS G G +E D++ S +G + FV T+ V+
Sbjct: 59 GVPDRFSGSKSGNTASLTVSGLQAEDEADYYCSSYEGSDNFVFGTGTKVTVL 110
>pdb|1MCS|A Chain A, Immunoglobulin Lambda Light Chain Dimer (Mcg) Complex With
N-Acetyl-L-Gln-D-Phe-L-His-D-Pro-Oh
pdb|1MCS|B Chain B, Immunoglobulin Lambda Light Chain Dimer (Mcg) Complex With
N-Acetyl-L-Gln-D-Phe-L-His-D-Pro-Oh
pdb|1MCB|A Chain A, Immunoglobulin Lambda Light Chain Dimer (Mcg) Complex With
N-Acetyl-L-Gln-D-Phe-L-His-D-Pro-Oh
pdb|1MCB|B Chain B, Immunoglobulin Lambda Light Chain Dimer (Mcg) Complex With
N-Acetyl-L-Gln-D-Phe-L-His-D-Pro-Oh
pdb|1MCC|A Chain A, Immunoglobulin Lambda Light Chain Dimer (Mcg) Complex With
N-Acetyl-L-Gln-D-Phe-L-His-D-Pro-Nh2
pdb|1MCC|B Chain B, Immunoglobulin Lambda Light Chain Dimer (Mcg) Complex With
N-Acetyl-L-Gln-D-Phe-L-His-D-Pro-Nh2
pdb|1MCD|A Chain A, Immunoglobulin Lambda Light Chain Dimer (Mcg) Complex With
N-Acetyl-D-Phe-B-Ala-L-His-D-Pro-Nh2
pdb|1MCD|B Chain B, Immunoglobulin Lambda Light Chain Dimer (Mcg) Complex With
N-Acetyl-D-Phe-B-Ala-L-His-D-Pro-Nh2
pdb|1MCE|A Chain A, Immunoglobulin Lambda Light Chain Dimer (Mcg) Complex With
N-Acetyl-L-Gln-D-Phe-L-His-D-Pro-B-Ala-Oh
pdb|1MCE|B Chain B, Immunoglobulin Lambda Light Chain Dimer (Mcg) Complex With
N-Acetyl-L-Gln-D-Phe-L-His-D-Pro-B-Ala-Oh
pdb|1MCF|A Chain A, Immunoglobulin Lambda Light Chain Dimer (Mcg) Complex With
N-Acetyl-L-Gln-D-Phe-L-His-D-Pro-B-Ala-B-Ala-Oh
pdb|1MCF|B Chain B, Immunoglobulin Lambda Light Chain Dimer (Mcg) Complex With
N-Acetyl-L-Gln-D-Phe-L-His-D-Pro-B-Ala-B-Ala-Oh
pdb|1MCH|A Chain A, Immunoglobulin Lambda Light Chain Dimer (Mcg) Complex With
N-Acetyl-L-Gln-D-Phe-L-His-D-Pro-B-Ala-B-Ala-Oh
pdb|1MCH|B Chain B, Immunoglobulin Lambda Light Chain Dimer (Mcg) Complex With
N-Acetyl-L-Gln-D-Phe-L-His-D-Pro-B-Ala-B-Ala-Oh
pdb|1MCI|A Chain A, Immunoglobulin Lambda Light Chain Dimer (Mcg) Complex With
N-Acetyl-D-Phe-L-His-D-Pro-Oh
pdb|1MCI|B Chain B, Immunoglobulin Lambda Light Chain Dimer (Mcg) Complex With
N-Acetyl-D-Phe-L-His-D-Pro-Oh
pdb|1MCJ|A Chain A, Immunoglobulin Lambda Light Chain Dimer (Mcg) Complex With
N-Acetyl-D-Phe-L-His-D-Pro-Nh2
pdb|1MCJ|B Chain B, Immunoglobulin Lambda Light Chain Dimer (Mcg) Complex With
N-Acetyl-D-Phe-L-His-D-Pro-Nh2
pdb|1MCK|A Chain A, Immunoglobulin Lambda Light Chain Dimer (Mcg) Complexed
With N-Acetyl-D-Glu-L-His-D-Pro-Nh2
pdb|1MCK|B Chain B, Immunoglobulin Lambda Light Chain Dimer (Mcg) Complexed
With N-Acetyl-D-Glu-L-His-D-Pro-Nh2
pdb|1MCL|A Chain A, Immunoglobulin Lambda Light Chain Dimer (Mcg) Complex With
N-Acetyl-D-His-L-Pro-Oh
pdb|1MCL|B Chain B, Immunoglobulin Lambda Light Chain Dimer (Mcg) Complex With
N-Acetyl-D-His-L-Pro-Oh
pdb|1MCN|A Chain A, Immunoglobulin Lambda Light Chain Dimer (Mcg) Complex With
N-Acetyl-D-His-L-Pro-Nh2
pdb|1MCN|B Chain B, Immunoglobulin Lambda Light Chain Dimer (Mcg) Complex With
N-Acetyl-D-His-L-Pro-Nh2
pdb|1MCQ|A Chain A, Immunoglobulin Lambda Light Chain Dimer (Mcg) Complex With
N-Acetyl-L-His-D-Pro-Nh2
pdb|1MCQ|B Chain B, Immunoglobulin Lambda Light Chain Dimer (Mcg) Complex With
N-Acetyl-L-His-D-Pro-Nh2
pdb|1MCR|A Chain A, Immunoglobulin Lambda Light Chain Dimer (Mcg) Complex With
N-Acetyl-L-His-D-Pro-Oh
pdb|1MCR|B Chain B, Immunoglobulin Lambda Light Chain Dimer (Mcg) Complex With
N-Acetyl-L-His-D-Pro-Oh
Length = 216
Score = 26.9 bits (58), Expect = 5.0
Identities = 24/112 (21%), Positives = 45/112 (39%), Gaps = 16/112 (14%)
Query: 106 PYDSTAYQGNNIPNGQPGSRTDPFGAGIFWQYIGWYAGHSGLQVQKPRLAMVHNAFLSYN 165
P ++ G ++ G+ +D G + Y+ WY H+G K +++ +
Sbjct: 7 PPSASGSLGQSVTISCTGTSSDVGG----YNYVSWYQQHAG----KAPKVIIYEVNKRPS 58
Query: 166 YKKDKFSFGVKG--------GRYDAEEYDWFTSYTQGVEGFVKYKDTRFRVM 209
D+FS G G +E D++ S +G + FV T+ V+
Sbjct: 59 GVPDRFSGSKSGNTASLTVSGLQAEDEADYYCSSYEGSDNFVFGTGTKVTVL 110
>pdb|1D9X|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb
Length = 658
Score = 26.6 bits (57), Expect = 6.6
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 148 QVQKPRLAMVHNAFLSYN-YKKDKFSFGVKGGRYDAEEYDWF--TSYTQGVEGFVKYKDT 204
QV KP L + HN L+ Y + K F Y YD++ +Y + +++ KD
Sbjct: 55 QVNKPTLVIAHNKTLAGQLYSELKEFFPHNAVEYFVSYYDYYQPEAYVPQTDTYIE-KDA 113
Query: 205 RFRVMYSDARASASSDWF 222
+ R SA+S F
Sbjct: 114 KINDEIDKLRHSATSALF 131
>pdb|1I78|A Chain A, Crystal Structure Of Outer Membrane Protease Ompt From
Escherichia Coli
pdb|1I78|B Chain B, Crystal Structure Of Outer Membrane Protease Ompt From
Escherichia Coli
Length = 297
Score = 26.6 bits (57), Expect = 6.6
Identities = 30/117 (25%), Positives = 48/117 (40%), Gaps = 6/117 (5%)
Query: 162 LSYNYKKDKFSFGVKGGR--YDAEE--YDWFTSYTQGVEGFVKYKDTRFRVMYSDARASA 217
L Y++ ++SF +GG Y +EE D S+ G E + YK RF++ Y S
Sbjct: 130 LMAGYQESRYSFTARGGSYIYSSEEGFRDDIGSFPNG-ERAIGYKQ-RFKMPYIGLTGSY 187
Query: 218 SSDWFWYFGRYYTSGKALMVADLKYEKDNLKINPYFYAIFQRMYAPGINITYDTNPN 274
+ F G + SG + ++ +I Q Y+ +N Y PN
Sbjct: 188 RYEDFELGGTFKYSGWVESSDNDEHYDPKGRITYRSKVKDQNYYSVAVNAGYYVTPN 244
>pdb|1D9Z|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb In
Complex With Atp
Length = 657
Score = 26.6 bits (57), Expect = 6.6
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 148 QVQKPRLAMVHNAFLSYN-YKKDKFSFGVKGGRYDAEEYDWF--TSYTQGVEGFVKYKDT 204
QV KP L + HN L+ Y + K F Y YD++ +Y + +++ KD
Sbjct: 55 QVNKPTLVIAHNKTLAGQLYSELKEFFPHNAVEYFVSYYDYYQPEAYVPQTDTYIE-KDA 113
Query: 205 RFRVMYSDARASASSDWF 222
+ R SA+S F
Sbjct: 114 KINDEIDKLRHSATSALF 131
>pdb|1QUB|A Chain A, Crystal Structure Of The Glycosylated Five-Domain Human
Beta2-Glycoprotein I Purified From Blood Plasma
Length = 319
Score = 26.2 bits (56), Expect = 8.6
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 261 YAPGINITYDTNPNFNNKG--FRFVGTFVGFFPI 292
Y PG ITY P + ++G +F+ G +PI
Sbjct: 22 YEPGEEITYSCKPGYVSRGGMRKFICPLTGLWPI 55
>pdb|1B25|A Chain A, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus
pdb|1B25|B Chain B, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus
pdb|1B25|C Chain C, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus
pdb|1B25|D Chain D, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus
pdb|1B4N|A Chain A, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus, Complexed With Glutarate
pdb|1B4N|B Chain B, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus, Complexed With Glutarate
pdb|1B4N|C Chain C, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus, Complexed With Glutarate
pdb|1B4N|D Chain D, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus, Complexed With Glutarate
Length = 619
Score = 26.2 bits (56), Expect = 8.6
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 396 WTDSPRADERSLALFLSYFSNKYNIRMDLKLEY 428
W D +A +R +L +Y+ ++N + D K++Y
Sbjct: 519 WDDLYKAADRVYSLIRAYWVREFNGKWDRKMDY 551
>pdb|1C1Z|A Chain A, Crystal Structure Of Human Beta-2-Glycoprotein-I
(Apolipoprotein-H)
Length = 326
Score = 26.2 bits (56), Expect = 8.6
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 261 YAPGINITYDTNPNFNNKG--FRFVGTFVGFFPI 292
Y PG ITY P + ++G +F+ G +PI
Sbjct: 22 YEPGEEITYSCKPGYVSRGGMRKFICPLTGLWPI 55
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.324 0.142 0.449
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,261,827
Number of Sequences: 13198
Number of extensions: 157897
Number of successful extensions: 464
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 462
Number of HSP's gapped (non-prelim): 11
length of query: 480
length of database: 2,899,336
effective HSP length: 92
effective length of query: 388
effective length of database: 1,685,120
effective search space: 653826560
effective search space used: 653826560
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)