BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645116|ref|NP_207286.1| hypothetical protein
[Helicobacter pylori 26695]
(295 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1I1E|A Chain A, Crystal Structure Of Clostridium Botuli... 36 0.005
pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyos... 33 0.039
pdb|1G8X|A Chain A, Structure Of A Genetically Engineered M... 27 2.8
pdb|1DEQ|B Chain B, The Crystal Structure Of Modified Bovin... 27 3.6
pdb|1NFO| Apolipoprotein E2 (Apoe2, D154a Mutation) 26 4.7
pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Ch... 26 6.2
pdb|2PHL|C Chain C, Phaseolin >gi|640273|pdb|2PHL|A Chain A... 26 6.2
pdb|1QOY|A Chain A, E.Coli Hemolysin E (Hlye, Clya, Shea) 26 6.2
>pdb|1I1E|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With Doxorubicin
pdb|1EPW|A Chain A, Crystal Structure Of Clostridium Neurotoxin Type B
pdb|1F31|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With A Trisaccharide
Length = 1290
Score = 36.2 bits (82), Expect = 0.005
Identities = 45/199 (22%), Positives = 74/199 (36%), Gaps = 27/199 (13%)
Query: 118 LNANTENIKSEIKKLENQLIETTTRLLTSYQIFLNNARDSANNQITANKTESLEALNQAK 177
L + +N IK ++N L + + Y + + + N Q K +ALN
Sbjct: 667 LESYIDNKNKIIKTIDNALTKRNEKWSDMYGLIVAQWLSTVNTQFYTIKEGMYKALNYQA 726
Query: 178 TSANNEITANQT----QALTNINEAKENANNQITENKTQAITNINE-------------- 219
+ I + +NIN + N+++ E QAI NIN
Sbjct: 727 QALEEIIKYRYNIYSEKEKSNINIDFNDINSKLNEGINQAIDNINNFINGCSVSYLMKKM 786
Query: 220 ---ARESATTQITTNKQEVLNSITQEKNQATSEITEAKKSAFNELLETLKPKFSGLFAGA 276
A E T K+ +LN I + K E +KS N+ L+T+ P F +
Sbjct: 787 IPLAVEKLLDFDNTLKKNLLNYIDENKLYLIGS-AEYEKSKVNKYLKTIMP-----FDLS 840
Query: 277 YYIRNVIIFKADGRRKSRI 295
Y + I+ + + S I
Sbjct: 841 IYTNDTILIEMFNKYNSEI 859
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 33.1 bits (74), Expect = 0.039
Identities = 44/214 (20%), Positives = 79/214 (36%), Gaps = 23/214 (10%)
Query: 72 DSSLRNSIEWLNNAGESLKTKMKEYEGFFSDFNTSMRTNEQEVSATLNANTENIKSEIKK 131
D L+ + E A LK +++ + N + E A ++ KK
Sbjct: 863 DEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKK 922
Query: 132 --LENQLIETTTRLLTSYQIFLNNARDSANNQITANKTESLEALNQAKTSANNEITANQT 189
LE L E R+ + + Q+ A K + + + + E A Q
Sbjct: 923 QELEEILHEMEARI---------EEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQK 973
Query: 190 QALTNINE----AKENANNQITENKTQAITNINEARESATTQITTN---KQEVLNSITQE 242
L + K + I E++ +T + E + +TTN ++E ++T+
Sbjct: 974 LQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKL 1033
Query: 243 KNQATSEITE-----AKKSAFNELLETLKPKFSG 271
KN+ S I+E K+ + LE +K K G
Sbjct: 1034 KNKHESMISELEVRLKKEEKSRQELEKIKRKLEG 1067
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor
pdb|1G8X|B Chain B, Structure Of A Genetically Engineered Molecular Motor
Length = 1010
Score = 26.9 bits (58), Expect = 2.8
Identities = 30/180 (16%), Positives = 68/180 (37%), Gaps = 28/180 (15%)
Query: 59 LLSLDFFKNANEIDSSLRNSIEWLNNAGESLKTKMKEYEGFFSDFNTSMRTNEQE----- 113
L S DF + + S + E+ ++ E E ++ T +R ++E
Sbjct: 789 LESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAP 848
Query: 114 -------VSATLNA-------NTENIKSEIKKLE---------NQLIETTTRLLTSYQIF 150
+ +T +A + E ++ E+K+ + N++++ T+ ++
Sbjct: 849 AGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVY 908
Query: 151 LNNARDSANNQITANKTESLEALNQAKTSANNEITANQTQALTNINEAKENANNQITENK 210
L + + K ++LEA + S + ++ L + E N ++TE K
Sbjct: 909 LGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERK 968
>pdb|1DEQ|B Chain B, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|E Chain E, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|O Chain O, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|R Chain R, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
Length = 408
Score = 26.6 bits (57), Expect = 3.6
Identities = 18/85 (21%), Positives = 41/85 (48%), Gaps = 17/85 (20%)
Query: 69 NEIDSSLRNS------IEWLNNAGESLKTKMKEYEGFFSDFNTSMRTNEQEVSATLNANT 122
N +DS R S I L N + + ++++ E +++++ + ++ + T+ N
Sbjct: 49 NTVDSVSRTSSSTFQYITLLKNMWKGRQNQVQDNENVVNEYSSHLEKHQLYIDETVKNNI 108
Query: 123 -----------ENIKSEIKKLENQL 136
EN++S+I+KLE+ +
Sbjct: 109 PTKLRVLRSILENLRSKIQKLESDV 133
>pdb|1NFO| Apolipoprotein E2 (Apoe2, D154a Mutation)
Length = 191
Score = 26.2 bits (56), Expect = 4.7
Identities = 15/56 (26%), Positives = 27/56 (47%), Gaps = 4/56 (7%)
Query: 113 EVSATLNANTENIK----SEIKKLENQLIETTTRLLTSYQIFLNNARDSANNQITA 164
EV A L +TE ++ S ++KL +L+ L ++ AR+ A ++A
Sbjct: 121 EVQAMLGQSTEELRVRLASHLRKLRKRLLRDADALQKCLAVYQAGAREGAERGLSA 176
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
Length = 758
Score = 25.8 bits (55), Expect = 6.2
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 192 LTNINEAKENANNQITENKTQAITNINEARESATTQITT-NKQEVLNSITQEKNQATSEI 250
L +++ K+ N E+ I I E S + + T N + L + +++A +
Sbjct: 411 LMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEAL 470
Query: 251 TEAKKSAFNELLETLKPKFSGLFAG 275
TEA K A L KP S LFAG
Sbjct: 471 TEAIKMARAGLGHEHKPVGSFLFAG 495
>pdb|2PHL|C Chain C, Phaseolin
pdb|2PHL|A Chain A, Phaseolin
pdb|2PHL|B Chain B, Phaseolin
pdb|1PHS| Phaseolin
Length = 397
Score = 25.8 bits (55), Expect = 6.2
Identities = 21/97 (21%), Positives = 44/97 (44%), Gaps = 8/97 (8%)
Query: 194 NINEAKENANNQITENKTQ---AITNINEARESATTQITTNKQEVLNSITQEKNQATSE- 249
+ N E N + E + Q I NI+ + ++ K S++++ N +E
Sbjct: 169 SFNSKFEEINRVLFEEEGQQEGVIVNIDSEQIKELSKHA--KSSSRKSLSKQDNTIGNEF 226
Query: 250 --ITEAKKSAFNELLETLKPKFSGLFAGAYYIRNVII 284
+TE ++ N L+ +++ + LF YY + ++I
Sbjct: 227 GNLTERTDNSLNVLISSIEMEEGALFVPHYYSKAIVI 263
>pdb|1QOY|A Chain A, E.Coli Hemolysin E (Hlye, Clya, Shea)
Length = 318
Score = 25.8 bits (55), Expect = 6.2
Identities = 22/76 (28%), Positives = 34/76 (43%), Gaps = 6/76 (7%)
Query: 89 LKTKMKEYEGFFSDF-NTSMRTNEQEVSATLNANTENIKSEIKKLENQLIETTTRLLTSY 147
LK K+K + FF+ NT + N+ +A L TE K E + TTR Y
Sbjct: 226 LKNKLKSVQNFFTTLSNTVKQANKDIDAAKLKLTTEIAAIGEIKTETE----TTRFYVDY 281
Query: 148 -QIFLNNARDSANNQI 162
+ L+ +++A I
Sbjct: 282 DDLMLSLLKEAAKKMI 297
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.306 0.122 0.307
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,310,898
Number of Sequences: 13198
Number of extensions: 45027
Number of successful extensions: 103
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 102
Number of HSP's gapped (non-prelim): 8
length of query: 295
length of database: 2,899,336
effective HSP length: 88
effective length of query: 207
effective length of database: 1,737,912
effective search space: 359747784
effective search space used: 359747784
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 54 (25.4 bits)