BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645122|ref|NP_207292.1| hypothetical protein
[Helicobacter pylori 26695]
         (86 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1NMT|A  Chain A, N-Myristoyl Transferase From Candida Al...    23  4.3
pdb|1L8D|A  Chain A, Rad50 Coiled-Coil Zn Hook >gi|23200318|...    22  9.5

>pdb|1NMT|A Chain A, N-Myristoyl Transferase From Candida Albicans At 2.45 A
 pdb|1NMT|B Chain B, N-Myristoyl Transferase From Candida Albicans At 2.45 A
 pdb|1NMT|C Chain C, N-Myristoyl Transferase From Candida Albicans At 2.45 A
          Length = 392

 Score = 23.5 bits (49), Expect = 4.3
 Identities = 11/22 (50%), Positives = 13/22 (59%)

Query: 22  MTTKDTSTLKELLETYQRPFKL 43
           MT KD ST+  LL  YQ  F +
Sbjct: 211 MTGKDVSTVLSLLYKYQERFDI 232



>pdb|1L8D|A Chain A, Rad50 Coiled-Coil Zn Hook
 pdb|1L8D|B Chain B, Rad50 Coiled-Coil Zn Hook
          Length = 112

 Score = 22.3 bits (46), Expect = 9.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 66 ESERNEIFQKISQLDKVVQTL 86
          E ERNEI Q+I +L   +  L
Sbjct: 16 EEERNEITQRIGELKNKIGDL 36



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.315    0.129    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 416,942
Number of Sequences: 13198
Number of extensions: 12482
Number of successful extensions: 15
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 2
length of query: 86
length of database: 2,899,336
effective HSP length: 62
effective length of query: 24
effective length of database: 2,081,060
effective search space: 49945440
effective search space used: 49945440
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)