BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645128|ref|NP_207298.1| DNA gyrase, sub B (gyrB)
[Helicobacter pylori 26695]
(773 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1EI1|A Chain A, Dimerization Of E. Coli Dna Gyrase B Pr... 347 4e-96
pdb|1KIJ|A Chain A, Crystal Structure Of The 43k Atpase Dom... 318 2e-87
pdb|1AJ6| Novobiocin-Resistant Mutant (R136h) Of The N-Te... 237 4e-63
pdb|1KZN|A Chain A, Crystal Structure Of E. Coli 24kda Doma... 224 4e-59
pdb|1BJT| Topoisomerase Ii Residues 409 - 1201 >gi|163327... 67 1e-11
pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma ... 33 0.16
pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of... 33 0.16
pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of... 32 0.20
pdb|1HW5|A Chain A, The CapCRP VARIANT T127LS128A >gi|13096... 31 0.59
pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Confor... 30 1.0
pdb|1L2O|A Chain A, Scallop Myosin S1-Adp-P-Pdm In The Acti... 30 1.0
pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:... 30 1.0
pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near ... 30 1.0
pdb|1IW7|D Chain D, Crystal Structure Of The Rna Polymerase... 30 1.0
pdb|1DB9|A Chain A, Protein-Dna Recognition And Dna Deforma... 29 1.7
pdb|1G6N|B Chain B, 2.1 Angstrom Structure Of Cap-Camp >gi|... 29 1.7
pdb|1DB7|A Chain A, Protein-Dna Recognition And Dna Deforma... 29 1.7
pdb|1LB2|A Chain A, Structure Of The E. Coli Alpha C-Termin... 29 1.7
pdb|1CGP|A Chain A, Catabolite Gene Activator Protein Compl... 29 1.7
pdb|1PFR|A Chain A, Ribonucleoside-Diphosphate Reductase 1 ... 29 2.2
pdb|2TMA|A Chain A, Tropomyosin >gi|230768|pdb|2TMA|B Chain... 28 2.9
pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 A... 28 2.9
pdb|1LDJ|A Chain A, Structure Of The Cul1-Rbx1-Skp1-F Boxsk... 28 2.9
pdb|1RUO|B Chain B, Cap-Dna Recognition: Interactions Invol... 28 2.9
pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) >gi|249878... 28 3.8
pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpas... 28 5.0
pdb|2AV8|A Chain A, Y122f Mutant Of Ribonucleotide Reductas... 28 5.0
pdb|1QMV|A Chain A, Thioredoxin Peroxidase B From Red Blood... 28 5.0
pdb|1AV8|A Chain A, Ribonucleotide Reductase R2 Subunit Fro... 28 5.0
pdb|1RNR|A Chain A, Protein R2 Of Ribonucleotide Reductase ... 28 5.0
pdb|1RIB|A Chain A, Protein R2 Of Ribonucleotide Reductase ... 28 5.0
pdb|1JQC|B Chain B, Mn Substituted Ribonucleotide Reductase... 28 5.0
pdb|1LDK|A Chain A, Structure Of The Cul1-Rbx1-Skp1-F Boxsk... 28 5.0
pdb|3DNI| Deoxyribonuclease I (Dnase I) (E.C.3.1.21.1) >g... 27 6.5
pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c >g... 27 8.5
>pdb|1EI1|A Chain A, Dimerization Of E. Coli Dna Gyrase B Provides A Structural
Mechanism For Activating The Atpase Catalytic Center
pdb|1EI1|B Chain B, Dimerization Of E. Coli Dna Gyrase B Provides A Structural
Mechanism For Activating The Atpase Catalytic Center
Length = 391
Score = 347 bits (889), Expect = 4e-96
Identities = 182/391 (46%), Positives = 271/391 (68%), Gaps = 11/391 (2%)
Query: 6 SHSIKVLKGLEGVRKRPGMYIGDTNVG-GLHHMVYEVVDNAVDESMAGFCDTINITLTDE 64
S SIKVLKGL+ VRKRPGMYIGDT+ G GLHHMV+EVVDNA+DE++AG C I +T+ +
Sbjct: 6 SSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHAD 65
Query: 65 GSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSVVNAL 124
S V+D+GRGIP IHP E + A V++T+LHAGGKFD+++YKVSGGLHGVGVSVVNAL
Sbjct: 66 NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNAL 125
Query: 125 SKRLIMTIKKEGQIYRQEFEKGIPTSELEIIGKTKSAKESGTTIEFFPD-ESVMEVVEFQ 183
S++L + I++EG+I+RQ +E G+P + L + G+T +++GT + F+P E+ V EF+
Sbjct: 126 SQKLELVIQREGKIHRQIYEHGVPQAPLAVTGET---EKTGTMVRFWPSLETFTNVTEFE 182
Query: 184 AGILQKRFKEMAYLNDGLKISFKEEKTQLQETYFYEDGLKQFVKDSAKKELLTPIIS--F 241
IL KR +E+++L+ G+ I ++++ ++ + YE G+K FV+ K + TPI F
Sbjct: 183 YEILAKRLRELSFLDSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNK--TPIHPNIF 240
Query: 242 KSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYIGNNI 301
E+ +EVAL + D + EN F NNI +GGTH AGF+ +++ + Y+
Sbjct: 241 YFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEG 300
Query: 302 KTKESR--PISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIHQFL 359
+K+++ +D +EGLIAVVS+K+ +P F QTK KL SS ++ V + + + + ++L
Sbjct: 301 YSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYL 360
Query: 360 EENPNEAKIIANKALLAAKAREASKKARELT 390
ENP +AKI+ K + AA+AREA+++ARE+T
Sbjct: 361 LENPTDAKIVVGKIIDAARAREAARRAREMT 391
>pdb|1KIJ|A Chain A, Crystal Structure Of The 43k Atpase Domain Of Thermus
Thermophilus Gyrase B In Complex With Novobiocin
pdb|1KIJ|B Chain B, Crystal Structure Of The 43k Atpase Domain Of Thermus
Thermophilus Gyrase B In Complex With Novobiocin
Length = 390
Score = 318 bits (814), Expect = 2e-87
Identities = 173/390 (44%), Positives = 241/390 (61%), Gaps = 5/390 (1%)
Query: 3 NYQSHSIKVLKGLEGVRKRPGMYIGDTNVGGLHHMVYEVVDNAVDESMAGFCDTINITLT 62
+Y + +I+VLKGLEGVR RP MYIG T V G HH+ E++DNAVDE++AG+ I + L
Sbjct: 2 SYDASAIRVLKGLEGVRHRPAMYIGGTGVEGYHHLFKEILDNAVDEALAGYATEILVRLN 61
Query: 63 DEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSVVN 122
++GS VEDNGRGIPVD+ P E PA V+ LH+GGKF+ YKVSGGLHGVG SVVN
Sbjct: 62 EDGSLTVEDNGRGIPVDLMPEEGKPAVEVIYNTLHSGGKFEQGAYKVSGGLHGVGASVVN 121
Query: 123 ALSKRLIMTIKKEGQIYRQEFEKGIPTSELEIIGKTKSAKESGTTIEFFPDESVMEVVEF 182
ALS+ ++ + +EG+ +R F +G T L ++G+ K +GT + F PD + + F
Sbjct: 122 ALSEWTVVEVFREGKHHRIAFSRGEVTEPLRVVGEAPRGK-TGTRVTFKPDPEIFGNLRF 180
Query: 183 QAGILQKRFKEMAYLNDGLKISFKEEKTQLQETYFYEDGLKQFVKDSAKKELLTPIISFK 242
++ R +E+AYL GLK+ F++ + +E + + G+ F K A+ E L F
Sbjct: 181 DPSKIRARLREVAYLVAGLKLVFQDRQHGKEEVFLDKGGVASFAKALAEGEDLLYEKPFL 240
Query: 243 SMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQY---IGN 299
+EV + YN L++ N I T +GGTH FK S+A+ QY G
Sbjct: 241 IRGTHGEVEVEVGFLHTQGYNAEILTYANMIPTRDGGTHLTAFKSAYSRALNQYAKKAGL 300
Query: 300 NIKTKESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIHQFL 359
N K K +P +D+ EGL AVVS+K+ P FEGQTK KL + A V ++VY+++ + L
Sbjct: 301 N-KEKGPQPTGDDLLEGLYAVVSVKLPNPQFEGQTKGKLLNPEAGTAVGQVVYERLLEIL 359
Query: 360 EENPNEAKIIANKALLAAKAREASKKAREL 389
EENP AK + KAL AA+AREA++KAREL
Sbjct: 360 EENPRIAKAVYEKALRAAQAREAARKAREL 389
>pdb|1AJ6| Novobiocin-Resistant Mutant (R136h) Of The N-Terminal 24 Kda
Fragment Of Dna Gyrase B Complexed With Novobiocin At
2.3 Angstroms Resolution
Length = 219
Score = 237 bits (604), Expect = 4e-63
Identities = 116/219 (52%), Positives = 165/219 (74%), Gaps = 5/219 (2%)
Query: 3 NYQSHSIKVLKGLEGVRKRPGMYIGDTNVG-GLHHMVYEVVDNAVDESMAGFCDTINITL 61
+Y S SIKVLKGL+ VRKRPGMYIGDT+ G GLHHMV+EVVDNA+DE++AG C I +T+
Sbjct: 3 SYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTI 62
Query: 62 TDEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSVV 121
+ S V+D+GRGIP IHP E + A V++T+LHAGGKFD+++YKVSGGLHGVGVSVV
Sbjct: 63 HADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVV 122
Query: 122 NALSKRLIMTIKKEGQIYRQEFEKGIPTSELEIIGKTKSAKESGTTIEFFPD-ESVMEVV 180
NALS++L + I+ EG+I+RQ +E G+P + L + G+T +++GT + F+P E+ V
Sbjct: 123 NALSQKLELVIQHEGKIHRQIYEHGVPQAPLAVTGET---EKTGTMVRFWPSLETFTNVT 179
Query: 181 EFQAGILQKRFKEMAYLNDGLKISFKEEKTQLQETYFYE 219
EF+ IL KR +E+++LN G+ I ++++ ++ + YE
Sbjct: 180 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYE 218
>pdb|1KZN|A Chain A, Crystal Structure Of E. Coli 24kda Domain In Complex With
Clorobiocin
Length = 205
Score = 224 bits (570), Expect = 4e-59
Identities = 108/208 (51%), Positives = 157/208 (74%), Gaps = 5/208 (2%)
Query: 14 GLEGVRKRPGMYIGDTNVG-GLHHMVYEVVDNAVDESMAGFCDTINITLTDEGSCIVEDN 72
GL+ VRKRPGMYIGDT+ G GLHHMV+EVVDNA+DE++AG C I +T+ + S V+D+
Sbjct: 1 GLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDD 60
Query: 73 GRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSVVNALSKRLIMTI 132
GRGIP IHP E + A V++T+LHAGGKFD+++YKVSGGLHGVGVSVVNALS++L + I
Sbjct: 61 GRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVI 120
Query: 133 KKEGQIYRQEFEKGIPTSELEIIGKTKSAKESGTTIEFFPD-ESVMEVVEFQAGILQKRF 191
++EG+I+RQ +E G+P + L + G+T +++GT + F+P E+ V EF+ IL KR
Sbjct: 121 QREGKIHRQIYEHGVPQAPLAVTGET---EKTGTMVRFWPSLETFTNVTEFEYEILAKRL 177
Query: 192 KEMAYLNDGLKISFKEEKTQLQETYFYE 219
+E+++LN G+ I ++++ ++ + YE
Sbjct: 178 RELSFLNSGVSIRLRDKRDGKEDHFHYE 205
>pdb|1BJT| Topoisomerase Ii Residues 409 - 1201
pdb|1BGW| Topoisomerase Residues 410 - 1202,
Length = 793
Score = 66.6 bits (161), Expect = 1e-11
Identities = 46/131 (35%), Positives = 72/131 (54%), Gaps = 9/131 (6%)
Query: 410 SKDPLESEIFLVEGDSA-----GGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEE 464
+K+ + + L EGDSA G A GRD + PL+GK+LNV ++ +ILK+ E
Sbjct: 29 TKEGYKCTLVLTEGDSALSLAVAGLAVVGRD--YYGCYPLRGKMLNVREASADQILKNAE 86
Query: 465 IKNMITAFGCGIQESF-DIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIE-QG 522
I+ + G ++ + D + LRY ++IMTD D DGSHI+ L++ F L++ QG
Sbjct: 87 IQAIKKIMGLQHRKKYEDTKSLRYGHLMIMTDQDHDGSHIKGLIINFLESSFLGLLDIQG 146
Query: 523 HVYIAQAPLYK 533
+ P+ K
Sbjct: 147 FLLEFITPIIK 157
>pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of
Initiation Factor Eif2 From Pyrococcus Abyssi Complexed
With Gdp-Mg2+
Length = 410
Score = 32.7 bits (73), Expect = 0.16
Identities = 20/56 (35%), Positives = 28/56 (49%), Gaps = 2/56 (3%)
Query: 75 GIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSVVNALSKRLIM 130
G+P + H K T + L AGG+F + Y GGL GVG + L+K +M
Sbjct: 254 GVPYEEHGRIKYEPITTEIVSLQAGGQFVEEAY--PGGLVGVGTKLDPYLTKGDLM 307
>pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant
pdb|1KK2|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdp-Mg2+
pdb|1KK1|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdpnp-Mg2+
Length = 410
Score = 32.7 bits (73), Expect = 0.16
Identities = 20/56 (35%), Positives = 28/56 (49%), Gaps = 2/56 (3%)
Query: 75 GIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSVVNALSKRLIM 130
G+P + H K T + L AGG+F + Y GGL GVG + L+K +M
Sbjct: 254 GVPYEEHGRIKYEPITTEIVSLQAGGQFVEEAY--PGGLVGVGTKLDPYLTKGDLM 307
>pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi
Length = 410
Score = 32.3 bits (72), Expect = 0.20
Identities = 19/52 (36%), Positives = 26/52 (49%), Gaps = 2/52 (3%)
Query: 75 GIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSVVNALSK 126
G+P + H K T + L AGG+F + Y GGL GVG + L+K
Sbjct: 254 GVPYEEHGRIKYEPITTEIVSLQAGGQFVEEAY--PGGLVGVGTKLDPYLTK 303
>pdb|1HW5|A Chain A, The CapCRP VARIANT T127LS128A
pdb|1HW5|B Chain B, The CapCRP VARIANT T127LS128A
Length = 210
Score = 30.8 bits (68), Expect = 0.59
Identities = 30/143 (20%), Positives = 60/143 (40%), Gaps = 20/143 (13%)
Query: 331 EGQTKSKLGSSYARALVSKLVYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELT 390
EGQ +S + V+++ Y K Q ++ NP+ +L + + +++ + L
Sbjct: 79 EGQERSAWVRAKTACEVAEISYKKFRQLIQVNPD---------ILMRLSAQMARRLQVLA 129
Query: 391 RKKDNLSVGTLPGKLADCQSKDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILN 450
K NL+ + G++A + + G K R + G+I+
Sbjct: 130 EKVGNLAFLDVTGRIAQTLLNLAKQPDAMT---HPDGMQIKITRQEI--------GQIVG 178
Query: 451 VEKSHLSKILKSEEIKNMITAFG 473
+ + +ILK E +N+I+A G
Sbjct: 179 CSRETVGRILKMLEDQNLISAHG 201
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation
pdb|1KK8|A Chain A, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 837
Score = 30.0 bits (66), Expect = 1.0
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 410 SKDPLESEIFLV-EGDSAGGSAKQGRDRVFQAILPLKGKILN 450
SK+PL +E+F E + GG K+G+ FQ I + + LN
Sbjct: 613 SKEPLVAELFKAPEEPAGGGKKKKGKSSAFQTISAVHRESLN 654
>pdb|1L2O|A Chain A, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1B7T|A Chain A, Myosin Digested By Papain
Length = 835
Score = 30.0 bits (66), Expect = 1.0
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 410 SKDPLESEIFLV-EGDSAGGSAKQGRDRVFQAILPLKGKILN 450
SK+PL +E+F E + GG K+G+ FQ I + + LN
Sbjct: 613 SKEPLVAELFKAPEEPAGGGKKKKGKSSAFQTISAVHRESLN 654
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|B Chain B, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
Length = 831
Score = 30.0 bits (66), Expect = 1.0
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 410 SKDPLESEIFLV-EGDSAGGSAKQGRDRVFQAILPLKGKILN 450
SK+PL +E+F E + GG K+G+ FQ I + + LN
Sbjct: 609 SKEPLVAELFKAPEEPAGGGKKKKGKSSAFQTISAVHRESLN 650
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State
Length = 830
Score = 30.0 bits (66), Expect = 1.0
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 410 SKDPLESEIFLV-EGDSAGGSAKQGRDRVFQAILPLKGKILN 450
SK+PL +E+F E + GG K+G+ FQ I + + LN
Sbjct: 608 SKEPLVAELFKAPEEPAGGGKKKKGKSSAFQTISAVHRESLN 649
>pdb|1IW7|D Chain D, Crystal Structure Of The Rna Polymerase Holoenzyme From
Thermus Thermophilus At 2.6a Resolution
pdb|1IW7|N Chain N, Crystal Structure Of The Rna Polymerase Holoenzyme From
Thermus Thermophilus At 2.6a Resolution
Length = 1524
Score = 30.0 bits (66), Expect = 1.0
Identities = 28/108 (25%), Positives = 52/108 (47%), Gaps = 13/108 (12%)
Query: 518 LIEQGHVYIAQAPLYKYKKGKTEIYLKDSVALDHFLIEHGINSVDIEGIGKNDLM-NLLK 576
L E + + +A +Y ++ E+ D VA L + G D+ G + DL+ N+++
Sbjct: 387 LHEPASILVVKARVYPFEDD-VEVSTGDRVAPGDVLADGGKVKSDVYGRVEVDLVRNVVR 445
Query: 577 VARHYRYALLELEKRYNLLEILRFLIETKDALSLDMKVLEKSILEKLE 624
V Y +++ R I + L E LD++ LEK +LE+++
Sbjct: 446 VVESY-----DIDARMGAEAIQQLLKE------LDLEALEKELLEEMK 482
>pdb|1DB9|A Chain A, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
Length = 200
Score = 29.3 bits (64), Expect = 1.7
Identities = 29/143 (20%), Positives = 60/143 (41%), Gaps = 20/143 (13%)
Query: 331 EGQTKSKLGSSYARALVSKLVYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELT 390
EGQ +S + V+++ Y K Q ++ NP+ +L + + +++ + +
Sbjct: 71 EGQERSAWVRAKTACEVAEISYKKFRQLIQVNPD---------ILMRLSAQMARRLQVTS 121
Query: 391 RKKDNLSVGTLPGKLADCQSKDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILN 450
K NL+ + G++A + + G K R + G+I+
Sbjct: 122 EKVGNLAFLDVTGRIAQTLLNLAKQPDAMT---HPDGMQIKITRQEI--------GQIVG 170
Query: 451 VEKSHLSKILKSEEIKNMITAFG 473
+ + +ILK E +N+I+A G
Sbjct: 171 CSRDTVGRILKMLEDQNLISAHG 193
>pdb|1G6N|B Chain B, 2.1 Angstrom Structure Of Cap-Camp
pdb|1G6N|A Chain A, 2.1 Angstrom Structure Of Cap-Camp
pdb|2CGP|A Chain A, Catabolite Gene Activator ProteinDNA COMPLEX,
ADENOSINE-3', 5'-Cyclic-Monophosphate
Length = 210
Score = 29.3 bits (64), Expect = 1.7
Identities = 29/143 (20%), Positives = 60/143 (41%), Gaps = 20/143 (13%)
Query: 331 EGQTKSKLGSSYARALVSKLVYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELT 390
EGQ +S + V+++ Y K Q ++ NP+ +L + + +++ + +
Sbjct: 79 EGQERSAWVRAKTACEVAEISYKKFRQLIQVNPD---------ILMRLSAQMARRLQVTS 129
Query: 391 RKKDNLSVGTLPGKLADCQSKDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILN 450
K NL+ + G++A + + G K R + G+I+
Sbjct: 130 EKVGNLAFLDVTGRIAQTLLNLAKQPDAMT---HPDGMQIKITRQEI--------GQIVG 178
Query: 451 VEKSHLSKILKSEEIKNMITAFG 473
+ + +ILK E +N+I+A G
Sbjct: 179 CSRETVGRILKMLEDQNLISAHG 201
>pdb|1DB7|A Chain A, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
pdb|1DB8|A Chain A, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
pdb|1DBC|A Chain A, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
pdb|1DBC|B Chain B, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
Length = 200
Score = 29.3 bits (64), Expect = 1.7
Identities = 29/143 (20%), Positives = 60/143 (41%), Gaps = 20/143 (13%)
Query: 331 EGQTKSKLGSSYARALVSKLVYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELT 390
EGQ +S + V+++ Y K Q ++ NP+ +L + + +++ + +
Sbjct: 71 EGQERSAWVRAKTACEVAEISYKKFRQLIQVNPD---------ILMRLSAQMARRLQVTS 121
Query: 391 RKKDNLSVGTLPGKLADCQSKDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILN 450
K NL+ + G++A + + G K R + G+I+
Sbjct: 122 EKVGNLAFLDVTGRIAQTLLNLAKQPDAMT---HPDGMQIKITRQEI--------GQIVG 170
Query: 451 VEKSHLSKILKSEEIKNMITAFG 473
+ + +ILK E +N+I+A G
Sbjct: 171 CSRETVGRILKMLEDQNLISAHG 193
>pdb|1LB2|A Chain A, Structure Of The E. Coli Alpha C-Terminal Domain Of Rna
Polymerase In Complex With Cap And Dna
pdb|1RUN|A Chain A, Cap-Dna Recognition: Interactions Involving Aromatic Amino
Acids
pdb|1J59|A Chain A, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1J59|B Chain B, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1RUN|B Chain B, Cap-Dna Recognition: Interactions Involving Aromatic Amino
Acids
Length = 209
Score = 29.3 bits (64), Expect = 1.7
Identities = 29/143 (20%), Positives = 60/143 (41%), Gaps = 20/143 (13%)
Query: 331 EGQTKSKLGSSYARALVSKLVYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELT 390
EGQ +S + V+++ Y K Q ++ NP+ +L + + +++ + +
Sbjct: 78 EGQERSAWVRAKTACEVAEISYKKFRQLIQVNPD---------ILMRLSAQMARRLQVTS 128
Query: 391 RKKDNLSVGTLPGKLADCQSKDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILN 450
K NL+ + G++A + + G K R + G+I+
Sbjct: 129 EKVGNLAFLDVTGRIAQTLLNLAKQPDAMT---HPDGMQIKITRQEI--------GQIVG 177
Query: 451 VEKSHLSKILKSEEIKNMITAFG 473
+ + +ILK E +N+I+A G
Sbjct: 178 CSRETVGRILKMLEDQNLISAHG 200
>pdb|1CGP|A Chain A, Catabolite Gene Activator Protein Complex With Dna
(Cap-Dna Complex)
pdb|1CGP|B Chain B, Catabolite Gene Activator Protein Complex With Dna
(Cap-Dna Complex)
Length = 205
Score = 29.3 bits (64), Expect = 1.7
Identities = 29/143 (20%), Positives = 60/143 (41%), Gaps = 20/143 (13%)
Query: 331 EGQTKSKLGSSYARALVSKLVYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELT 390
EGQ +S + V+++ Y K Q ++ NP+ +L + + +++ + +
Sbjct: 78 EGQERSAWVRAKTACEVAEISYKKFRQLIQVNPD---------ILMRLSAQMARRLQVTS 128
Query: 391 RKKDNLSVGTLPGKLADCQSKDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILN 450
K NL+ + G++A + + G K R + G+I+
Sbjct: 129 EKVGNLAFLDVTGRIAQTLLNLAKQPDAMT---HPDGMQIKITRQEI--------GQIVG 177
Query: 451 VEKSHLSKILKSEEIKNMITAFG 473
+ + +ILK E +N+I+A G
Sbjct: 178 CSRETVGRILKMLEDQNLISAHG 200
>pdb|1PFR|A Chain A, Ribonucleoside-Diphosphate Reductase 1 Beta Chain
pdb|1PFR|B Chain B, Ribonucleoside-Diphosphate Reductase 1 Beta Chain
Length = 340
Score = 28.9 bits (63), Expect = 2.2
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 17/115 (14%)
Query: 553 LIEHGINSVDIEGIGKNDLMNLLKVARHYRYALLELEKRYNLLEILRFLIETKDALSLDM 612
L+ G ++V+ GK ++L ++ + L+ + N LE +RF + A +
Sbjct: 169 LLGEGTHTVN----GKTVTVSLRELKKKLYLCLMSV----NALEAIRFYV----AFACSF 216
Query: 613 KVLEKSILEKLEGLNYQILRSFATEESLHL-HTQTPKGLVEFNLDDNLFKEVLFE 666
E+ ++E N +I+R A +E+LHL TQ L+ DD E+ E
Sbjct: 217 AFAERELMEG----NAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEE 267
>pdb|2TMA|A Chain A, Tropomyosin
pdb|2TMA|B Chain B, Tropomyosin
Length = 284
Score = 28.5 bits (62), Expect = 2.9
Identities = 22/103 (21%), Positives = 45/103 (43%), Gaps = 4/103 (3%)
Query: 207 EEKTQLQETYFYEDGLKQFVKDSAKK--ELLTPIISFKSMDEETRTSIEVALAYADDYNE 264
EEK ++QE E K +D+ +K E+ ++ +S E E++ + E
Sbjct: 138 EEKMEIQEIQLKE--AKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEE 195
Query: 265 NTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYIGNNIKTKESR 307
+ NN+K+ E + K + ++ + + +K E+R
Sbjct: 196 EIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETR 238
>pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|B Chain B, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|C Chain C, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|D Chain D, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
Length = 284
Score = 28.5 bits (62), Expect = 2.9
Identities = 22/103 (21%), Positives = 45/103 (43%), Gaps = 4/103 (3%)
Query: 207 EEKTQLQETYFYEDGLKQFVKDSAKK--ELLTPIISFKSMDEETRTSIEVALAYADDYNE 264
EEK ++QE E K +D+ +K E+ ++ +S E E++ + E
Sbjct: 138 EEKMEIQEIQLKE--AKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEE 195
Query: 265 NTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYIGNNIKTKESR 307
+ NN+K+ E + K + ++ + + +K E+R
Sbjct: 196 EIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETR 238
>pdb|1LDJ|A Chain A, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 760
Score = 28.5 bits (62), Expect = 2.9
Identities = 29/125 (23%), Positives = 50/125 (39%), Gaps = 26/125 (20%)
Query: 187 LQKRFKEMAYLNDGLKISFKEEKTQLQETYFYEDGLKQFVKDSAKKELLTPIISFKSMDE 246
L + + ++ + DGL E +L ET+ + GL K ++
Sbjct: 303 LGRMYNLVSRIQDGLG-----ELKKLLETHIHNQGLAAIEKCG------------EAALN 345
Query: 247 ETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYIGNNIKTKES 306
+ + ++ L YN +S NN +AGF L KA ++I NN TK +
Sbjct: 346 DPKMYVQTVLDVHKKYNALVMSAFNN---------DAGFVAALDKACGRFINNNAVTKMA 396
Query: 307 RPISE 311
+ S+
Sbjct: 397 QSSSK 401
>pdb|1RUO|B Chain B, Cap-Dna Recognition: Interactions Involving Aromatic Amino
Acids
pdb|1RUO|A Chain A, Cap-Dna Recognition: Interactions Involving Aromatic Amino
Acids
Length = 209
Score = 28.5 bits (62), Expect = 2.9
Identities = 29/143 (20%), Positives = 60/143 (41%), Gaps = 20/143 (13%)
Query: 331 EGQTKSKLGSSYARALVSKLVYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELT 390
EGQ +S + V+++ Y K Q ++ NP+ +L + + +++ + +
Sbjct: 78 EGQERSAWVRAKTACEVAEISYKKFRQLIQVNPD---------ILMRLSAQMARRLQVTS 128
Query: 391 RKKDNLSVGTLPGKLADCQSKDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILN 450
K NL+ + G++A + + G K R + G+I+
Sbjct: 129 EKVGNLAFLDVTGRIAQTLLNLAKQPDAMT---HPDGMQIKITRQEI--------GQIVG 177
Query: 451 VEKSHLSKILKSEEIKNMITAFG 473
+ + +ILK E +N+I+A G
Sbjct: 178 CSRFTVGRILKMLEDQNLISAHG 200
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 28.1 bits (61), Expect = 3.8
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 47 DESMAGFCDTINITLTDEGSCIVEDNGRGIPVDIHPTE 84
D + AGF DT+ L ++ +EDN +P+ + E
Sbjct: 76 DAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKE 113
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 27.7 bits (60), Expect = 5.0
Identities = 21/83 (25%), Positives = 40/83 (47%), Gaps = 7/83 (8%)
Query: 643 HTQTPKGLVEFNLDDNLFKEVLFEEANYTYQKLMEYNLDFLENKDILAFLEEVENHAKKG 702
H+ + + N++ F E E A Y + +E + E++DI A +E++E+H
Sbjct: 4 HSASGAPALSTNIESGKFDEKAAEAAAYQPKPKVEDD----EDEDIDALIEDLESHDGHD 59
Query: 703 ANIQRYK---GLGEMNPNDLWET 722
A + + G G + P D+ +T
Sbjct: 60 AEEEEEEATPGGGRVVPEDMLQT 82
>pdb|2AV8|A Chain A, Y122f Mutant Of Ribonucleotide Reductase From Escherichia
Coli
pdb|2AV8|B Chain B, Y122f Mutant Of Ribonucleotide Reductase From Escherichia
Coli
Length = 340
Score = 27.7 bits (60), Expect = 5.0
Identities = 29/115 (25%), Positives = 53/115 (45%), Gaps = 17/115 (14%)
Query: 553 LIEHGINSVDIEGIGKNDLMNLLKVARHYRYALLELEKRYNLLEILRFLIETKDALSLDM 612
L+ G ++V+ GK ++L ++ + L+ + N LE +RF + + +
Sbjct: 169 LLGEGTHTVN----GKTVTVSLRELKKKLYLCLMSV----NALEAIRFYV----SFACSF 216
Query: 613 KVLEKSILEKLEGLNYQILRSFATEESLHL-HTQTPKGLVEFNLDDNLFKEVLFE 666
E+ ++E N +I+R A +E+LHL TQ L+ DD E+ E
Sbjct: 217 AFAERELMEG----NAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEE 267
>pdb|1QMV|A Chain A, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|B Chain B, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|C Chain C, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|D Chain D, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|E Chain E, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|F Chain F, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|G Chain G, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|H Chain H, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|I Chain I, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|J Chain J, Thioredoxin Peroxidase B From Red Blood Cells
Length = 197
Score = 27.7 bits (60), Expect = 5.0
Identities = 17/51 (33%), Positives = 23/51 (44%), Gaps = 2/51 (3%)
Query: 657 DNLFKEVLFEEANYTYQKLMEYNLD--FLENKDILAFLEEVENHAKKGANI 705
D FKEV + Y L Y LD F+ +I+AF E+ K G +
Sbjct: 21 DGAFKEVKLSDYKGKYVVLFFYPLDFTFVXPTEIIAFSNRAEDFRKLGCEV 71
>pdb|1AV8|A Chain A, Ribonucleotide Reductase R2 Subunit From E. Coli
pdb|1AV8|B Chain B, Ribonucleotide Reductase R2 Subunit From E. Coli
Length = 340
Score = 27.7 bits (60), Expect = 5.0
Identities = 29/115 (25%), Positives = 53/115 (45%), Gaps = 17/115 (14%)
Query: 553 LIEHGINSVDIEGIGKNDLMNLLKVARHYRYALLELEKRYNLLEILRFLIETKDALSLDM 612
L+ G ++V+ GK ++L ++ + L+ + N LE +RF + + +
Sbjct: 169 LLGEGTHTVN----GKTVTVSLRELKKKLYLCLMSV----NALEAIRFYV----SFACSF 216
Query: 613 KVLEKSILEKLEGLNYQILRSFATEESLHL-HTQTPKGLVEFNLDDNLFKEVLFE 666
E+ ++E N +I+R A +E+LHL TQ L+ DD E+ E
Sbjct: 217 AFAERELMEG----NAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEE 267
>pdb|1RNR|A Chain A, Protein R2 Of Ribonucleotide Reductase (E.C.1.17.4.1)
Mutant With Phe 208 Replaced By Tyr (F208y) Then
Converted To Dopa (Dihydroxy Phenylalanine)
pdb|1RNR|B Chain B, Protein R2 Of Ribonucleotide Reductase (E.C.1.17.4.1)
Mutant With Phe 208 Replaced By Tyr (F208y) Then
Converted To Dopa (Dihydroxy Phenylalanine)
Length = 340
Score = 27.7 bits (60), Expect = 5.0
Identities = 29/115 (25%), Positives = 53/115 (45%), Gaps = 17/115 (14%)
Query: 553 LIEHGINSVDIEGIGKNDLMNLLKVARHYRYALLELEKRYNLLEILRFLIETKDALSLDM 612
L+ G ++V+ GK ++L ++ + L+ + N LE +RF + + +
Sbjct: 169 LLGEGTHTVN----GKTVTVSLRELKKKLYLCLMSV----NALEAIRFYV----SFACSF 216
Query: 613 KVLEKSILEKLEGLNYQILRSFATEESLHL-HTQTPKGLVEFNLDDNLFKEVLFE 666
E+ ++E N +I+R A +E+LHL TQ L+ DD E+ E
Sbjct: 217 AFAERELMEG----NAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEE 267
>pdb|1RIB|A Chain A, Protein R2 Of Ribonucleotide Reductase (E.C.1.17.4.1)
pdb|1RIB|B Chain B, Protein R2 Of Ribonucleotide Reductase (E.C.1.17.4.1)
pdb|1MRR|A Chain A, Protein R2 Of Ribonucleotide Reductase (E.C.1.17.4.1)
Complex With Manganese (Substituted For Iron)
pdb|1MRR|B Chain B, Protein R2 Of Ribonucleotide Reductase (E.C.1.17.4.1)
Complex With Manganese (Substituted For Iron)
Length = 375
Score = 27.7 bits (60), Expect = 5.0
Identities = 29/115 (25%), Positives = 53/115 (45%), Gaps = 17/115 (14%)
Query: 553 LIEHGINSVDIEGIGKNDLMNLLKVARHYRYALLELEKRYNLLEILRFLIETKDALSLDM 612
L+ G ++V+ GK ++L ++ + L+ + N LE +RF + + +
Sbjct: 169 LLGEGTHTVN----GKTVTVSLRELKKKLYLCLMSV----NALEAIRFYV----SFACSF 216
Query: 613 KVLEKSILEKLEGLNYQILRSFATEESLHL-HTQTPKGLVEFNLDDNLFKEVLFE 666
E+ ++E N +I+R A +E+LHL TQ L+ DD E+ E
Sbjct: 217 AFAERELMEG----NAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEE 267
>pdb|1JQC|B Chain B, Mn Substituted Ribonucleotide Reductase R2 From E. Coli
Oxidized By Hydrogen Peroxide And Hydroxylamine
pdb|1XIK|B Chain B, Ribonucleoside-Diphosphate Reductase 1 Beta Chain
pdb|1JPR|B Chain B, Mn Substituted Ribonucleotide Reductase R2 From E. Coli
Oxidized By Nitric Oxide
pdb|1JQC|A Chain A, Mn Substituted Ribonucleotide Reductase R2 From E. Coli
Oxidized By Hydrogen Peroxide And Hydroxylamine
pdb|1XIK|A Chain A, Ribonucleoside-Diphosphate Reductase 1 Beta Chain
pdb|1JPR|A Chain A, Mn Substituted Ribonucleotide Reductase R2 From E. Coli
Oxidized By Nitric Oxide
Length = 375
Score = 27.7 bits (60), Expect = 5.0
Identities = 29/115 (25%), Positives = 53/115 (45%), Gaps = 17/115 (14%)
Query: 553 LIEHGINSVDIEGIGKNDLMNLLKVARHYRYALLELEKRYNLLEILRFLIETKDALSLDM 612
L+ G ++V+ GK ++L ++ + L+ + N LE +RF + + +
Sbjct: 169 LLGEGTHTVN----GKTVTVSLRELKKKLYLCLMSV----NALEAIRFYV----SFACSF 216
Query: 613 KVLEKSILEKLEGLNYQILRSFATEESLHL-HTQTPKGLVEFNLDDNLFKEVLFE 666
E+ ++E N +I+R A +E+LHL TQ L+ DD E+ E
Sbjct: 217 AFAERELMEG----NAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEE 267
>pdb|1LDK|A Chain A, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 396
Score = 27.7 bits (60), Expect = 5.0
Identities = 28/118 (23%), Positives = 46/118 (38%), Gaps = 26/118 (22%)
Query: 187 LQKRFKEMAYLNDGLKISFKEEKTQLQETYFYEDGLKQFVKDSAKKELLTPIISFKSMDE 246
L + + ++ + DGL E +L ET+ + GL K ++
Sbjct: 305 LGRMYNLVSRIQDGLG-----ELKKLLETHIHNQGLAAIEKCG------------EAALN 347
Query: 247 ETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYIGNNIKTK 304
+ + ++ L YN +S NN +AGF L KA ++I NN TK
Sbjct: 348 DPKMYVQTVLDVHKKYNALVMSAFNN---------DAGFVAALDKACGRFINNNAVTK 396
>pdb|3DNI| Deoxyribonuclease I (Dnase I) (E.C.3.1.21.1)
pdb|2DNJ|A Chain A, Deoxyribonuclease I (Dnase I) (E.C.3.1.21.1) Complexed
With Dna (5'-D(GpCpGpApTpCpGpCp)-3')
pdb|1DNK|A Chain A, Deoxyribonuclease I (Dnase I) (E.C.3.1.21.1) Complexed
With Dna (5'-D(GpGpTpApTpApCpCp)-3')
Length = 260
Score = 27.3 bits (59), Expect = 6.5
Identities = 15/52 (28%), Positives = 25/52 (47%), Gaps = 2/52 (3%)
Query: 205 FKEEKTQLQETYFYEDGLKQFVKDSAKKELLTPIISFKSMDEETRTSIEVAL 256
F+ K + +TY Y+DG + DS +E ++ F S + + VAL
Sbjct: 84 FRPNKVSVLDTYQYDDGCESCGNDSFSRE--PAVVKFSSHSTKVKEFAIVAL 133
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 26.9 bits (58), Expect = 8.5
Identities = 15/43 (34%), Positives = 22/43 (50%), Gaps = 2/43 (4%)
Query: 44 NAV--DESMAGFCDTINITLTDEGSCIVEDNGRGIPVDIHPTE 84
NAV D + AGF DT+ L + +EDN +P+ + E
Sbjct: 71 NAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKE 113
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.316 0.136 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,281,343
Number of Sequences: 13198
Number of extensions: 182357
Number of successful extensions: 544
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 513
Number of HSP's gapped (non-prelim): 35
length of query: 773
length of database: 2,899,336
effective HSP length: 96
effective length of query: 677
effective length of database: 1,632,328
effective search space: 1105086056
effective search space used: 1105086056
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)