BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645130|ref|NP_207300.1| hypothetical protein
[Helicobacter pylori 26695]
         (246 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1FHV|A  Chain A, Crystal Structure Analysis Of O-Succiny...    28  0.75
pdb|1FHU|A  Chain A, Crystal Structure Analysis Of O-Succiny...    28  0.75
pdb|2CEP|    Cytochrome C Peroxidase (E.C.1.11.1.5) Mutant W...    25  8.3

>pdb|1FHV|A Chain A, Crystal Structure Analysis Of O-Succinylbenzoate Synthase
           From E. Coli Complexed With Mg And Osb
          Length = 323

 Score = 28.5 bits (62), Expect = 0.75
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 5/51 (9%)

Query: 3   NPPYNDRTSFIKQDIKNKDFIFEIDHHLKSRDLGISFLKSFAILKPAFICV 53
           NP Y DR +F+++  K +D     D    +R+ GI+     ++ +P F  V
Sbjct: 182 NPDYRDRIAFLEEPCKTRD-----DSRAFARETGIAIAWDESLREPDFAFV 227



>pdb|1FHU|A Chain A, Crystal Structure Analysis Of O-Succinylbenzoate Synthase
           From E. Coli
          Length = 320

 Score = 28.5 bits (62), Expect = 0.75
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 5/51 (9%)

Query: 3   NPPYNDRTSFIKQDIKNKDFIFEIDHHLKSRDLGISFLKSFAILKPAFICV 53
           NP Y DR +F+++  K +D     D    +R+ GI+     ++ +P F  V
Sbjct: 179 NPDYRDRIAFLEEPCKTRD-----DSRAFARETGIAIAWDESLREPDFAFV 224



>pdb|2CEP|   Cytochrome C Peroxidase (E.C.1.11.1.5) Mutant With Met Ile Added
           At N-Terminus And Met 230 Replaced By Ile (Mi,M230i)
          Length = 296

 Score = 25.0 bits (53), Expect = 8.3
 Identities = 18/65 (27%), Positives = 28/65 (42%), Gaps = 2/65 (3%)

Query: 41  KSFAILKPAFICVLHPLSYL--IKEANFKQLKLFKDHYRLLDALVVSSKSFTKSNEFPIV 98
           KS  I+ P    ++    YL  +KE    Q K FKD  +  + L+ +  +F K    P +
Sbjct: 228 KSGYIMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFI 287

Query: 99  IALYE 103
               E
Sbjct: 288 FKTLE 292



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.328    0.145    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,471,878
Number of Sequences: 13198
Number of extensions: 59195
Number of successful extensions: 167
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 167
Number of HSP's gapped (non-prelim): 3
length of query: 246
length of database: 2,899,336
effective HSP length: 86
effective length of query: 160
effective length of database: 1,764,308
effective search space: 282289280
effective search space used: 282289280
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)