BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645131|ref|NP_207301.1| hypothetical protein
[Helicobacter pylori 26695]
         (49 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1QJO|A  Chain A, Innermost Lipoyl Domain Of The Pyruvate...    28  0.28
pdb|1MGP|A  Chain A, Hypothetical Protein Tm841 From Thermot...    23  6.9

>pdb|1QJO|A Chain A, Innermost Lipoyl Domain Of The Pyruvate Dehydrogenase
          From Escherichia Coli
          Length = 80

 Score = 27.7 bits (60), Expect = 0.28
 Identities = 11/29 (37%), Positives = 19/29 (64%)

Query: 2  SLIKVSGDKKAIEVSIPLTSILGKVRVKI 30
          SLI V GDK ++EV  P   ++ +++V +
Sbjct: 33 SLITVEGDKASMEVPAPFAGVVKELKVNV 61



>pdb|1MGP|A Chain A, Hypothetical Protein Tm841 From Thermotoga Maritima
           Reveals Fatty Acid Binding Function
          Length = 313

 Score = 23.1 bits (48), Expect = 6.9
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 4/39 (10%)

Query: 5   KVSGDKKAIEVSIPL----TSILGKVRVKIRHAFSDYGI 39
           KV GDKKAIE  I      T    K+RV   HA ++ G+
Sbjct: 230 KVRGDKKAIEALIEKLREDTPEGSKLRVIGVHADNEAGV 268



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.319    0.135    0.347 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 203,321
Number of Sequences: 13198
Number of extensions: 4284
Number of successful extensions: 13
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 2
length of query: 49
length of database: 2,899,336
effective HSP length: 25
effective length of query: 24
effective length of database: 2,569,386
effective search space: 61665264
effective search space used: 61665264
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)