BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644639|ref|NP_206807.1| orotidine 5*-phosphate
decarboxylase (pyrF) [Helicobacter pylori 26695]
(227 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1DBT|A Chain A, Crystal Structure Of Orotidine 5'-Monop... 139 2e-34
pdb|1EIX|C Chain C, Structure Of Orotidine 5'-Monophosphate... 123 2e-29
pdb|1JJK|A Chain A, Selenomethionine Substitution Of Orotid... 119 2e-28
pdb|1LOQ|A Chain A, Crystal Structure Of Orotidine Monophos... 53 3e-08
pdb|1LOR|A Chain A, Crystal Structure Of Orotidine 5'-Monop... 53 3e-08
pdb|1DVJ|A Chain A, Crystal Structure Of Orotidine Monophos... 53 3e-08
pdb|1LOL|A Chain A, Crystal Structure Of Orotidine Monophos... 53 3e-08
pdb|1DV7|A Chain A, Crystal Structure Of Orotidine Monophos... 53 3e-08
pdb|1KM2|A Chain A, Crystal Structure Of Orotidine Monophos... 52 6e-08
pdb|1KM1|A Chain A, Orotidine Monophosphate Decarboxylase M... 52 7e-08
pdb|1KM5|A Chain A, Crystal Structure Of Odcase Mutant D75n... 51 1e-07
pdb|1KM0|A Chain A, Crystal Structure Of Orotidine Monophos... 51 1e-07
pdb|1KM4|A Chain A, Crystal Structure Of Odcase Mutant K72a... 50 2e-07
pdb|1KM3|A Chain A, Crystal Structure Of Odcase Mutant K42a... 50 2e-07
pdb|1KLY|A Chain A, Orotidine Monophosphate Decarboxylase D... 50 2e-07
pdb|1KLZ|A Chain A, Crystal Structure Of Orotidine Monophos... 50 3e-07
pdb|1KM6|A Chain A, Crystal Structure Of Odcase Mutant D70a... 47 1e-06
pdb|1LOS|A Chain A, Crystal Structure Of Orotidine Monophos... 47 2e-06
pdb|1DQW|A Chain A, Crystal Structure Of Orotidine 5'-Phosp... 35 0.009
>pdb|1DBT|A Chain A, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Bacillus Subtilis Complexed With Ump
pdb|1DBT|B Chain B, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Bacillus Subtilis Complexed With Ump
pdb|1DBT|C Chain C, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Bacillus Subtilis Complexed With Ump
Length = 239
Score = 139 bits (351), Expect = 2e-34
Identities = 83/219 (37%), Positives = 131/219 (58%), Gaps = 10/219 (4%)
Query: 5 VALDLEKKEDNLSLLQELKGLDLWAKVGLRSFIRDGAVFLDEIRKIDENFKIFLDLKLYD 64
+ALD E+ L+ L + L+ KVG+ F ++G + +++ + N ++FLDLKL+D
Sbjct: 8 IALDFASAEETLAFLAPFQQEPLFVKVGMELFYQEGPSIVKQLK--ERNCELFLDLKLHD 65
Query: 65 IPYTMANAALECAKLDIDMLTVHLSSAKSALTALMQRLN----ALKKRPLIMGVSALTSF 120
IP T+ A A L +D++ VH + K + A ++ L A KKRP ++ V+ LTS
Sbjct: 66 IPTTVNKAMKRLASLGVDLVNVHAAGGKKMMQAALEGLEEGTPAGKKRPSLIAVTQLTST 125
Query: 121 SEE---EFLMVYNAPLKTQAIKLSAMGKESGIDGVVCSVFESLAIKEALGKDFLTLTPGI 177
SE+ + L++ + + T + S +ESG+DGVVCSV E+ AI +A+ FLT+TPGI
Sbjct: 126 SEQIMKDELLIEKSLIDT-VVHYSKQAEESGLDGVVCSVHEAKAIYQAVSPSFLTVTPGI 184
Query: 178 RLDQNDKEDQERVANAKEAKQNLSDFIVVGRPIYQAKEP 216
R+ ++ DQ RVA A++ S IVVGR I +A++P
Sbjct: 185 RMSEDAANDQVRVATPAIAREKGSSAIVVGRSITKAEDP 223
>pdb|1EIX|C Chain C, Structure Of Orotidine 5'-Monophosphate Decarboxylase From
E. Coli, Co-Crystallised With The Inhibitor Bmp
pdb|1EIX|A Chain A, Structure Of Orotidine 5'-Monophosphate Decarboxylase From
E. Coli, Co-Crystallised With The Inhibitor Bmp
pdb|1EIX|B Chain B, Structure Of Orotidine 5'-Monophosphate Decarboxylase From
E. Coli, Co-Crystallised With The Inhibitor Bmp
pdb|1EIX|D Chain D, Structure Of Orotidine 5'-Monophosphate Decarboxylase From
E. Coli, Co-Crystallised With The Inhibitor Bmp
pdb|1L2U|A Chain A, Orotidine 5'-Monophosphate Decarboxylase From E. Coli
pdb|1L2U|B Chain B, Orotidine 5'-Monophosphate Decarboxylase From E. Coli
Length = 245
Score = 123 bits (308), Expect = 2e-29
Identities = 73/218 (33%), Positives = 120/218 (54%), Gaps = 4/218 (1%)
Query: 5 VALDLEKKEDNLSLLQELKGLDLWAKVGLRSFIRDGAVFLDEIRKIDENFKIFLDLKLYD 64
VALD ++D L+ + ++ D KVG F G F+ E+++ F IFLDLK +D
Sbjct: 19 VALDYHNRDDALAFVDKIDPRDCRLKVGKEMFTLFGPQFVRELQQ--RGFDIFLDLKFHD 76
Query: 65 IPYTMANAALECAKLDIDMLTVHLSSAKSALTALMQRLNAL-KKRPLIMGVSALTSFSEE 123
IP T A+A A L + M+ VH S +TA + L K PL++ V+ LTS
Sbjct: 77 IPNTAAHAVAAAADLGVWMVNVHASGGARMMTAAREALVPFGKDAPLLIAVTVLTSMEAS 136
Query: 124 EFL-MVYNAPLKTQAIKLSAMGKESGIDGVVCSVFESLAIKEALGKDFLTLTPGIRLDQN 182
+ + + A +L+A+ ++ G+DGVVCS E++ K+ G++F +TPGIR +
Sbjct: 137 DLVDLGMTLSPADYAERLAALTQKCGLDGVVCSAQEAVRFKQVFGQEFKLVTPGIRPQGS 196
Query: 183 DKEDQERVANAKEAKQNLSDFIVVGRPIYQAKEPREVV 220
+ DQ R+ ++A D++V+GRP+ Q+ +P + +
Sbjct: 197 EAGDQRRIMTPEQALSAGVDYMVIGRPVTQSVDPAQTL 234
>pdb|1JJK|A Chain A, Selenomethionine Substitution Of
Orotidine-5'-Monophosphate Decarboxylase From E. Coli
Causes A Change In Crystal Contacts And Space Group
pdb|1JJK|B Chain B, Selenomethionine Substitution Of
Orotidine-5'-Monophosphate Decarboxylase From E. Coli
Causes A Change In Crystal Contacts And Space Group
pdb|1JJK|C Chain C, Selenomethionine Substitution Of
Orotidine-5'-Monophosphate Decarboxylase From E. Coli
Causes A Change In Crystal Contacts And Space Group
pdb|1JJK|D Chain D, Selenomethionine Substitution Of
Orotidine-5'-Monophosphate Decarboxylase From E. Coli
Causes A Change In Crystal Contacts And Space Group
pdb|1JJK|E Chain E, Selenomethionine Substitution Of
Orotidine-5'-Monophosphate Decarboxylase From E. Coli
Causes A Change In Crystal Contacts And Space Group
pdb|1JJK|F Chain F, Selenomethionine Substitution Of
Orotidine-5'-Monophosphate Decarboxylase From E. Coli
Causes A Change In Crystal Contacts And Space Group
pdb|1JJK|G Chain G, Selenomethionine Substitution Of
Orotidine-5'-Monophosphate Decarboxylase From E. Coli
Causes A Change In Crystal Contacts And Space Group
pdb|1JJK|H Chain H, Selenomethionine Substitution Of
Orotidine-5'-Monophosphate Decarboxylase From E. Coli
Causes A Change In Crystal Contacts And Space Group
pdb|1JJK|I Chain I, Selenomethionine Substitution Of
Orotidine-5'-Monophosphate Decarboxylase From E. Coli
Causes A Change In Crystal Contacts And Space Group
pdb|1JJK|J Chain J, Selenomethionine Substitution Of
Orotidine-5'-Monophosphate Decarboxylase From E. Coli
Causes A Change In Crystal Contacts And Space Group
pdb|1JJK|K Chain K, Selenomethionine Substitution Of
Orotidine-5'-Monophosphate Decarboxylase From E. Coli
Causes A Change In Crystal Contacts And Space Group
pdb|1JJK|L Chain L, Selenomethionine Substitution Of
Orotidine-5'-Monophosphate Decarboxylase From E. Coli
Causes A Change In Crystal Contacts And Space Group
pdb|1JJK|M Chain M, Selenomethionine Substitution Of
Orotidine-5'-Monophosphate Decarboxylase From E. Coli
Causes A Change In Crystal Contacts And Space Group
pdb|1JJK|N Chain N, Selenomethionine Substitution Of
Orotidine-5'-Monophosphate Decarboxylase From E. Coli
Causes A Change In Crystal Contacts And Space Group
pdb|1JJK|O Chain O, Selenomethionine Substitution Of
Orotidine-5'-Monophosphate Decarboxylase From E. Coli
Causes A Change In Crystal Contacts And Space Group
pdb|1JJK|P Chain P, Selenomethionine Substitution Of
Orotidine-5'-Monophosphate Decarboxylase From E. Coli
Causes A Change In Crystal Contacts And Space Group
Length = 245
Score = 119 bits (299), Expect = 2e-28
Identities = 72/218 (33%), Positives = 117/218 (53%), Gaps = 4/218 (1%)
Query: 5 VALDLEKKEDNLSLLQELKGLDLWAKVGLRSFIRDGAVFLDEIRKIDENFKIFLDLKLYD 64
VALD ++D L+ + ++ D KVG F G F+ E+++ F IFLDLK +D
Sbjct: 19 VALDYHNRDDALAFVDKIDPRDCRLKVGKEXFTLFGPQFVRELQQ--RGFDIFLDLKFHD 76
Query: 65 IPYTMANAALECAKLDIDMLTVHLSSAKSALTALMQRLNAL-KKRPLIMGVSALTSFSEE 123
IP T A+A A L + + VH S TA + L K PL++ V+ LTS
Sbjct: 77 IPNTAAHAVAAAADLGVWXVNVHASGGARXXTAAREALVPFGKDAPLLIAVTVLTSXEAS 136
Query: 124 EFL-MVYNAPLKTQAIKLSAMGKESGIDGVVCSVFESLAIKEALGKDFLTLTPGIRLDQN 182
+ + + A +L+A+ ++ G+DGVVCS E++ K+ G++F +TPGIR +
Sbjct: 137 DLVDLGXTLSPADYAERLAALTQKCGLDGVVCSAQEAVRFKQVFGQEFKLVTPGIRPQGS 196
Query: 183 DKEDQERVANAKEAKQNLSDFIVVGRPIYQAKEPREVV 220
+ DQ R+ ++A D+ V+GRP+ Q+ +P + +
Sbjct: 197 EAGDQRRIXTPEQALSAGVDYXVIGRPVTQSVDPAQTL 234
>pdb|1LOQ|A Chain A, Crystal Structure Of Orotidine Monophosphate Decarboxylase
Complexed With Product Ump
Length = 228
Score = 53.1 bits (126), Expect = 3e-08
Identities = 57/231 (24%), Positives = 99/231 (42%), Gaps = 26/231 (11%)
Query: 2 QLCVALDLEKKEDNLSLLQELKGLDLWAKVGLRSFIRDGAVFLDEIRKIDENFKIFLDLK 61
+L +A+DL ++D L + E++ K+G + +G + E RK +I D K
Sbjct: 14 RLILAMDLMNRDDALRVTGEVREYIDTVKIGYPLVLSEGMDIIAEFRK-RFGXRIIADFK 72
Query: 62 LYDIPYTMANAALECAKLDIDMLTVHLSSAKSALTALMQRLNALKKRPLIMGVSALTSFS 121
+ DIP T K D + VH ++ A + + + V LT S
Sbjct: 73 VADIPETNEKICRATFKAGADAIIVHGFPGADSVRACLNVAEEMGRE-----VFLLTEMS 127
Query: 122 EEEFLMVYNAPLKTQAIKLSAMGKESGIDGVV--CSVFESLA-IKEALGKDFLTLTPGIR 178
M ++ A +++ MG + G+ V + E L+ ++E +G+D ++PG+
Sbjct: 128 HPGAEMF----IQGAADEIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVG 183
Query: 179 LDQNDKEDQERVANAKEAKQNLSDFIVVGRPIYQAKEPREV---VLELLKD 226
D + R A+A I+VGR IY A P ++E +KD
Sbjct: 184 AQGGDPGETLRFADA----------IIVGRSIYLADNPAAAAAGIIESIKD 224
>pdb|1LOR|A Chain A, Crystal Structure Of Orotidine 5'-Monophosphate Complexed
With Bmp
Length = 228
Score = 52.8 bits (125), Expect = 3e-08
Identities = 57/231 (24%), Positives = 99/231 (42%), Gaps = 26/231 (11%)
Query: 2 QLCVALDLEKKEDNLSLLQELKGLDLWAKVGLRSFIRDGAVFLDEIRKIDENFKIFLDLK 61
+L +A+DL ++D L + E++ K+G + +G + E RK +I D K
Sbjct: 14 RLILAMDLMNRDDALRVTGEVREYIDTVKIGYPLVLSEGMDIIAEFRK-RFGCRIIADFK 72
Query: 62 LYDIPYTMANAALECAKLDIDMLTVHLSSAKSALTALMQRLNALKKRPLIMGVSALTSFS 121
+ DIP T K D + VH ++ A + + + V LT S
Sbjct: 73 VADIPETNEKICRATFKAGADAIIVHGFPGADSVRACLNVAEEMGRE-----VFLLTEMS 127
Query: 122 EEEFLMVYNAPLKTQAIKLSAMGKESGIDGVV--CSVFESLA-IKEALGKDFLTLTPGIR 178
M ++ A +++ MG + G+ V + E L+ ++E +G+D ++PG+
Sbjct: 128 HPGAEMF----IQGAADEIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVG 183
Query: 179 LDQNDKEDQERVANAKEAKQNLSDFIVVGRPIYQAKEPREV---VLELLKD 226
D + R A+A I+VGR IY A P ++E +KD
Sbjct: 184 AQGGDPGETLRFADA----------IIVGRSIYLADNPAAAAAGIIESIKD 224
>pdb|1DVJ|A Chain A, Crystal Structure Of Orotidine Monophosphate Decarboxylase
Complexed With 6-Azaump
pdb|1DVJ|C Chain C, Crystal Structure Of Orotidine Monophosphate Decarboxylase
Complexed With 6-Azaump
pdb|1DVJ|D Chain D, Crystal Structure Of Orotidine Monophosphate Decarboxylase
Complexed With 6-Azaump
pdb|1DVJ|B Chain B, Crystal Structure Of Orotidine Monophosphate Decarboxylase
Complexed With 6-Azaump
Length = 246
Score = 52.8 bits (125), Expect = 3e-08
Identities = 57/231 (24%), Positives = 99/231 (42%), Gaps = 26/231 (11%)
Query: 2 QLCVALDLEKKEDNLSLLQELKGLDLWAKVGLRSFIRDGAVFLDEIRKIDENFKIFLDLK 61
+L +A+DL ++D L + E++ K+G + +G + E RK +I D K
Sbjct: 13 RLILAMDLMNRDDALRVTGEVREYIDTVKIGYPLVLSEGMDIIAEFRK-RFGCRIIADFK 71
Query: 62 LYDIPYTMANAALECAKLDIDMLTVHLSSAKSALTALMQRLNALKKRPLIMGVSALTSFS 121
+ DIP T K D + VH ++ A + + + V LT S
Sbjct: 72 VADIPETNEKICRATFKAGADAIIVHGFPGADSVRACLNVAEEMGRE-----VFLLTEMS 126
Query: 122 EEEFLMVYNAPLKTQAIKLSAMGKESGIDGVV--CSVFESLA-IKEALGKDFLTLTPGIR 178
M ++ A +++ MG + G+ V + E L+ ++E +G+D ++PG+
Sbjct: 127 HPGAEMF----IQGAADEIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVG 182
Query: 179 LDQNDKEDQERVANAKEAKQNLSDFIVVGRPIYQAKEPREV---VLELLKD 226
D + R A+A I+VGR IY A P ++E +KD
Sbjct: 183 AQGGDPGETLRFADA----------IIVGRSIYLADNPAAAAAGIIESIKD 223
>pdb|1LOL|A Chain A, Crystal Structure Of Orotidine Monophosphate Decarboxylase
Complex With Xmp
pdb|1LOL|B Chain B, Crystal Structure Of Orotidine Monophosphate Decarboxylase
Complex With Xmp
pdb|1LP6|A Chain A, Crystal Structure Of Orotidine Monophosphate Decarboxylase
Complexed With Cmp
pdb|1LP6|B Chain B, Crystal Structure Of Orotidine Monophosphate Decarboxylase
Complexed With Cmp
Length = 229
Score = 52.8 bits (125), Expect = 3e-08
Identities = 57/231 (24%), Positives = 99/231 (42%), Gaps = 26/231 (11%)
Query: 2 QLCVALDLEKKEDNLSLLQELKGLDLWAKVGLRSFIRDGAVFLDEIRKIDENFKIFLDLK 61
+L +A+DL ++D L + E++ K+G + +G + E RK +I D K
Sbjct: 14 RLILAMDLMNRDDALRVTGEVREYIDTVKIGYPLVLSEGMDIIAEFRK-RFGCRIIADFK 72
Query: 62 LYDIPYTMANAALECAKLDIDMLTVHLSSAKSALTALMQRLNALKKRPLIMGVSALTSFS 121
+ DIP T K D + VH ++ A + + + V LT S
Sbjct: 73 VADIPETNEKICRATFKAGADAIIVHGFPGADSVRACLNVAEEMGRE-----VFLLTEMS 127
Query: 122 EEEFLMVYNAPLKTQAIKLSAMGKESGIDGVV--CSVFESLA-IKEALGKDFLTLTPGIR 178
M ++ A +++ MG + G+ V + E L+ ++E +G+D ++PG+
Sbjct: 128 HPGAEMF----IQGAADEIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVG 183
Query: 179 LDQNDKEDQERVANAKEAKQNLSDFIVVGRPIYQAKEPREV---VLELLKD 226
D + R A+A I+VGR IY A P ++E +KD
Sbjct: 184 AQGGDPGETLRFADA----------IIVGRSIYLADNPAAAAAGIIESIKD 224
>pdb|1DV7|A Chain A, Crystal Structure Of Orotidine Monophosphate Decarboxylase
Length = 227
Score = 52.8 bits (125), Expect = 3e-08
Identities = 57/231 (24%), Positives = 99/231 (42%), Gaps = 26/231 (11%)
Query: 2 QLCVALDLEKKEDNLSLLQELKGLDLWAKVGLRSFIRDGAVFLDEIRKIDENFKIFLDLK 61
+L +A+DL ++D L + E++ K+G + +G + E RK +I D K
Sbjct: 13 RLILAMDLMNRDDALRVTGEVREYIDTVKIGYPLVLSEGMDIIAEFRK-RFGCRIIADFK 71
Query: 62 LYDIPYTMANAALECAKLDIDMLTVHLSSAKSALTALMQRLNALKKRPLIMGVSALTSFS 121
+ DIP T K D + VH ++ A + + + V LT S
Sbjct: 72 VADIPETNEKICRATFKAGADAIIVHGFPGADSVRACLNVAEEMGRE-----VFLLTEMS 126
Query: 122 EEEFLMVYNAPLKTQAIKLSAMGKESGIDGVV--CSVFESLA-IKEALGKDFLTLTPGIR 178
M ++ A +++ MG + G+ V + E L+ ++E +G+D ++PG+
Sbjct: 127 HPGAEMF----IQGAADEIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVG 182
Query: 179 LDQNDKEDQERVANAKEAKQNLSDFIVVGRPIYQAKEPREV---VLELLKD 226
D + R A+A I+VGR IY A P ++E +KD
Sbjct: 183 AQGGDPGETLRFADA----------IIVGRSIYLADNPAAAAAGIIESIKD 223
>pdb|1KM2|A Chain A, Crystal Structure Of Orotidine Monophosphate Mutant Q185a
With 6-Azaump
Length = 247
Score = 52.0 bits (123), Expect = 6e-08
Identities = 57/231 (24%), Positives = 99/231 (42%), Gaps = 26/231 (11%)
Query: 2 QLCVALDLEKKEDNLSLLQELKGLDLWAKVGLRSFIRDGAVFLDEIRKIDENFKIFLDLK 61
+L +A+DL ++D L + E++ K+G + +G + E RK +I D K
Sbjct: 14 RLILAMDLMNRDDALRVTGEVREYIDTVKIGYPLVLSEGMDIIAEFRK-RFGCRIIADFK 72
Query: 62 LYDIPYTMANAALECAKLDIDMLTVHLSSAKSALTALMQRLNALKKRPLIMGVSALTSFS 121
+ DIP T K D + VH ++ A + + + V LT S
Sbjct: 73 VADIPETNEKICRATFKAGADAIIVHGFPGADSVRACLNVAEEMGRE-----VFLLTEMS 127
Query: 122 EEEFLMVYNAPLKTQAIKLSAMGKESGIDGVV--CSVFESLA-IKEALGKDFLTLTPGIR 178
M ++ A +++ MG + G+ V + E L+ ++E +G+D ++PG+
Sbjct: 128 HPGAEMF----IQGAADEIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVG 183
Query: 179 LDQNDKEDQERVANAKEAKQNLSDFIVVGRPIYQAKEPREV---VLELLKD 226
D + R A+A I+VGR IY A P ++E +KD
Sbjct: 184 AAGGDPGETLRFADA----------IIVGRSIYLADNPAAAAAGIIESIKD 224
>pdb|1KM1|A Chain A, Orotidine Monophosphate Decarboxylase Mutant S127a Crystal
Structure
pdb|1KM1|B Chain B, Orotidine Monophosphate Decarboxylase Mutant S127a Crystal
Structure
Length = 247
Score = 51.6 bits (122), Expect = 7e-08
Identities = 54/231 (23%), Positives = 100/231 (42%), Gaps = 26/231 (11%)
Query: 2 QLCVALDLEKKEDNLSLLQELKGLDLWAKVGLRSFIRDGAVFLDEIRKIDENFKIFLDLK 61
+L +A+DL ++D L + E++ K+G + +G + E RK +I D K
Sbjct: 14 RLILAMDLMNRDDALRVTGEVREYIDTVKIGYPLVLSEGMDIIAEFRK-RFGCRIIADFK 72
Query: 62 LYDIPYTMANAALECAKLDIDMLTVHLSSAKSALTALMQRLNALKKRPLIMGVSALTSFS 121
+ DIP T K D + VH ++ A + + + ++ + +
Sbjct: 73 VADIPETNEKICRATFKAGADAIIVHGFPGADSVRACLNVAEEMGREVFLL--TEMAHPG 130
Query: 122 EEEFLMVYNAPLKTQAIKLSAMGKESGIDGVV--CSVFESLA-IKEALGKDFLTLTPGIR 178
E F ++ A +++ MG + G+ V + E L+ ++E +G+D ++PG+
Sbjct: 131 AEMF-------IQGAADEIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVG 183
Query: 179 LDQNDKEDQERVANAKEAKQNLSDFIVVGRPIYQAKEPREV---VLELLKD 226
D + R A+A I+VGR IY A P ++E +KD
Sbjct: 184 AQGGDPGETLRFADA----------IIVGRSIYLADNPAAAAAGIIESIKD 224
>pdb|1KM5|A Chain A, Crystal Structure Of Odcase Mutant D75n Complexed With 6-
Azaump
Length = 247
Score = 50.8 bits (120), Expect = 1e-07
Identities = 56/231 (24%), Positives = 99/231 (42%), Gaps = 26/231 (11%)
Query: 2 QLCVALDLEKKEDNLSLLQELKGLDLWAKVGLRSFIRDGAVFLDEIRKIDENFKIFLDLK 61
+L +A+DL ++D L + E++ K+G + +G + E RK +I D K
Sbjct: 14 RLILAMDLMNRDDALRVTGEVREYIDTVKIGYPLVLSEGMDIIAEFRK-RFGCRIIADFK 72
Query: 62 LYDIPYTMANAALECAKLDIDMLTVHLSSAKSALTALMQRLNALKKRPLIMGVSALTSFS 121
+ +IP T K D + VH ++ A + + + V LT S
Sbjct: 73 VANIPETNEKICRATFKAGADAIIVHGFPGADSVRACLNVAEEMGRE-----VFLLTEMS 127
Query: 122 EEEFLMVYNAPLKTQAIKLSAMGKESGIDGVV--CSVFESLA-IKEALGKDFLTLTPGIR 178
M ++ A +++ MG + G+ V + E L+ ++E +G+D ++PG+
Sbjct: 128 HPGAEMF----IQGAADEIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVG 183
Query: 179 LDQNDKEDQERVANAKEAKQNLSDFIVVGRPIYQAKEPREV---VLELLKD 226
D + R A+A I+VGR IY A P ++E +KD
Sbjct: 184 AQGGDPGETLRFADA----------IIVGRSIYLADNPAAAAAGIIESIKD 224
>pdb|1KM0|A Chain A, Crystal Structure Of Orotidine Monophosphate Decarboxylase
Mutant D70n Complexed With 6-Azaump
pdb|1KM0|B Chain B, Crystal Structure Of Orotidine Monophosphate Decarboxylase
Mutant D70n Complexed With 6-Azaump
pdb|1KM0|C Chain C, Crystal Structure Of Orotidine Monophosphate Decarboxylase
Mutant D70n Complexed With 6-Azaump
pdb|1KM0|D Chain D, Crystal Structure Of Orotidine Monophosphate Decarboxylase
Mutant D70n Complexed With 6-Azaump
Length = 247
Score = 50.8 bits (120), Expect = 1e-07
Identities = 56/231 (24%), Positives = 99/231 (42%), Gaps = 26/231 (11%)
Query: 2 QLCVALDLEKKEDNLSLLQELKGLDLWAKVGLRSFIRDGAVFLDEIRKIDENFKIFLDLK 61
+L +A+DL ++D L + E++ K+G + +G + E RK +I + K
Sbjct: 14 RLILAMDLMNRDDALRVTGEVREYIDTVKIGYPLVLSEGMDIIAEFRK-RFGCRIIANFK 72
Query: 62 LYDIPYTMANAALECAKLDIDMLTVHLSSAKSALTALMQRLNALKKRPLIMGVSALTSFS 121
+ DIP T K D + VH ++ A + + + V LT S
Sbjct: 73 VADIPETNEKICRATFKAGADAIIVHGFPGADSVRACLNVAEEMGRE-----VFLLTEMS 127
Query: 122 EEEFLMVYNAPLKTQAIKLSAMGKESGIDGVV--CSVFESLA-IKEALGKDFLTLTPGIR 178
M ++ A +++ MG + G+ V + E L+ ++E +G+D ++PG+
Sbjct: 128 HPGAEMF----IQGAADEIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVG 183
Query: 179 LDQNDKEDQERVANAKEAKQNLSDFIVVGRPIYQAKEPREV---VLELLKD 226
D + R A+A I+VGR IY A P ++E +KD
Sbjct: 184 AQGGDPGETLRFADA----------IIVGRSIYLADNPAAAAAGIIESIKD 224
>pdb|1KM4|A Chain A, Crystal Structure Of Odcase Mutant K72a Complexed With Ump
Length = 247
Score = 50.4 bits (119), Expect = 2e-07
Identities = 56/231 (24%), Positives = 98/231 (42%), Gaps = 26/231 (11%)
Query: 2 QLCVALDLEKKEDNLSLLQELKGLDLWAKVGLRSFIRDGAVFLDEIRKIDENFKIFLDLK 61
+L +A+DL ++D L + E++ K+G + +G + E RK +I D
Sbjct: 14 RLILAMDLMNRDDALRVTGEVREYIDTVKIGYPLVLSEGMDIIAEFRK-RFGCRIIADFA 72
Query: 62 LYDIPYTMANAALECAKLDIDMLTVHLSSAKSALTALMQRLNALKKRPLIMGVSALTSFS 121
+ DIP T K D + VH ++ A + + + V LT S
Sbjct: 73 VADIPETNEKICRATFKAGADAIIVHGFPGADSVRACLNVAEEMGRE-----VFLLTEMS 127
Query: 122 EEEFLMVYNAPLKTQAIKLSAMGKESGIDGVV--CSVFESLA-IKEALGKDFLTLTPGIR 178
M ++ A +++ MG + G+ V + E L+ ++E +G+D ++PG+
Sbjct: 128 HPGAEMF----IQGAADEIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVG 183
Query: 179 LDQNDKEDQERVANAKEAKQNLSDFIVVGRPIYQAKEPREV---VLELLKD 226
D + R A+A I+VGR IY A P ++E +KD
Sbjct: 184 AQGGDPGETLRFADA----------IIVGRSIYLADNPAAAAAGIIESIKD 224
>pdb|1KM3|A Chain A, Crystal Structure Of Odcase Mutant K42a Complexed With 6-
Azaump
Length = 247
Score = 50.4 bits (119), Expect = 2e-07
Identities = 56/231 (24%), Positives = 98/231 (42%), Gaps = 26/231 (11%)
Query: 2 QLCVALDLEKKEDNLSLLQELKGLDLWAKVGLRSFIRDGAVFLDEIRKIDENFKIFLDLK 61
+L +A+DL ++D L + E++ +G + +G + E RK +I D K
Sbjct: 14 RLILAMDLMNRDDALRVTGEVREYIDTVAIGYPLVLSEGMDIIAEFRK-RFGCRIIADFK 72
Query: 62 LYDIPYTMANAALECAKLDIDMLTVHLSSAKSALTALMQRLNALKKRPLIMGVSALTSFS 121
+ DIP T K D + VH ++ A + + + V LT S
Sbjct: 73 VADIPETNEKICRATFKAGADAIIVHGFPGADSVRACLNVAEEMGRE-----VFLLTEMS 127
Query: 122 EEEFLMVYNAPLKTQAIKLSAMGKESGIDGVV--CSVFESLA-IKEALGKDFLTLTPGIR 178
M ++ A +++ MG + G+ V + E L+ ++E +G+D ++PG+
Sbjct: 128 HPGAEMF----IQGAADEIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVG 183
Query: 179 LDQNDKEDQERVANAKEAKQNLSDFIVVGRPIYQAKEPREV---VLELLKD 226
D + R A+A I+VGR IY A P ++E +KD
Sbjct: 184 AQGGDPGETLRFADA----------IIVGRSIYLADNPAAAAAGIIESIKD 224
>pdb|1KLY|A Chain A, Orotidine Monophosphate Decarboxylase D70g Mutant
Complexed With 6-Azaump
Length = 247
Score = 50.1 bits (118), Expect = 2e-07
Identities = 56/231 (24%), Positives = 98/231 (42%), Gaps = 26/231 (11%)
Query: 2 QLCVALDLEKKEDNLSLLQELKGLDLWAKVGLRSFIRDGAVFLDEIRKIDENFKIFLDLK 61
+L +A+DL ++D L + E++ K+G + +G + E RK +I K
Sbjct: 14 RLILAMDLMNRDDALRVTGEVREYIDTVKIGYPLVLSEGMDIIAEFRK-RFGCRIIAGFK 72
Query: 62 LYDIPYTMANAALECAKLDIDMLTVHLSSAKSALTALMQRLNALKKRPLIMGVSALTSFS 121
+ DIP T K D + VH ++ A + + + V LT S
Sbjct: 73 VADIPETNEKICRATFKAGADAIIVHGFPGADSVRACLNVAEEMGRE-----VFLLTEMS 127
Query: 122 EEEFLMVYNAPLKTQAIKLSAMGKESGIDGVV--CSVFESLA-IKEALGKDFLTLTPGIR 178
M ++ A +++ MG + G+ V + E L+ ++E +G+D ++PG+
Sbjct: 128 HPGAEMF----IQGAADEIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVG 183
Query: 179 LDQNDKEDQERVANAKEAKQNLSDFIVVGRPIYQAKEPREV---VLELLKD 226
D + R A+A I+VGR IY A P ++E +KD
Sbjct: 184 AQGGDPGETLRFADA----------IIVGRSIYLADNPAAAAAGIIESIKD 224
>pdb|1KLZ|A Chain A, Crystal Structure Of Orotidine Monophosphate Decarboxylase
Mutant D70a Complexed With Ump
Length = 247
Score = 49.7 bits (117), Expect = 3e-07
Identities = 56/231 (24%), Positives = 98/231 (42%), Gaps = 26/231 (11%)
Query: 2 QLCVALDLEKKEDNLSLLQELKGLDLWAKVGLRSFIRDGAVFLDEIRKIDENFKIFLDLK 61
+L +A+DL ++D L + E++ K+G + +G + E RK +I K
Sbjct: 14 RLILAMDLMNRDDALRVTGEVREYIDTVKIGYPLVLSEGMDIIAEFRK-RFGCRIIAAFK 72
Query: 62 LYDIPYTMANAALECAKLDIDMLTVHLSSAKSALTALMQRLNALKKRPLIMGVSALTSFS 121
+ DIP T K D + VH ++ A + + + V LT S
Sbjct: 73 VADIPETNEKICRATFKAGADAIIVHGFPGADSVRACLNVAEEMGRE-----VFLLTEMS 127
Query: 122 EEEFLMVYNAPLKTQAIKLSAMGKESGIDGVV--CSVFESLA-IKEALGKDFLTLTPGIR 178
M ++ A +++ MG + G+ V + E L+ ++E +G+D ++PG+
Sbjct: 128 HPGAEMF----IQGAADEIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVG 183
Query: 179 LDQNDKEDQERVANAKEAKQNLSDFIVVGRPIYQAKEPREV---VLELLKD 226
D + R A+A I+VGR IY A P ++E +KD
Sbjct: 184 AQGGDPGETLRFADA----------IIVGRSIYLADNPAAAAAGIIESIKD 224
>pdb|1KM6|A Chain A, Crystal Structure Of Odcase Mutant D70ak72a Complexed With
Omp
Length = 247
Score = 47.4 bits (111), Expect = 1e-06
Identities = 55/231 (23%), Positives = 97/231 (41%), Gaps = 26/231 (11%)
Query: 2 QLCVALDLEKKEDNLSLLQELKGLDLWAKVGLRSFIRDGAVFLDEIRKIDENFKIFLDLK 61
+L +A+DL ++D L + E++ K+G + +G + E RK +I
Sbjct: 14 RLILAMDLMNRDDALRVTGEVREYIDTVKIGYPLVLSEGMDIIAEFRK-RFGCRIIAAFA 72
Query: 62 LYDIPYTMANAALECAKLDIDMLTVHLSSAKSALTALMQRLNALKKRPLIMGVSALTSFS 121
+ DIP T K D + VH ++ A + + + V LT S
Sbjct: 73 VADIPETNEKICRATFKAGADAIIVHGFPGADSVRACLNVAEEMGRE-----VFLLTEMS 127
Query: 122 EEEFLMVYNAPLKTQAIKLSAMGKESGIDGVV--CSVFESLA-IKEALGKDFLTLTPGIR 178
M ++ A +++ MG + G+ V + E L+ ++E +G+D ++PG+
Sbjct: 128 HPGAEMF----IQGAADEIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVG 183
Query: 179 LDQNDKEDQERVANAKEAKQNLSDFIVVGRPIYQAKEPREV---VLELLKD 226
D + R A+A I+VGR IY A P ++E +KD
Sbjct: 184 AQGGDPGETLRFADA----------IIVGRSIYLADNPAAAAAGIIESIKD 224
>pdb|1LOS|A Chain A, Crystal Structure Of Orotidine Monophosphate Decarboxylase
Mutant Deltar203a Complexed With 6-Azaump
pdb|1LOS|B Chain B, Crystal Structure Of Orotidine Monophosphate Decarboxylase
Mutant Deltar203a Complexed With 6-Azaump
pdb|1LOS|C Chain C, Crystal Structure Of Orotidine Monophosphate Decarboxylase
Mutant Deltar203a Complexed With 6-Azaump
pdb|1LOS|D Chain D, Crystal Structure Of Orotidine Monophosphate Decarboxylase
Mutant Deltar203a Complexed With 6-Azaump
Length = 224
Score = 46.6 bits (109), Expect = 2e-06
Identities = 56/231 (24%), Positives = 98/231 (42%), Gaps = 30/231 (12%)
Query: 2 QLCVALDLEKKEDNLSLLQELKGLDLWAKVGLRSFIRDGAVFLDEIRKIDENFKIFLDLK 61
+L +A+DL ++D L + E++ K+G + +G + E RK +I D K
Sbjct: 14 RLILAMDLMNRDDALRVTGEVREYIDTVKIGYPLVLSEGMDIIAEFRK-RFGCRIIADFK 72
Query: 62 LYDIPYTMANAALECAKLDIDMLTVHLSSAKSALTALMQRLNALKKRPLIMGVSALTSFS 121
+ DIP T K D + VH ++ A + + + V LT S
Sbjct: 73 VADIPETNEKICRATFKAGADAIIVHGFPGADSVRACLNVAEEMGRE-----VFLLTEMS 127
Query: 122 EEEFLMVYNAPLKTQAIKLSAMGKESGIDGVV--CSVFESLA-IKEALGKDFLTLTPGIR 178
M ++ A +++ MG + G+ V + E L+ ++E +G+D ++PG+
Sbjct: 128 HPGAEMF----IQGAADEIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGV- 182
Query: 179 LDQNDKEDQERVANAKEAKQNLSDFIVVGRPIYQAKEPREV---VLELLKD 226
D + R A+A I+VG IY A P ++E +KD
Sbjct: 183 ---GDPGETLRFADA----------IIVGASIYLADNPAAAAAGIIESIKD 220
>pdb|1DQW|A Chain A, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
pdb|1DQW|B Chain B, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
pdb|1DQW|C Chain C, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
pdb|1DQW|D Chain D, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
pdb|1DQX|A Chain A, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
Complexed To 6-Hydroxyuridine 5'-Phosphate (Bmp)
pdb|1DQX|B Chain B, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
Complexed To 6-Hydroxyuridine 5'-Phosphate (Bmp)
pdb|1DQX|C Chain C, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
Complexed To 6-Hydroxyuridine 5'-Phosphate (Bmp)
pdb|1DQX|D Chain D, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
Complexed To 6-Hydroxyuridine 5'-Phosphate (Bmp)
Length = 267
Score = 34.7 bits (78), Expect = 0.009
Identities = 50/215 (23%), Positives = 81/215 (37%), Gaps = 14/215 (6%)
Query: 3 LCVALDLEKKEDNLSLLQELKGLDLWAKVG---LRSFIRDGAVFLDEIRKIDENFKIFLD 59
LC +LD+ ++ L L++ L K L F +G V + NF +F D
Sbjct: 32 LCASLDVRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALSAKYNFLLFED 91
Query: 60 LKLYDIPYTMA---NAALECAKLDIDMLTVHLSSAKSALTALMQRLNALKKRPLIMGVSA 116
K DI T+ +A + D+ H ++ L Q + K P G+
Sbjct: 92 RKFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQAAEEVTKEP--RGLLM 149
Query: 117 LTSFSEEEFLMVYNAPLKTQAIKLSAMGKESGIDGVVCSVFESLAIKEALGKDFLTLTPG 176
L S + L T I +S D V+ + + G D+L +TPG
Sbjct: 150 LAELSCKGSLSTGEYTKGTVDIA------KSDKDFVIGFIAQRDMGGRDEGYDWLIMTPG 203
Query: 177 IRLDQNDKEDQERVANAKEAKQNLSDFIVVGRPIY 211
+ LD ++ + SD I+VGR ++
Sbjct: 204 VGLDDKGDALGQQYRTVDDVVSTGSDIIIVGRGLF 238
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.137 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,132,905
Number of Sequences: 13198
Number of extensions: 41642
Number of successful extensions: 135
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 88
Number of HSP's gapped (non-prelim): 19
length of query: 227
length of database: 2,899,336
effective HSP length: 85
effective length of query: 142
effective length of database: 1,777,506
effective search space: 252405852
effective search space used: 252405852
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)