BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645133|ref|NP_207303.1| conserved hypothetical
secreted protein [Helicobacter pylori 26695]
(403 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1JMJ|A Chain A, Crystal Structure Of Native Heparin Cof... 32 0.17
pdb|1JMO|A Chain A, Crystal Structure Of The Heparin Cofact... 32 0.17
pdb|1JXK|A Chain A, Role Of Ethe Mobile Loop In The Mehanis... 31 0.22
pdb|1JXJ|A Chain A, Role Of Mobile Loop In The Mechanism Of... 28 2.4
pdb|1SMD| Human Salivary Amylase >gi|14719766|pdb|1C8Q|A ... 28 2.4
pdb|1D5R|A Chain A, Crystal Structure Of The Pten Tumor Sup... 27 3.2
pdb|1BVN|P Chain P, Pig Pancreatic Alpha-Amylase In Complex... 27 4.1
pdb|1PIG| Pig Pancreatic Alpha-Amylase Complexed With The... 27 4.1
pdb|1DHK|A Chain A, Structure Of Porcine Pancreatic Alpha-A... 27 4.1
pdb|1OSE| Porcine Pancreatic Alpha-Amylase Complexed With... 27 4.1
pdb|1PPI| Alpha Amylase (Ppa) (E.C.3.2.1.1) Complexed Wit... 27 4.1
pdb|3CPU|A Chain A, Subsite Mapping Of The Active Site Of H... 27 4.1
pdb|1JFH| Structure Of A Pancreatic Alpha-Amylase Bound T... 27 5.4
pdb|1KB3|A Chain A, Three Dimensional Structure Analysis Of... 27 5.4
pdb|1KBK|A Chain A, Mechanistic Analyses Of Catalysis In Hu... 27 5.4
pdb|1B2Y|A Chain A, Structure Of Human Pancreatic Alpha-Amy... 27 5.4
pdb|1HNY| Mol_id: 1; Molecule: Human Pancreatic Alpha-Amy... 27 5.4
pdb|1HX0|A Chain A, Structure Of Pig Pancreatic Alpha-Amyla... 27 5.4
pdb|1KXQ|A Chain A, Camelid Vhh Domain In Complex With Porc... 27 5.4
pdb|1KGX|A Chain A, Three Dimensional Structure Analysis Of... 27 5.4
>pdb|1JMJ|A Chain A, Crystal Structure Of Native Heparin Cofactor Ii
pdb|1JMJ|B Chain B, Crystal Structure Of Native Heparin Cofactor Ii
Length = 480
Score = 31.6 bits (70), Expect = 0.17
Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 11/124 (8%)
Query: 86 YTLRDANNTLIQALIPISQDLQIHI--YKKGEDYFLDFIPIIFTRKEKTLLLSLQTSPYQ 143
YTLR N+ IQ PI D + + Y E DF F K ++ L +
Sbjct: 197 YTLRSVNDLYIQKQFPILLDFKTKVREYYFAEAQIADFSDPAFISKTNNHIMKLTKGLIK 256
Query: 144 DIIKATNDPLLANQLMNAYKKSVPFK-RLVKNDKIAIVYTRDYRVGQAFGQPTIKMAMVS 202
D ++ DP ++N + FK V + + + ++R+ + + +K++M+
Sbjct: 257 DALE-NIDPATQMMILNC----IYFKGSWVNKFPVEMTHNHNFRLNE---REVVKVSMMQ 308
Query: 203 SRSN 206
++ N
Sbjct: 309 TKGN 312
>pdb|1JMO|A Chain A, Crystal Structure Of The Heparin Cofactor Ii-S195a
Thrombin Complex
Length = 480
Score = 31.6 bits (70), Expect = 0.17
Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 11/124 (8%)
Query: 86 YTLRDANNTLIQALIPISQDLQIHI--YKKGEDYFLDFIPIIFTRKEKTLLLSLQTSPYQ 143
YTLR N+ IQ PI D + + Y E DF F K ++ L +
Sbjct: 197 YTLRSVNDLYIQKQFPILLDFKTKVREYYFAEAQIADFSDPAFISKTNNHIMKLTKGLIK 256
Query: 144 DIIKATNDPLLANQLMNAYKKSVPFK-RLVKNDKIAIVYTRDYRVGQAFGQPTIKMAMVS 202
D ++ DP ++N + FK V + + + ++R+ + + +K++M+
Sbjct: 257 DALE-NIDPATQMMILNC----IYFKGSWVNKFPVEMTHNHNFRLNE---REVVKVSMMQ 308
Query: 203 SRSN 206
++ N
Sbjct: 309 TKGN 312
>pdb|1JXK|A Chain A, Role Of Ethe Mobile Loop In The Mehanism Of Human Salivary
Amylase
Length = 491
Score = 31.2 bits (69), Expect = 0.22
Identities = 25/117 (21%), Positives = 54/117 (45%), Gaps = 14/117 (11%)
Query: 142 YQDIIKATNDPL-----LANQLMNAYKKSVPFKRLVKN---DKIAIVYTRDYRVGQAFGQ 193
YQ++I +P+ N + +K +++ +K++ Y +++ G F
Sbjct: 231 YQEVIDLGGEPIKSSDYFGNGRVTEFKYGAKLGTVIRKWNGEKMS--YLKNWGEGWGFMP 288
Query: 194 PTIKMAMVSSRSNQYYLFSHSNGHYYDSKAQEVA-GFLLETPVKYTRISSPFSYGRF 249
+ V + NQ HS ++D++ ++A GF+L P +TR+ S + + R+
Sbjct: 289 SDRALVFVDNHDNQR---GHSILTFWDARLYKMAVGFMLAHPYGFTRVMSSYRWPRY 342
>pdb|1JXJ|A Chain A, Role Of Mobile Loop In The Mechanism Of Human Salivary
Amylase
Length = 496
Score = 27.7 bits (60), Expect = 2.4
Identities = 25/122 (20%), Positives = 54/122 (43%), Gaps = 19/122 (15%)
Query: 142 YQDIIKATNDPL-----LANQLMNAYKKSVPFKRLVKN---DKIAIVYTRDYRVGQAFGQ 193
YQ++I +P+ N + +K +++ +K++ Y +++ G F
Sbjct: 231 YQEVIDLGGEPIKSSDYFGNGRVTEFKYGAKLGTVIRKWNGEKMS--YLKNWGEGWGFMP 288
Query: 194 PTIKMAMVSSRSNQYYLFSHSNGH-----YYDSKAQEVA-GFLLETPVKYTRISSPFSYG 247
+ V + NQ H G ++D++ ++A GF+L P +TR+ S + +
Sbjct: 289 SDRALVFVDNHDNQR---GHGAGGASILTFWDARLYKMAVGFMLAHPYGFTRVMSSYRWP 345
Query: 248 RF 249
R+
Sbjct: 346 RY 347
>pdb|1SMD| Human Salivary Amylase
pdb|1C8Q|A Chain A, Structure Solution And Refinement Of The Recombinant Human
Salivary Amylase
Length = 496
Score = 27.7 bits (60), Expect = 2.4
Identities = 25/122 (20%), Positives = 54/122 (43%), Gaps = 19/122 (15%)
Query: 142 YQDIIKATNDPL-----LANQLMNAYKKSVPFKRLVKN---DKIAIVYTRDYRVGQAFGQ 193
YQ++I +P+ N + +K +++ +K++ Y +++ G F
Sbjct: 231 YQEVIDLGGEPIKSSDYFGNGRVTEFKYGAKLGTVIRKWNGEKMS--YLKNWGEGWGFMP 288
Query: 194 PTIKMAMVSSRSNQYYLFSHSNGH-----YYDSKAQEVA-GFLLETPVKYTRISSPFSYG 247
+ V + NQ H G ++D++ ++A GF+L P +TR+ S + +
Sbjct: 289 SDRALVFVDNHDNQR---GHGAGGASILTFWDARLYKMAVGFMLAHPYGFTRVMSSYRWP 345
Query: 248 RF 249
R+
Sbjct: 346 RY 347
>pdb|1D5R|A Chain A, Crystal Structure Of The Pten Tumor Suppressor
Length = 324
Score = 27.3 bits (59), Expect = 3.2
Identities = 14/53 (26%), Positives = 23/53 (42%)
Query: 54 FLEKNHIPQKLYYNLSSQDKELSAEIQSNVTYYTLRDANNTLIQALIPISQDL 106
FL+ H YNL ++ +A+ V Y D N ++ + P +DL
Sbjct: 50 FLDSKHKNHYKIYNLCAERHYDTAKFNCRVAQYPFEDHNPPQLELIKPFCEDL 102
>pdb|1BVN|P Chain P, Pig Pancreatic Alpha-Amylase In Complex With The
Proteinaceous Inhibitor Tendamistat
Length = 496
Score = 26.9 bits (58), Expect = 4.1
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 181 YTRDYRVGQAFGQPTIKMAMVSSRSNQYYLFSHSNGH-----YYDSKAQEVA-GFLLETP 234
Y +++ G F + V + NQ H G ++D++ +VA GF+L P
Sbjct: 276 YLKNWGEGWGFMPSDRALVFVDNHDNQR---GHGAGGSSILTFWDARLYKVAVGFMLAHP 332
Query: 235 VKYTRISSPFSYGR 248
+TR+ S + + R
Sbjct: 333 YGFTRVMSSYRWAR 346
>pdb|1PIG| Pig Pancreatic Alpha-Amylase Complexed With The Oligosaccharide
V-1532
pdb|1PIF| Pig Alpha-Amylase
Length = 496
Score = 26.9 bits (58), Expect = 4.1
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 181 YTRDYRVGQAFGQPTIKMAMVSSRSNQYYLFSHSNGH-----YYDSKAQEVA-GFLLETP 234
Y +++ G F + V + NQ H G ++D++ +VA GF+L P
Sbjct: 276 YLKNWGEGWGFMPSDRALVFVDNHDNQR---GHGAGGSSILTFWDARLYKVAVGFMLAHP 332
Query: 235 VKYTRISSPFSYGR 248
+TR+ S + + R
Sbjct: 333 YGFTRVMSSYRWAR 346
>pdb|1DHK|A Chain A, Structure Of Porcine Pancreatic Alpha-Amylase
Length = 496
Score = 26.9 bits (58), Expect = 4.1
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 181 YTRDYRVGQAFGQPTIKMAMVSSRSNQYYLFSHSNGH-----YYDSKAQEVA-GFLLETP 234
Y +++ G F + V + NQ H G ++D++ +VA GF+L P
Sbjct: 276 YLKNWGEGWGFMPSDRALVFVDNHDNQR---GHGAGGASILTFWDARLYKVAVGFMLAHP 332
Query: 235 VKYTRISSPFSYGR 248
+TR+ S + + R
Sbjct: 333 YGFTRVMSSYRWAR 346
>pdb|1OSE| Porcine Pancreatic Alpha-Amylase Complexed With Acarbose
Length = 496
Score = 26.9 bits (58), Expect = 4.1
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 181 YTRDYRVGQAFGQPTIKMAMVSSRSNQYYLFSHSNGH-----YYDSKAQEVA-GFLLETP 234
Y +++ G F + V + NQ H G ++D++ +VA GF+L P
Sbjct: 276 YLKNWGEGWGFMPSDRALVFVDNHDNQR---GHGAGGASILTFWDARLYKVAVGFMLAHP 332
Query: 235 VKYTRISSPFSYGR 248
+TR+ S + + R
Sbjct: 333 YGFTRVMSSYRWAR 346
>pdb|1PPI| Alpha Amylase (Ppa) (E.C.3.2.1.1) Complexed With Acarbose
Length = 496
Score = 26.9 bits (58), Expect = 4.1
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 181 YTRDYRVGQAFGQPTIKMAMVSSRSNQYYLFSHSNGH-----YYDSKAQEVA-GFLLETP 234
Y +++ G F + V + NQ H G ++D++ +VA GF+L P
Sbjct: 276 YLKNWGEGWGFMPSDRALVFVDNHDNQR---GHGAGGSSILTFWDARLYKVAVGFMLAHP 332
Query: 235 VKYTRISSPFSYGR 248
+TR+ S + + R
Sbjct: 333 YGFTRVMSSYRWAR 346
>pdb|3CPU|A Chain A, Subsite Mapping Of The Active Site Of Human Pancreatic
Alpha-Amylase Using Substrates, The Pharmacological
Inhibitor Acarbose, And An Active Site Variant
pdb|2CPU|A Chain A, Subsite Mapping Of The Active Site Of Human Pancreatic
Alpha-Amylase Using Substrates, The Pharmacological
Inhibitor Acarbose, And An Active Site Variant
Length = 496
Score = 26.9 bits (58), Expect = 4.1
Identities = 25/121 (20%), Positives = 54/121 (43%), Gaps = 19/121 (15%)
Query: 142 YQDIIKATNDPL-----LANQLMNAYKKSVPFKRLVKN---DKIAIVYTRDYRVGQAFGQ 193
YQ++I +P+ N + +K +++ +K++ Y +++ G F
Sbjct: 231 YQEVIDLGGEPIKSSDYFGNGRVTEFKYGAKLGTVIRKWNGEKMS--YLKNWGEGWGFVP 288
Query: 194 PTIKMAMVSSRSNQYYLFSHSNGH-----YYDSKAQEVA-GFLLETPVKYTRISSPFSYG 247
+ V + +NQ H G ++D++ ++A GF+L P +TR+ S + +
Sbjct: 289 SDRALVFVDNHNNQR---GHGAGGASILTFWDARLYKMAVGFMLAHPYGFTRVMSSYRWP 345
Query: 248 R 248
R
Sbjct: 346 R 346
>pdb|1JFH| Structure Of A Pancreatic Alpha-Amylase Bound To A Substrate
Analogue At 2.03 Angstrom Resolution
Length = 496
Score = 26.6 bits (57), Expect = 5.4
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 181 YTRDYRVGQAFGQPTIKMAMVSSRSNQYYLFSHSNGH-----YYDSKAQEVA-GFLLETP 234
Y +++ G F + V + NQ H G ++D++ ++A GF+L P
Sbjct: 276 YLKNWGEGWGFMPSDRALVFVDNHDNQR---GHGAGGSSILTFWDARLYKIAVGFMLAHP 332
Query: 235 VKYTRISSPFSYGR 248
+TR+ S + + R
Sbjct: 333 YGFTRVMSSYRWAR 346
>pdb|1KB3|A Chain A, Three Dimensional Structure Analysis Of The R195a Variant
Of Human Pancreatic Alpha Amylase
Length = 496
Score = 26.6 bits (57), Expect = 5.4
Identities = 25/121 (20%), Positives = 53/121 (43%), Gaps = 19/121 (15%)
Query: 142 YQDIIKATNDPL-----LANQLMNAYKKSVPFKRLVKN---DKIAIVYTRDYRVGQAFGQ 193
YQ++I +P+ N + +K +++ +K++ Y +++ G F
Sbjct: 231 YQEVIDLGGEPIKSSDYFGNGRVTEFKYGAKLGTVIRKWNGEKMS--YLKNWGEGWGFVP 288
Query: 194 PTIKMAMVSSRSNQYYLFSHSNGH-----YYDSKAQEVA-GFLLETPVKYTRISSPFSYG 247
+ V + NQ H G ++D++ ++A GF+L P +TR+ S + +
Sbjct: 289 SDRALVFVDNHDNQR---GHGAGGASILTFWDARLYKMAVGFMLAHPYGFTRVMSSYRWP 345
Query: 248 R 248
R
Sbjct: 346 R 346
>pdb|1KBK|A Chain A, Mechanistic Analyses Of Catalysis In Human Pancreatic
Alpha- Amylase: Detailed Kinetic And Structural Studies
Of Mutants Of Three Conserved Carboxylic Acids
Length = 496
Score = 26.6 bits (57), Expect = 5.4
Identities = 25/121 (20%), Positives = 53/121 (43%), Gaps = 19/121 (15%)
Query: 142 YQDIIKATNDPL-----LANQLMNAYKKSVPFKRLVKN---DKIAIVYTRDYRVGQAFGQ 193
YQ++I +P+ N + +K +++ +K++ Y +++ G F
Sbjct: 231 YQEVIDLGGEPIKSSDYFGNGRVTEFKYGAKLGTVIRKWNGEKMS--YLKNWGEGWGFVP 288
Query: 194 PTIKMAMVSSRSNQYYLFSHSNGH-----YYDSKAQEVA-GFLLETPVKYTRISSPFSYG 247
+ V + NQ H G ++D++ ++A GF+L P +TR+ S + +
Sbjct: 289 SDRALVFVDNHDNQR---GHGAGGASILTFWDARLYKMAVGFMLAHPYGFTRVMSSYRWP 345
Query: 248 R 248
R
Sbjct: 346 R 346
>pdb|1B2Y|A Chain A, Structure Of Human Pancreatic Alpha-Amylase In Complex
With The Carbohydrate Inhibitor Acarbose
Length = 496
Score = 26.6 bits (57), Expect = 5.4
Identities = 25/121 (20%), Positives = 53/121 (43%), Gaps = 19/121 (15%)
Query: 142 YQDIIKATNDPL-----LANQLMNAYKKSVPFKRLVKN---DKIAIVYTRDYRVGQAFGQ 193
YQ++I +P+ N + +K +++ +K++ Y +++ G F
Sbjct: 231 YQEVIDLGGEPIKSSDYFGNGRVTEFKYGAKLGTVIRKWNGEKMS--YLKNWGEGWGFVP 288
Query: 194 PTIKMAMVSSRSNQYYLFSHSNGH-----YYDSKAQEVA-GFLLETPVKYTRISSPFSYG 247
+ V + NQ H G ++D++ ++A GF+L P +TR+ S + +
Sbjct: 289 SDRALVFVDNHDNQR---GHGAGGASILTFWDARLYKMAVGFMLAHPYGFTRVMSSYRWP 345
Query: 248 R 248
R
Sbjct: 346 R 346
>pdb|1HNY| Mol_id: 1; Molecule: Human Pancreatic Alpha-Amylase; Chain: Null;
Ec: 3.2.1.1
pdb|1CPU|A Chain A, Subsite Mapping Of The Active Site Of Human Pancreatic
Alpha-Amylase Using Substrates, The Pharmacological
Inhibitor Acarbose, And An Active Site Variant
pdb|1BSI| Human Pancreatic Alpha-Amylase From Pichia Pastoris, Glycosylated
Protein
Length = 496
Score = 26.6 bits (57), Expect = 5.4
Identities = 25/121 (20%), Positives = 53/121 (43%), Gaps = 19/121 (15%)
Query: 142 YQDIIKATNDPL-----LANQLMNAYKKSVPFKRLVKN---DKIAIVYTRDYRVGQAFGQ 193
YQ++I +P+ N + +K +++ +K++ Y +++ G F
Sbjct: 231 YQEVIDLGGEPIKSSDYFGNGRVTEFKYGAKLGTVIRKWNGEKMS--YLKNWGEGWGFVP 288
Query: 194 PTIKMAMVSSRSNQYYLFSHSNGH-----YYDSKAQEVA-GFLLETPVKYTRISSPFSYG 247
+ V + NQ H G ++D++ ++A GF+L P +TR+ S + +
Sbjct: 289 SDRALVFVDNHDNQR---GHGAGGASILTFWDARLYKMAVGFMLAHPYGFTRVMSSYRWP 345
Query: 248 R 248
R
Sbjct: 346 R 346
>pdb|1HX0|A Chain A, Structure Of Pig Pancreatic Alpha-Amylase Complexed With
The "truncate" Acarbose Molecule (Pseudotrisaccharide)
Length = 496
Score = 26.6 bits (57), Expect = 5.4
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 181 YTRDYRVGQAFGQPTIKMAMVSSRSNQYYLFSHSNGH-----YYDSKAQEVA-GFLLETP 234
Y +++ G F + V + NQ H G ++D++ ++A GF+L P
Sbjct: 276 YLKNWGEGWGFMPSDRALVFVDNHDNQR---GHGAGGSSILTFWDARLYKIAVGFMLAHP 332
Query: 235 VKYTRISSPFSYGR 248
+TR+ S + + R
Sbjct: 333 YGFTRVMSSYRWAR 346
>pdb|1KXQ|A Chain A, Camelid Vhh Domain In Complex With Porcine Pancreatic
Alpha- Amylase
pdb|1KXQ|B Chain B, Camelid Vhh Domain In Complex With Porcine Pancreatic
Alpha- Amylase
pdb|1KXQ|C Chain C, Camelid Vhh Domain In Complex With Porcine Pancreatic
Alpha- Amylase
pdb|1KXQ|D Chain D, Camelid Vhh Domain In Complex With Porcine Pancreatic
Alpha- Amylase
pdb|1KXT|A Chain A, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
pdb|1KXT|C Chain C, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
pdb|1KXT|E Chain E, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
pdb|1KXV|A Chain A, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
pdb|1KXV|B Chain B, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
Length = 496
Score = 26.6 bits (57), Expect = 5.4
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 181 YTRDYRVGQAFGQPTIKMAMVSSRSNQYYLFSHSNGH-----YYDSKAQEVA-GFLLETP 234
Y +++ G F + V + NQ H G ++D++ ++A GF+L P
Sbjct: 276 YLKNWGEGWGFMPSDRALVFVDNHDNQR---GHGAGGSSILTFWDARLYKIAVGFMLAHP 332
Query: 235 VKYTRISSPFSYGR 248
+TR+ S + + R
Sbjct: 333 YGFTRVMSSYRWAR 346
>pdb|1KGX|A Chain A, Three Dimensional Structure Analysis Of The R195q Variant
Of Human Pancreatic Alpha Amylase
Length = 496
Score = 26.6 bits (57), Expect = 5.4
Identities = 25/121 (20%), Positives = 53/121 (43%), Gaps = 19/121 (15%)
Query: 142 YQDIIKATNDPL-----LANQLMNAYKKSVPFKRLVKN---DKIAIVYTRDYRVGQAFGQ 193
YQ++I +P+ N + +K +++ +K++ Y +++ G F
Sbjct: 231 YQEVIDLGGEPIKSSDYFGNGRVTEFKYGAKLGTVIRKWNGEKMS--YLKNWGEGWGFVP 288
Query: 194 PTIKMAMVSSRSNQYYLFSHSNGH-----YYDSKAQEVA-GFLLETPVKYTRISSPFSYG 247
+ V + NQ H G ++D++ ++A GF+L P +TR+ S + +
Sbjct: 289 SDRALVFVDNHDNQR---GHGAGGASILTFWDARLYKMAVGFMLAHPYGFTRVMSSYRWP 345
Query: 248 R 248
R
Sbjct: 346 R 346
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.321 0.138 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,276,406
Number of Sequences: 13198
Number of extensions: 93849
Number of successful extensions: 458
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 457
Number of HSP's gapped (non-prelim): 20
length of query: 403
length of database: 2,899,336
effective HSP length: 90
effective length of query: 313
effective length of database: 1,711,516
effective search space: 535704508
effective search space used: 535704508
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)