BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645134|ref|NP_207304.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(212 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1KHZ|A Chain A, Structure Of The Adpr-Ase In Complex Wi... 36 0.003
pdb|1E5U|I Chain I, Nmr Representative Structure Of Intimin... 26 3.0
pdb|1F00|I Chain I, Crystal Structure Of C-Terminal 282-Res... 26 3.0
pdb|1F4Q|B Chain B, Crystal Structure Of Apo Grancalcin >gi... 26 3.9
pdb|1K94|A Chain A, Crystal Structure Of Des(1-52)grancalci... 26 3.9
pdb|1QMF|A Chain A, Penicillin-Binding Protein 2x (Pbp-2x) ... 25 6.7
pdb|1PMD| Penicillin-Binding Protein 2x (Pbp-2x) 25 6.7
pdb|1K25|B Chain B, Pbp2x From A Highly Penicillin-Resistan... 25 6.7
pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antig... 25 8.8
pdb|1EUU| Sialidase Or Neuraminidase, Large 68kd Form >gi... 25 8.8
>pdb|1KHZ|A Chain A, Structure Of The Adpr-Ase In Complex With Ampcpr And Mg
pdb|1KHZ|B Chain B, Structure Of The Adpr-Ase In Complex With Ampcpr And Mg
pdb|1G9Q|A Chain A, Complex Structure Of The Adpr-Ase And Its Substrate Adp-
Ribose
pdb|1GA7|A Chain A, Crystal Structure Of The Adp-Ribose Pyrophosphatase In
Complex With Gd+3
pdb|1G0S|B Chain B, The Crystal Structure Of The E.Coli Adp-Ribose
Pyrophosphatase
pdb|1G9Q|B Chain B, Complex Structure Of The Adpr-Ase And Its Substrate Adp-
Ribose
pdb|1GA7|B Chain B, Crystal Structure Of The Adp-Ribose Pyrophosphatase In
Complex With Gd+3
pdb|1G0S|A Chain A, The Crystal Structure Of The E.Coli Adp-Ribose
Pyrophosphatase
Length = 209
Score = 36.2 bits (82), Expect = 0.003
Identities = 39/161 (24%), Positives = 74/161 (45%), Gaps = 19/161 (11%)
Query: 56 AVLL-YEKESDCFVIVKQFRPAIYARRFHFKCDQDQTIDGYTYELCAGLVDKANKSLEEI 114
AVLL ++ D V+++Q R A Y D + + E+ AG++++ +S+E++
Sbjct: 60 AVLLPFDPVRDEVVLIEQIRIAAY----------DTSETPWLLEMVAGMIEEG-ESVEDV 108
Query: 115 ACEEALEECGYQISPKNLETIGQFYSATGLSGSLQTLYYAEVHKNLKVSKGGGID-TERI 173
A EA+EE G + K + + F ++ G + ++ EV G D E I
Sbjct: 109 ARREAIEEAGLIV--KRTKPVLSFLASPGGTSERSSIMVGEVDATTASGIHGLADENEDI 166
Query: 174 EVLFLERSKALDFIMDFQYAKTTGLSLAILW---HLKKFKN 211
V + R +A ++ + + + +A+ W H + KN
Sbjct: 167 RVHVVSREQAYQWVEEGKIDNAASV-IALQWLQLHHQALKN 206
>pdb|1E5U|I Chain I, Nmr Representative Structure Of Intimin-190 (Int190) From
Enteropathogenic E. Coli
Length = 187
Score = 26.2 bits (56), Expect = 3.0
Identities = 17/46 (36%), Positives = 22/46 (46%), Gaps = 5/46 (10%)
Query: 127 ISPKNLETIGQFYSATGLSGSLQTLYYAEVHKNLKVSKGGGIDTER 172
I N+E +G TG+ G L T++ NLK S G G T R
Sbjct: 4 IDDGNIEIVG-----TGVKGKLPTVWLQYGQVNLKASGGNGKYTWR 44
>pdb|1F00|I Chain I, Crystal Structure Of C-Terminal 282-Residue Fragment Of
Enteropathogenic E. Coli Intimin
pdb|1F02|I Chain I, Crystal Structure Of C-Terminal 282-Residue Fragment Of
Intimin In Complex With Translocated Intimin Receptor
(Tir) Intimin-Binding Domain
Length = 282
Score = 26.2 bits (56), Expect = 3.0
Identities = 17/46 (36%), Positives = 22/46 (46%), Gaps = 5/46 (10%)
Query: 127 ISPKNLETIGQFYSATGLSGSLQTLYYAEVHKNLKVSKGGGIDTER 172
I N+E +G TG+ G L T++ NLK S G G T R
Sbjct: 99 IDDGNIEIVG-----TGVKGKLPTVWLQYGQVNLKASGGNGKYTWR 139
>pdb|1F4Q|B Chain B, Crystal Structure Of Apo Grancalcin
pdb|1F4O|A Chain A, Crystal Structure Of Grancalcin With Bound Calcium
pdb|1F4O|B Chain B, Crystal Structure Of Grancalcin With Bound Calcium
pdb|1F4Q|A Chain A, Crystal Structure Of Apo Grancalcin
Length = 165
Score = 25.8 bits (55), Expect = 3.9
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 110 SLEEIACEEALEECGYQISPKNLETIGQFYSATG 143
++E +A+ GY++SP+ L TI + YS G
Sbjct: 86 TVEHHELRQAIGLMGYRLSPQTLTTIVKRYSKNG 119
>pdb|1K94|A Chain A, Crystal Structure Of Des(1-52)grancalcin With Bound
Calcium
pdb|1K94|B Chain B, Crystal Structure Of Des(1-52)grancalcin With Bound
Calcium
pdb|1K95|A Chain A, Crystal Structure Of Des(1-52)grancalcin With Bound
Calcium
Length = 165
Score = 25.8 bits (55), Expect = 3.9
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 110 SLEEIACEEALEECGYQISPKNLETIGQFYSATG 143
++E +A+ GY++SP+ L TI + YS G
Sbjct: 86 TVEHHELRQAIGLMGYRLSPQTLTTIVKRYSKNG 119
>pdb|1QMF|A Chain A, Penicillin-Binding Protein 2x (Pbp-2x) Acyl-Enzyme Complex
pdb|1QME|A Chain A, Penicillin-Binding Protein 2x (Pbp-2x)
Length = 702
Score = 25.0 bits (53), Expect = 6.7
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 8/46 (17%)
Query: 26 SSNFIELKRMHYNEENTKK---TWDIIKSLDSV-----AVLLYEKE 63
+S+FI L ++H NE+ +K T + SL+S+ ++ YEK+
Sbjct: 146 ASSFIGLAQLHENEDGSKSLLGTSGMESSLNSILAGTDGIITYEKD 191
>pdb|1PMD| Penicillin-Binding Protein 2x (Pbp-2x)
Length = 675
Score = 25.0 bits (53), Expect = 6.7
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 8/46 (17%)
Query: 26 SSNFIELKRMHYNEENTKK---TWDIIKSLDSV-----AVLLYEKE 63
+S+FI L ++H NE+ +K T + SL+S+ ++ YEK+
Sbjct: 119 ASSFIGLAQLHENEDGSKSLLGTSGMESSLNSILAGTDGIITYEKD 164
>pdb|1K25|B Chain B, Pbp2x From A Highly Penicillin-Resistant Streptococcus
Pneumoniae Clinical Isolate
pdb|1K25|D Chain D, Pbp2x From A Highly Penicillin-Resistant Streptococcus
Pneumoniae Clinical Isolate
pdb|1K25|A Chain A, Pbp2x From A Highly Penicillin-Resistant Streptococcus
Pneumoniae Clinical Isolate
pdb|1K25|C Chain C, Pbp2x From A Highly Penicillin-Resistant Streptococcus
Pneumoniae Clinical Isolate
Length = 685
Score = 25.0 bits (53), Expect = 6.7
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 8/46 (17%)
Query: 26 SSNFIELKRMHYNEENTKK---TWDIIKSLDSV-----AVLLYEKE 63
+S+FI L ++H NE+ +K T + SL+S+ ++ YEK+
Sbjct: 129 ASSFIGLAQLHENEDGSKSLLGTSGMESSLNSILAGTDGIITYEKD 174
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
Length = 460
Score = 24.6 bits (52), Expect = 8.8
Identities = 16/52 (30%), Positives = 26/52 (49%), Gaps = 5/52 (9%)
Query: 18 SVYLEPCSSSNFIELKRMHYNEENTKKTWDIIKSLDSVAVLLYEKESDCFVI 69
S+ +E C + IE + H NE K + ++I+ SV E+E D V+
Sbjct: 392 SIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSV-----EEEEDQNVV 438
>pdb|1EUU| Sialidase Or Neuraminidase, Large 68kd Form
pdb|1EUT| Sialidase, Large 68kd Form, Complexed With Galactose
Length = 605
Score = 24.6 bits (52), Expect = 8.8
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 96 TYELCAGLVDKANKSLEEIACEEALEECG 124
T+ + GL+D+A S+ ++ EE E G
Sbjct: 454 TFTVTVGLLDQARMSIADVDSEETAREDG 482
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.135 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,169,837
Number of Sequences: 13198
Number of extensions: 44652
Number of successful extensions: 84
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 81
Number of HSP's gapped (non-prelim): 10
length of query: 212
length of database: 2,899,336
effective HSP length: 84
effective length of query: 128
effective length of database: 1,790,704
effective search space: 229210112
effective search space used: 229210112
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)