BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645135|ref|NP_207305.1| hypothetical protein
[Helicobacter pylori 26695]
(452 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyos... 53 8e-08
pdb|2TMA|A Chain A, Tropomyosin >gi|230768|pdb|2TMA|B Chain... 42 1e-04
pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 A... 42 1e-04
pdb|1JCH|A Chain A, Crystal Structure Of Colicin E3 In Comp... 36 0.010
pdb|1B6A| Human Methionine Aminopeptidase 2 Complexed Wit... 33 0.066
pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta >g... 33 0.066
pdb|1BN5| Human Methionine Aminopeptidase 2 >gi|5821858|p... 33 0.066
pdb|1E5W|A Chain A, Structure Of Isolated Ferm Domain And F... 33 0.086
pdb|1JK0|A Chain A, Ribonucleotide Reductase Y2y4 Heterodimer 32 0.19
pdb|1L4A|E Chain E, X-Ray Structure Of The Neuronal Complex... 31 0.33
pdb|7CEI|B Chain B, The Endonuclease Domain Of Colicin E7 I... 31 0.33
pdb|1FXZ|A Chain A, Crystal Structure Of Soybean Proglycini... 30 0.43
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Co... 29 1.2
pdb|1CLC| Molecule: Endoglucanase Celd; Ec: 3.2.1.4; Syno... 29 1.2
pdb|1IRU|C Chain C, Crystal Structure Of The Mammalian 20s ... 29 1.2
pdb|1LPQ|A Chain A, Human Dna Topoisomerase I (70 Kda) In N... 28 1.6
pdb|1EJ9|A Chain A, Crystal Structure Of Human Topoisomeras... 28 1.6
pdb|1CII| Colicin Ia 28 1.6
pdb|1A36|A Chain A, Human Dna Topoisomerase I (70 Kda) In N... 28 1.6
pdb|1A31|A Chain A, Human Reconstituted Dna Topoisomerase I... 28 1.6
pdb|1HU3|A Chain A, Middle Domain Of Human Eif4gii 28 1.6
pdb|1A35|A Chain A, Human Reconstituted Dna Topoisomerase I... 28 1.6
pdb|1DDT| Diphtheria Toxin (Dimeric) >gi|576189|pdb|1MDT|... 28 2.1
pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragm... 28 2.8
pdb|1K5D|B Chain B, Crystal Structure Of Ran-Gppnhp-Ranbp1-... 28 2.8
pdb|1D7M|A Chain A, Coiled-Coil Dimerization Domain From Co... 27 4.7
pdb|1LRZ|A Chain A, X-Ray Crystal Structure Of Staphylococc... 27 6.2
pdb|1H4I|B Chain B, Methylobacterium Extorquens Methanol De... 26 8.1
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 52.8 bits (125), Expect = 8e-08
Identities = 56/226 (24%), Positives = 107/226 (46%), Gaps = 31/226 (13%)
Query: 245 VRIKKREEKIDSREIK----REIKQEAIKEPKKANQGTQNAPTLEEKNYQKAERKLDAKE 300
+++ ++EE++ +++ + +E +Q+A E K+ Q ++ EEKN + KL A+
Sbjct: 850 LKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQ--KHTQLCEEKNL--LQEKLQAET 905
Query: 301 ERRYLRDERKKAKATKKAMEFEEREKEHDERDEQETEGRRKALEMDKGDKKEERVKPKEN 360
E Y E + + K E EE E + R E+E E R + L+ +K +++ + +E
Sbjct: 906 EL-YAEAEEMRVRLAAKKQELEEILHEMEARIEEEEE-RSQQLQAEKKKMQQQMLDLEEQ 963
Query: 361 EREIKQEAIKEPSDGNNATQQGEKQNAPKENNAQKEENKPNSKEEK----------RRLK 410
E +EA ++ T G+ + + +++N +KE K L
Sbjct: 964 LEE--EEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLA 1021
Query: 411 EEKKKA--------KAEQRAREFEQRAREHQERDEKELEERRKALE 448
EE++KA K E E E R ++ +E+ +ELE+ ++ LE
Sbjct: 1022 EEEEKAKNLTKLKNKHESMISELEVRLKK-EEKSRQELEKIKRKLE 1066
Score = 47.8 bits (112), Expect = 3e-06
Identities = 56/228 (24%), Positives = 104/228 (45%), Gaps = 31/228 (13%)
Query: 236 LVKKEKRKEVRIKKREEKIDSREIKRE-IKQEAIKEPKKANQGTQNAPTLEEKNYQKA-E 293
L ++K+ + ++ EE+++ E R+ ++ E + K + + +E++N + E
Sbjct: 946 LQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKE 1005
Query: 294 RKLDAKEER-----RYLRDERKKAKATKKAM--------EFEEREKEHDERDEQETEGRR 340
RKL EER L +E +KAK K E E R K+ +E+ QE E +
Sbjct: 1006 RKL--LEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKK-EEKSRQELEKIK 1062
Query: 341 KALEMDKGDKKEERVKPKENEREIKQEAIKEPSDGNNATQQGEKQNAPKENNAQKEENKP 400
+ LE + D E+ + + E+K + K+ + A + E + + K NNA K
Sbjct: 1063 RKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQK-NNALK----- 1116
Query: 401 NSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDEKELEERRKALE 448
+++E + Q E E+ AR E+ +++L E +AL+
Sbjct: 1117 -------KIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALK 1157
Score = 44.7 bits (104), Expect = 2e-05
Identities = 50/217 (23%), Positives = 100/217 (46%), Gaps = 11/217 (5%)
Query: 234 DALVKKEKRKEVRIKKREEKIDSREIKREIKQEAIKEPKKANQGTQNAPTLEEKNYQKAE 293
+A +++E+ + +++ ++K+ + + E E ++E + A Q Q + +K E
Sbjct: 933 EARIEEEEERSQQLQAEKKKMQQQMLDLE---EQLEEEEAARQKLQLEKVTADGKIKKME 989
Query: 294 RK-LDAKEERRYLRDERKKAKATKKAMEFEEREKEHDERDEQETEGRRKAL--EMDKGDK 350
L +++ L ERK + + E+E ++ + + + +++ E++ K
Sbjct: 990 DDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLK 1049
Query: 351 KEERVKPKENEREIKQEAIKEPSDGNNATQQGEKQNAPKENNAQKEENKPNSKEEKRRLK 410
KEE K ++ +IK++ E SD + Q E Q E AQ + + + RL+
Sbjct: 1050 KEE--KSRQELEKIKRKLEGESSDLHE--QIAELQAQIAELKAQLAKKEEELQAALARLE 1105
Query: 411 EE-KKKAKAEQRAREFEQRAREHQERDEKELEERRKA 446
+E +K A ++ RE E + QE E E R KA
Sbjct: 1106 DETSQKNNALKKIRELESHISDLQEDLESEKAARNKA 1142
>pdb|2TMA|A Chain A, Tropomyosin
pdb|2TMA|B Chain B, Tropomyosin
Length = 284
Score = 42.0 bits (97), Expect = 1e-04
Identities = 51/226 (22%), Positives = 99/226 (43%), Gaps = 30/226 (13%)
Query: 235 ALVKKEKRKEVRIKKREEKIDSREIKREIKQEAIKEPKKANQGTQNAPTLEEKNYQKAER 294
+L KK K E + K E + + K E+ ++ + + L E+ +A+
Sbjct: 45 SLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQE 104
Query: 295 KLD------------AKEERRYLRDERKKAKATKKAMEFEE---REKEH--DERDEQETE 337
+L A E R ++ +A+ ++ ME +E +E +H ++ D + E
Sbjct: 105 RLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEE 164
Query: 338 GRRKALEMDKG-DKKEERVKPKENEREIKQEAIKEPSDGNNATQQGEKQNAPKENNAQKE 396
RK + ++ ++ EER + E + +E IK ++ + E A+K
Sbjct: 165 VARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSL----------EAQAEKY 214
Query: 397 ENKPNSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDEKELEE 442
K + EE+ ++ +K K +AE RA EF +R+ E+ +LE+
Sbjct: 215 SQKEDKYEEEIKVLSDKLK-EAETRA-EFAERSVTKLEKSIDDLED 258
Score = 39.7 bits (91), Expect = 7e-04
Identities = 46/181 (25%), Positives = 83/181 (45%), Gaps = 19/181 (10%)
Query: 273 KANQGTQNAPTLEEKNYQKAERKLDAKEERRYLRDERKK-AKATKKAMEFEE--REKEHD 329
+A Q + E+++ Q + + +++ + DE K ++A K A E E +K D
Sbjct: 21 RAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATD 80
Query: 330 ERDEQETEGRRKALEMDKGDKKEERVKPKENEREIKQEAIKEPSDGNNATQQGEKQNAPK 389
+ + RR L ++ D+ +ER+ A+++ + A + E+
Sbjct: 81 AEADVASLNRRIQLVEEELDRAQERLAT----------ALQKLEEAEKAADESERGMKVI 130
Query: 390 ENNAQKEENKPNSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQ--ERDEKELEERRKAL 447
E+ AQK+E K +E + LKE K A E R++E+ AR+ E D + EER +
Sbjct: 131 ESRAQKDEEKMEIQEIQ--LKEAKHIA--EDADRKYEEVARKLVIIESDLERAEERAELS 186
Query: 448 E 448
E
Sbjct: 187 E 187
Score = 31.6 bits (70), Expect = 0.19
Identities = 34/142 (23%), Positives = 58/142 (39%), Gaps = 22/142 (15%)
Query: 314 ATKKAMEFEEREKEHDERDEQETEGRRKALEMDKGDKKEERVKPKENEREIKQEAIKEPS 373
A KK M+ + +KE+ ++ E +KA E +R K E+E Q+ +K
Sbjct: 3 AIKKKMQMLKLDKENALDRAEQAEADKKAAE--------DRSKQLEDELVSLQKKLK--- 51
Query: 374 DGNNATQQGEKQNAPKENNAQKEENKPNSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQ 433
G + K + A K+ + EK+ E A +R + E+ Q
Sbjct: 52 --------GTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQ 103
Query: 434 ER---DEKELEERRKALEAGKK 452
ER ++LEE KA + ++
Sbjct: 104 ERLATALQKLEEAEKAADESER 125
Score = 27.7 bits (60), Expect = 2.8
Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 14/107 (13%)
Query: 233 YDALVKKEKRKEVRIKKREEKIDSREIKREIKQEAIKEPKKANQGTQNAPTLEEKNYQKA 292
Y+ + +K E +++ EE+ + E K +E IK T N +LE + + +
Sbjct: 162 YEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTV------TNNLKSLEAQAEKYS 215
Query: 293 ERKLDAKEERRYLRDERKKAKATKKAMEFEER-----EKEHDERDEQ 334
+++ +EE + L D+ K+A+ EF ER EK D+ +++
Sbjct: 216 QKEDKYEEEIKVLSDKLKEAET---RAEFAERSVTKLEKSIDDLEDE 259
>pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|B Chain B, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|C Chain C, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|D Chain D, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
Length = 284
Score = 42.0 bits (97), Expect = 1e-04
Identities = 51/226 (22%), Positives = 99/226 (43%), Gaps = 30/226 (13%)
Query: 235 ALVKKEKRKEVRIKKREEKIDSREIKREIKQEAIKEPKKANQGTQNAPTLEEKNYQKAER 294
+L KK K E + K E + + K E+ ++ + + L E+ +A+
Sbjct: 45 SLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQE 104
Query: 295 KLD------------AKEERRYLRDERKKAKATKKAMEFEE---REKEH--DERDEQETE 337
+L A E R ++ +A+ ++ ME +E +E +H ++ D + E
Sbjct: 105 RLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEE 164
Query: 338 GRRKALEMDKG-DKKEERVKPKENEREIKQEAIKEPSDGNNATQQGEKQNAPKENNAQKE 396
RK + ++ ++ EER + E + +E IK ++ + E A+K
Sbjct: 165 VARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSL----------EAQAEKY 214
Query: 397 ENKPNSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDEKELEE 442
K + EE+ ++ +K K +AE RA EF +R+ E+ +LE+
Sbjct: 215 SQKEDKYEEEIKVLSDKLK-EAETRA-EFAERSVTKLEKSIDDLED 258
Score = 40.0 bits (92), Expect = 5e-04
Identities = 50/176 (28%), Positives = 85/176 (47%), Gaps = 18/176 (10%)
Query: 284 LEEKNYQKAERKLDAKEERRYLRDE----RKKAKATKKAME-FEEREKEHDERDEQETEG 338
L+ + +A++K A++ + L DE +KK KAT+ ++ + E K+ E+ E E
Sbjct: 19 LDRADEAEADKKA-AEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLEL-AEK 76
Query: 339 RRKALEMDKGDKKEERVKPKENEREIKQE----AIKEPSDGNNATQQGEKQNAPKENNAQ 394
+ E D R++ E E + QE A+++ + A + E+ E+ AQ
Sbjct: 77 KATDAEADVASLNR-RIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQ 135
Query: 395 KEENKPNSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQ--ERDEKELEERRKALE 448
K+E K +E + LKE K A E R++E+ AR+ E D + EER + E
Sbjct: 136 KDEEKMEIQEIQ--LKEAKHIA--EDADRKYEEVARKLVIIESDLERAEERAELSE 187
Score = 33.9 bits (76), Expect = 0.039
Identities = 36/142 (25%), Positives = 57/142 (39%), Gaps = 22/142 (15%)
Query: 314 ATKKAMEFEEREKEHDERDEQETEGRRKALEMDKGDKKEERVKPKENEREIKQEAIKEPS 373
A KK M+ + +KE+ E E +KA E +R K E+E Q+ +K
Sbjct: 3 AIKKKMQMLKLDKENALDRADEAEADKKAAE--------DRSKQLEDELVSLQKKLKATE 54
Query: 374 DGNNATQQGEKQNAPKENNAQKEENKPNSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQ 433
D K + A K+ + EK+ E A +R + FE+ Q
Sbjct: 55 D-----------ELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQ 103
Query: 434 ER---DEKELEERRKALEAGKK 452
ER ++LEE KA + ++
Sbjct: 104 ERLATALQKLEEAEKAADESER 125
Score = 27.7 bits (60), Expect = 2.8
Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 14/107 (13%)
Query: 233 YDALVKKEKRKEVRIKKREEKIDSREIKREIKQEAIKEPKKANQGTQNAPTLEEKNYQKA 292
Y+ + +K E +++ EE+ + E K +E IK T N +LE + + +
Sbjct: 162 YEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTV------TNNLKSLEAQAEKYS 215
Query: 293 ERKLDAKEERRYLRDERKKAKATKKAMEFEER-----EKEHDERDEQ 334
+++ +EE + L D+ K+A+ EF ER EK D+ +++
Sbjct: 216 QKEDKYEEEIKVLSDKLKEAET---RAEFAERSVTKLEKSIDDLEDE 259
>pdb|1JCH|A Chain A, Crystal Structure Of Colicin E3 In Complex With Its
Immunity Protein
pdb|1JCH|C Chain C, Crystal Structure Of Colicin E3 In Complex With Its
Immunity Protein
Length = 551
Score = 35.8 bits (81), Expect = 0.010
Identities = 33/164 (20%), Positives = 67/164 (40%), Gaps = 21/164 (12%)
Query: 262 EIKQEAIKEPKKANQGTQNAPT-LEEKNYQKAERKLDAKEERRYLRDERKKAKATKKAME 320
++KQ +E ++ + P E+NY++A +L+ E R++ ++AKA +
Sbjct: 295 QVKQRQDEENRRQQEWDATHPVEAAERNYERARAELNQANED-VARNQERQAKAVQV--- 350
Query: 321 FEEREKEHDERDEQETEGRRKALEMDK----------------GDKKEERVKPKENEREI 364
+ R+ E D ++ + + + ++ G K + N++
Sbjct: 351 YNSRKSELDAANKTLADAIAEIKQFNRFAHDPMAGGHRMWQMAGLKAQRAQTDVNNKQAA 410
Query: 365 KQEAIKEPSDGNNATQQGEKQNAPKENNAQKEENKPNSKEEKRR 408
A KE SD + A + KE+ + EN N ++ K R
Sbjct: 411 FDAAAKEKSDADAALSSAMESRKKKEDKKRSAENNLNDEKNKPR 454
>pdb|1B6A| Human Methionine Aminopeptidase 2 Complexed With Tnp-470
Length = 478
Score = 33.1 bits (74), Expect = 0.066
Identities = 19/69 (27%), Positives = 34/69 (48%), Gaps = 2/69 (2%)
Query: 371 EPSDGNNATQQGEKQNAPKENNAQKEENKPNSKEEKRRLKEEKKKAKAEQRAREFEQRAR 430
+P D ++ A K+ +K+ P++ E+ KE A ++ AR+ E+ A
Sbjct: 19 DPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESG--ASVDEVARQLERSAL 76
Query: 431 EHQERDEKE 439
E +ERDE +
Sbjct: 77 EDKERDEDD 85
Score = 29.3 bits (64), Expect = 0.95
Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 18/105 (17%)
Query: 298 AKEERRYLRDERKKAKATKKAMEFEEREKEHDERDEQETEGRRKALEMDKGDKKEERVKP 357
A+E + R ++KK+K A E E ++ DE + R ALE + D+ +E
Sbjct: 31 AEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKERDEDDE---- 86
Query: 358 KENEREIKQEAIKEPSDGNNATQQGEKQNAPKENNAQKEENKPNS 402
DG+ AT G+K+ K+ K + P S
Sbjct: 87 ------------DGDGDGDGAT--GKKKKKKKKKRGPKVQTDPPS 117
Score = 26.6 bits (57), Expect = 6.2
Identities = 17/67 (25%), Positives = 29/67 (42%)
Query: 382 GEKQNAPKENNAQKEENKPNSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDEKELE 441
G N + + ++E ++E ++ + +KKK+K A E E DE +
Sbjct: 11 GSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQ 70
Query: 442 ERRKALE 448
R ALE
Sbjct: 71 LERSALE 77
>pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta
pdb|1JAD|B Chain B, C-Terminal Domain Of Turkey Plc-Beta
Length = 251
Score = 33.1 bits (74), Expect = 0.066
Identities = 41/202 (20%), Positives = 82/202 (40%), Gaps = 12/202 (5%)
Query: 237 VKKEKRKEVRIKKREEKIDSREIKREIKQ-------EAIKEPKKANQGTQNAPTLEEKNY 289
+K K++E +K+ E K R + E+ Q E + +Q + LE +
Sbjct: 31 LKLLKKQEKELKELERKGSKR--REELLQKYSVLFLEPVYPRGLDSQVVELKERLEXELI 88
Query: 290 QKAERKLDAKEERRYLRDERKKAKATKKAMEFEERE-KEHDERDEQETEGRRKALEMDKG 348
E D R+ + AK T+ A E + E K E E + +K LE +
Sbjct: 89 HLGEEYHDGIRRRKEQHATEQTAKITELAREKQIAELKALKESSESNIKDIKKKLEAKRL 148
Query: 349 DKKEERVKPKENEREIKQEAIKEPSDGNNATQQGEKQNAPKENNAQKEENKPNSKEEKRR 408
D+ + V + + QE +K+ + ++ + + E A+ ++ + E R
Sbjct: 149 DRIQ--VXXRSTSDKAAQERLKKEINNSHIQEVVQTIKLLTEKTARYQQKLEEKQAENLR 206
Query: 409 LKEEKKKAKAEQRAREFEQRAR 430
+EK+ ++ E+E++ +
Sbjct: 207 AIQEKEGQLQQEAVAEYEEKLK 228
>pdb|1BN5| Human Methionine Aminopeptidase 2
pdb|1BOA| Human Methionine Aminopeptidase 2 Complexed With Angiogenesis
Inhibitor Fumagillin
Length = 478
Score = 33.1 bits (74), Expect = 0.066
Identities = 19/69 (27%), Positives = 34/69 (48%), Gaps = 2/69 (2%)
Query: 371 EPSDGNNATQQGEKQNAPKENNAQKEENKPNSKEEKRRLKEEKKKAKAEQRAREFEQRAR 430
+P D ++ A K+ +K+ P++ E+ KE A ++ AR+ E+ A
Sbjct: 19 DPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESG--ASVDEVARQLERSAL 76
Query: 431 EHQERDEKE 439
E +ERDE +
Sbjct: 77 EDKERDEDD 85
Score = 29.3 bits (64), Expect = 0.95
Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 18/105 (17%)
Query: 298 AKEERRYLRDERKKAKATKKAMEFEEREKEHDERDEQETEGRRKALEMDKGDKKEERVKP 357
A+E + R ++KK+K A E E ++ DE + R ALE + D+ +E
Sbjct: 31 AEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKERDEDDE---- 86
Query: 358 KENEREIKQEAIKEPSDGNNATQQGEKQNAPKENNAQKEENKPNS 402
DG+ AT G+K+ K+ K + P S
Sbjct: 87 ------------DGDGDGDGAT--GKKKKKKKKKRGPKVQTDPPS 117
Score = 26.6 bits (57), Expect = 6.2
Identities = 17/67 (25%), Positives = 29/67 (42%)
Query: 382 GEKQNAPKENNAQKEENKPNSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDEKELE 441
G N + + ++E ++E ++ + +KKK+K A E E DE +
Sbjct: 11 GSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQ 70
Query: 442 ERRKALE 448
R ALE
Sbjct: 71 LERSALE 77
>pdb|1E5W|A Chain A, Structure Of Isolated Ferm Domain And First Long Helix Of
Moesin
Length = 346
Score = 32.7 bits (73), Expect = 0.086
Identities = 16/43 (37%), Positives = 25/43 (57%)
Query: 293 ERKLDAKEERRYLRDERKKAKATKKAMEFEEREKEHDERDEQE 335
+ K A+EE+ + ER + KK E E+EKE ER+++E
Sbjct: 304 QMKAQAREEKHQKQMERAMLENEKKKREMAEKEKEKIEREKEE 346
Score = 31.6 bits (70), Expect = 0.19
Identities = 13/51 (25%), Positives = 31/51 (60%)
Query: 389 KENNAQKEENKPNSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDEKE 439
K + + ++ K ++EEK + + E+ + E++ RE ++ +E ER+++E
Sbjct: 296 KPDTIEVQQMKAQAREEKHQKQMERAMLENEKKKREMAEKEKEKIEREKEE 346
Score = 30.4 bits (67), Expect = 0.43
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 284 LEEKNYQKAERKLDAKEERRYLRDERKKAKATKKAMEFEEREKE 327
+++ Q E K + ER L +E+KK + +K E EREKE
Sbjct: 302 VQQMKAQAREEKHQKQMERAMLENEKKKREMAEKEKEKIEREKE 345
>pdb|1JK0|A Chain A, Ribonucleotide Reductase Y2y4 Heterodimer
Length = 419
Score = 31.6 bits (70), Expect = 0.19
Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 357 PKENEREIKQEAIKEPSDGNNATQQGEKQNAPKENNAQKEENKPNSKEEKRRLKEEKKKA 416
PKE + +A+ + + K N KE +EEN+ S K +L ++ +
Sbjct: 22 PKETPSKAAADALSD------LEIKDSKSNLNKELETLREENRVKSDMLKEKLSKDAENH 75
Query: 417 KAEQRAREFEQRAREHQERDEKELEERRK 445
KA ++ + + + E++E L E ++
Sbjct: 76 KAYLKSHQVHRHKLKEMEKEEPLLNEDKE 104
>pdb|1L4A|E Chain E, X-Ray Structure Of The Neuronal ComplexinSNARE COMPLEX
From The Squid Loligo Pealei
Length = 79
Score = 30.8 bits (68), Expect = 0.33
Identities = 16/49 (32%), Positives = 27/49 (54%)
Query: 399 KPNSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDEKELEERRKAL 447
K S E++ E++ A E+ RE E+R +E + E+E EE R+ +
Sbjct: 2 KSASGEKEGNENAEEEAAAIEEARREAEERRKEKHRKMEEEREEMRQTI 50
Score = 29.3 bits (64), Expect = 0.95
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 308 ERKKAKATKKAMEFEEREKEHDERDEQETEGRRKALEMDKGDKKEERVKPK 358
E + A + E EER KE + E+E E R+ + G KK+ + +P+
Sbjct: 15 EEEAAAIEEARREAEERRKEKHRKMEEEREEMRQTIRDKYGLKKKVKEEPE 65
Score = 28.5 bits (62), Expect = 1.6
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 272 KKANQGTQN-APTLEEKNYQKAERKLDAKEERRYLRDERKKAKAT-KKAMEFEEREKEHD 329
K+ N+ + A +EE + ER+ KE+ R + +ER++ + T + +++ KE
Sbjct: 8 KEGNENAEEEAAAIEEARREAEERR---KEKHRKMEEEREEMRQTIRDKYGLKKKVKEEP 64
Query: 330 ERDEQETEGR 339
E + EGR
Sbjct: 65 EAEADLDEGR 74
Score = 27.7 bits (60), Expect = 2.8
Identities = 17/63 (26%), Positives = 29/63 (45%)
Query: 310 KKAKATKKAMEFEEREKEHDERDEQETEGRRKALEMDKGDKKEERVKPKENEREIKQEAI 369
K A K+ E E E E +E E RRK +++EE + ++ +K++
Sbjct: 2 KSASGEKEGNENAEEEAAAIEEARREAEERRKEKHRKMEEEREEMRQTIRDKYGLKKKVK 61
Query: 370 KEP 372
+EP
Sbjct: 62 EEP 64
Score = 26.6 bits (57), Expect = 6.2
Identities = 19/74 (25%), Positives = 41/74 (54%), Gaps = 4/74 (5%)
Query: 375 GNNATQQGE-KQNAPKENNAQKE---ENKPNSKEEKRRLKEEKKKAKAEQRAREFEQRAR 430
G +A+ + E +NA +E A +E E + KE+ R+++EE+++ + R + ++
Sbjct: 1 GKSASGEKEGNENAEEEAAAIEEARREAEERRKEKHRKMEEEREEMRQTIRDKYGLKKKV 60
Query: 431 EHQERDEKELEERR 444
+ + E +L+E R
Sbjct: 61 KEEPEAEADLDEGR 74
>pdb|7CEI|B Chain B, The Endonuclease Domain Of Colicin E7 In Complex With Its
Inhibitor Im7 Protein
Length = 206
Score = 30.8 bits (68), Expect = 0.33
Identities = 23/127 (18%), Positives = 56/127 (43%), Gaps = 10/127 (7%)
Query: 305 LRDERKKAKATKKAMEFEEREKEHDERDEQETEGRRKALEMDKGDKKEERVKPKENEREI 364
L+ +R + K F+ KE + D + + ++ ++ + KE + +
Sbjct: 20 LKAQRAQTDVNNKKAAFDAAAKEKSDAD----------VALSSALERRKQKENKEKDAKA 69
Query: 365 KQEAIKEPSDGNNATQQGEKQNAPKENNAQKEENKPNSKEEKRRLKEEKKKAKAEQRARE 424
K + + + AT +G+ N NNA K+ P +L++++ K+ + R +
Sbjct: 70 KLDKESKRNKPGKATGKGKPVNNKWLNNAGKDLGSPVPDRIANKLRDKEFKSFDDFRKKF 129
Query: 425 FEQRARE 431
+E+ +++
Sbjct: 130 WEEVSKD 136
>pdb|1FXZ|A Chain A, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
pdb|1FXZ|B Chain B, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
pdb|1FXZ|C Chain C, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
Length = 476
Score = 30.4 bits (67), Expect = 0.43
Identities = 31/146 (21%), Positives = 57/146 (38%), Gaps = 25/146 (17%)
Query: 293 ERKLDAKEERRYL--RDERKKAKATKKAMEFEEREKEHDERDEQETEGRRKALEMD---- 346
E +LD R YL E++ K ++ + ++ +H + +E E ++
Sbjct: 153 ENQLDQMPRRFYLAGNQEQEFLKYQQEQGGHQSQKGKHQQEEENEGGSILSGFTLEFLEH 212
Query: 347 --KGDKKEERVKPKENEREIKQ---------EAIKEPSDGNNATQQGEKQNAPKENNAQK 395
DK+ + ENE E K IK P+D E+Q P+E ++
Sbjct: 213 AFSVDKQIAKNLQGENEGEDKGAIVTVKGGLSVIKPPTD--------EQQQRPQEEEEEE 264
Query: 396 EENKPNSKEEKRRLKEEKKKAKAEQR 421
E+ KP K + + + + +R
Sbjct: 265 EDEKPQCKGKDKHCQRPRGSQSKSRR 290
>pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp.
pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
Length = 592
Score = 28.9 bits (63), Expect = 1.2
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Query: 359 ENEREIKQEAIKEPSDGNNATQQGEKQNAPKENNAQKEENKPNSKEEKRRLKEEKKKAKA 418
E E+EI+ E +K S +A E Q N Q E K S +E + EK +
Sbjct: 484 EKEKEIEVERVKAESAQASAKMLHEMQ----RKNEQMMEQKERSYQEHLKQLTEKMENDR 539
Query: 419 EQRAREFEQRAREHQERDEKELEE 442
Q +E E+ + E+ L+E
Sbjct: 540 VQLLKEQERTLALKLQEQEQLLKE 563
Score = 27.7 bits (60), Expect = 2.8
Identities = 25/121 (20%), Positives = 50/121 (40%), Gaps = 20/121 (16%)
Query: 350 KKEERVKPKEN--EREIKQEAIKEPSDGNNATQQGEKQNAPKENNAQKEENKPNSKEEKR 407
KK+ +P++ EI Q +K +A Q ++ KE + E K S +
Sbjct: 444 KKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASA 503
Query: 408 RLKEE---KKKAKAEQRAREFEQRAREHQERDEKE---------------LEERRKALEA 449
++ E K + EQ+ R +++ ++ E+ E + L+E+ + L+
Sbjct: 504 KMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKE 563
Query: 450 G 450
G
Sbjct: 564 G 564
>pdb|1CLC| Molecule: Endoglucanase Celd; Ec: 3.2.1.4; Synonyms:
1,4-Beta-D-Glucan-Glucanohydrolase, Cellulase
Endo-1,4-Beta-Glucanase D
Length = 639
Score = 28.9 bits (63), Expect = 1.2
Identities = 19/75 (25%), Positives = 30/75 (39%)
Query: 41 FPAHDLQVGEFGFVVTKLSDYEIVNSEVVIIAVENGVATAKFRAFESMKQRHLPTPRMVA 100
F +D Q E K+S + N+ + A ++G +T ++ R M
Sbjct: 303 FRPYDPQYAEKCINAAKVSYEFLKNNPANVFANQSGFSTGEYATVSDADDRLWAAAEMWE 362
Query: 101 RKGDLVYFRQFNNQA 115
GD Y R F N+A
Sbjct: 363 TLGDEEYLRDFENRA 377
>pdb|1IRU|C Chain C, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|Q Chain Q, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 261
Score = 28.9 bits (63), Expect = 1.2
Identities = 28/116 (24%), Positives = 50/116 (42%), Gaps = 8/116 (6%)
Query: 219 KLFSGSQSKNYFAYYDALVKKEKRKEVRIKKREEKIDSREIKREIKQEAIK------EPK 272
+L+ S NY + + V + K++ K +K + AIK +
Sbjct: 146 QLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALAL-AIKVLNKTMDVS 204
Query: 273 KANQGTQNAPTLEEKNYQKAERKLDAKE-ERRYLRDERKKAKATKKAMEFEEREKE 327
K + TL +N + R L KE E+ + E ++AKA ++ E E++EK+
Sbjct: 205 KLSAEKVEIATLTRENGKTVIRVLKQKEVEQLIKKHEEEEAKAEREKKEKEQKEKD 260
>pdb|1LPQ|A Chain A, Human Dna Topoisomerase I (70 Kda) In Non-Covalent Complex
With A 22 Base Pair Dna Duplex Containing An 8-Oxog
Lesion
Length = 564
Score = 28.5 bits (62), Expect = 1.6
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 393 AQKEENKPNSKEEKRRLKEEKKKAKAE 419
AQ E K SKEEK ++KEE +K E
Sbjct: 110 AQTEARKQMSKEEKLKIKEENEKLLKE 136
Score = 26.2 bits (56), Expect = 8.1
Identities = 36/157 (22%), Positives = 65/157 (40%), Gaps = 26/157 (16%)
Query: 212 IDAGTLGK----LFSGSQSKNYFAYYDALVKKEKRKEVRIKKREEKIDSREIKREIKQEA 267
++ G L K L G +K + Y ++ +++ KE+ +E I ++ + A
Sbjct: 367 LNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAP--DENIPAKILSYNRANRA 424
Query: 268 IK--------EPKKANQGTQNAPTLEEKNYQKAERKLDAKEERRYLRDERKKAKATKKAM 319
+ PK + N L+ K K E+ DA R + K AKA K M
Sbjct: 425 VAILCNHQRAPPKTFEKSMMN---LQTKIDAKKEQLADA-------RRDLKSAKADAKVM 474
Query: 320 EFEEREK--EHDERDEQETEGRRKALEMDKGDKKEER 354
+ + +K E ++ Q E + LE+ D++E +
Sbjct: 475 KDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENK 511
>pdb|1EJ9|A Chain A, Crystal Structure Of Human Topoisomerase I Dna Complex
Length = 563
Score = 28.5 bits (62), Expect = 1.6
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 393 AQKEENKPNSKEEKRRLKEEKKKAKAE 419
AQ E K SKEEK ++KEE +K E
Sbjct: 109 AQTEARKQMSKEEKLKIKEENEKLLKE 135
Score = 26.6 bits (57), Expect = 6.2
Identities = 37/157 (23%), Positives = 65/157 (40%), Gaps = 26/157 (16%)
Query: 212 IDAGTLGK----LFSGSQSKNYFAYYDALVKKEKRKEVRIKKREEKIDSREIKREIKQEA 267
++ G L K L G +K + Y ++ +++ KE+ +E I ++ + A
Sbjct: 366 LNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAP--DENIPAKILSYNRANRA 423
Query: 268 --------IKEPKKANQGTQNAPTLEEKNYQKAERKLDAKEERRYLRDERKKAKATKKAM 319
I PK + N L+ K K E+ DA R + K AKA K M
Sbjct: 424 VAILCNHQIAPPKTFEKSMMN---LQTKIDAKKEQLADA-------RRDLKSAKADAKVM 473
Query: 320 EFEEREK--EHDERDEQETEGRRKALEMDKGDKKEER 354
+ + +K E ++ Q E + LE+ D++E +
Sbjct: 474 KDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENK 510
>pdb|1CII| Colicin Ia
Length = 602
Score = 28.5 bits (62), Expect = 1.6
Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 32/137 (23%)
Query: 334 QETEGRRKAL--EMDKGDKKEERVKPKENEREIKQEAIKEPSDGNNATQQGEKQNAPKEN 391
++ EG +K E+ + DK +R+ N+ + A+ + N + + E+++A
Sbjct: 335 EDVEGDKKIYNAEVAEWDKLRQRLLDARNKITSAESAVNSARN-NLSARTNEQKHANDAL 393
Query: 392 NA--QKEENKPNS--------KEEKRRLKE-------------------EKKKAKAEQRA 422
NA +++EN N EEKR+ E EK AKAEQ A
Sbjct: 394 NALLKEKENIRNQLSGINQKIAEEKRKQDELKATKDAINFTTEFLKSVSEKYGAKAEQLA 453
Query: 423 REFEQRAREHQERDEKE 439
RE +A+ + R+ +E
Sbjct: 454 REMAGQAKGKKIRNVEE 470
>pdb|1A36|A Chain A, Human Dna Topoisomerase I (70 Kda) In Non-Covalent Complex
With A 22 Base Pair Dna Duplex
Length = 592
Score = 28.5 bits (62), Expect = 1.6
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 393 AQKEENKPNSKEEKRRLKEEKKKAKAE 419
AQ E K SKEEK ++KEE +K E
Sbjct: 138 AQTEARKQMSKEEKLKIKEENEKLLKE 164
Score = 26.2 bits (56), Expect = 8.1
Identities = 36/157 (22%), Positives = 65/157 (40%), Gaps = 26/157 (16%)
Query: 212 IDAGTLGK----LFSGSQSKNYFAYYDALVKKEKRKEVRIKKREEKIDSREIKREIKQEA 267
++ G L K L G +K + Y ++ +++ KE+ +E I ++ + A
Sbjct: 395 LNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAP--DENIPAKILSYNRANRA 452
Query: 268 IK--------EPKKANQGTQNAPTLEEKNYQKAERKLDAKEERRYLRDERKKAKATKKAM 319
+ PK + N L+ K K E+ DA R + K AKA K M
Sbjct: 453 VAILCNHQRAPPKTFEKSMMN---LQTKIDAKKEQLADA-------RRDLKSAKADAKVM 502
Query: 320 EFEEREK--EHDERDEQETEGRRKALEMDKGDKKEER 354
+ + +K E ++ Q E + LE+ D++E +
Sbjct: 503 KDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENK 539
>pdb|1A31|A Chain A, Human Reconstituted Dna Topoisomerase I In Covalent
Complex With A 22 Base Pair Dna Duplex
Length = 538
Score = 28.5 bits (62), Expect = 1.6
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 393 AQKEENKPNSKEEKRRLKEEKKKAKAE 419
AQ E K SKEEK ++KEE +K E
Sbjct: 137 AQTEARKQMSKEEKLKIKEENEKLLKE 163
>pdb|1HU3|A Chain A, Middle Domain Of Human Eif4gii
Length = 260
Score = 28.5 bits (62), Expect = 1.6
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 310 KKAKATKKAMEFEEREKEHDERDEQETEGRRKAL 343
KK K + A EER + HDE +E + + RR+++
Sbjct: 114 KKQKELEAASAPEERTRLHDELEEAKDKARRRSI 147
Score = 26.9 bits (58), Expect = 4.7
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 376 NNATQQGEKQNAPKE--NNAQKEENKPNSKEEKRRLKEEKKKAKAEQRAR 423
N ++ EK A + QKE ++ EE+ RL +E ++AK + R R
Sbjct: 96 NRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRR 145
Score = 26.9 bits (58), Expect = 4.7
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 391 NNAQKEENKPNSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDEKELEERRKAL 447
N QKE K + ++ +KK K + A E+R R H E +E + + RR+++
Sbjct: 96 NRCQKEFEKDKADDDVF-----EKKQKELEAASAPEERTRLHDELEEAKDKARRRSI 147
>pdb|1A35|A Chain A, Human Reconstituted Dna Topoisomerase I In Non-Covalent
Complex With A 22 Base Pair Dna Duplex
Length = 538
Score = 28.5 bits (62), Expect = 1.6
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 393 AQKEENKPNSKEEKRRLKEEKKKAKAE 419
AQ E K SKEEK ++KEE +K E
Sbjct: 137 AQTEARKQMSKEEKLKIKEENEKLLKE 163
>pdb|1DDT| Diphtheria Toxin (Dimeric)
pdb|1MDT|A Chain A, Monomeric Diphtheria Toxin
pdb|1MDT|B Chain B, Monomeric Diphtheria Toxin
pdb|1SGK| Nucleotide-Free Diphtheria Toxin
pdb|1F0L|B Chain B, 1.55 Angstrom Crystal Structure Of Wild Type Diphtheria
Toxin
pdb|1XDT|T Chain T, Complex Of Diphtheria Toxin And Heparin-Binding Epidermal
Growth Factor
pdb|1TOX|A Chain A, Diphtheria Toxin Dimer Complexed With Nad
pdb|1TOX|B Chain B, Diphtheria Toxin Dimer Complexed With Nad
pdb|1F0L|A Chain A, 1.55 Angstrom Crystal Structure Of Wild Type Diphtheria
Toxin
Length = 535
Score = 28.1 bits (61), Expect = 2.1
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 12/54 (22%)
Query: 384 KQNAPKENNAQKEENKPNSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDE 437
K++ P +N + NK S+E KA+Q EF Q A EH E E
Sbjct: 221 KEHGPIKNKMSESPNKTVSEE------------KAKQYLEEFHQTALEHPELSE 262
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 27.7 bits (60), Expect = 2.8
Identities = 10/26 (38%), Positives = 18/26 (68%)
Query: 383 EKQNAPKENNAQKEENKPNSKEEKRR 408
+KQN P ++ ++E+KPN K +R+
Sbjct: 234 KKQNRPIQSGTNEKESKPNDKNGERK 259
>pdb|1K5D|B Chain B, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|E Chain E, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|H Chain H, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|K Chain K, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|B Chain B, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|E Chain E, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|H Chain H, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|K Chain K, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
Length = 201
Score = 27.7 bits (60), Expect = 2.8
Identities = 19/66 (28%), Positives = 33/66 (49%), Gaps = 9/66 (13%)
Query: 303 RYLRDERKKAKATKKAMEFEEREKEHDERDEQETEGRRKALEMDKGDKKEERVKPKENER 362
R+L E + TK FEE KE +ER+++ G+ D +K E+++ +
Sbjct: 141 RFLNAENAQKFKTK----FEECRKEIEEREKKAGSGKN-----DHAEKVAEKLEALSVKE 191
Query: 363 EIKQEA 368
E K++A
Sbjct: 192 ETKEDA 197
>pdb|1D7M|A Chain A, Coiled-Coil Dimerization Domain From Cortexillin I
pdb|1D7M|B Chain B, Coiled-Coil Dimerization Domain From Cortexillin I
Length = 101
Score = 26.9 bits (58), Expect = 4.7
Identities = 25/111 (22%), Positives = 46/111 (40%), Gaps = 16/111 (14%)
Query: 246 RIKKREEKIDSREIKREIKQEAIKEPKKANQGTQNAPTLEEKNYQKAERKLDAKEERRYL 305
R+ E ++S ++ RE + IK+ ++ N A + + E + L
Sbjct: 5 RLAGLENSLESEKVSRE---QLIKQK-------------DQLNSLLASLESEGAEREKRL 48
Query: 306 RDERKKAKATKKAMEFEEREKEHDERDEQETEGRRKALEMDKGDKKEERVK 356
R+ K T K +E E+ + E +TE R LE+ + +E+ K
Sbjct: 49 RELEAKLDETLKNLELEKLARMELEARLAKTEKDRAILELKLAEAIDEKSK 99
>pdb|1LRZ|A Chain A, X-Ray Crystal Structure Of Staphylococcus Aureus Fema
Length = 426
Score = 26.6 bits (57), Expect = 6.2
Identities = 31/146 (21%), Positives = 61/146 (41%), Gaps = 10/146 (6%)
Query: 272 KKANQGTQNAPTLEEKNYQKAERKLDAKEERRYLRDERKKAKATKKAMEFEEREKEHDER 331
K A+ +N L ++N +K ++ + R+L +E + + ME K +R
Sbjct: 166 KTADDIIKNMDGLRKRNTKKVKKN---GVKVRFLSEE--ELPIFRSFMEDTSESKAFADR 220
Query: 332 DEQETEGRRK-----ALEMDKGDKKEERVKPKENEREIKQEAIKEPSDGNNATQQGEKQN 386
D++ R K L +E +K ER+I + + + + +K +
Sbjct: 221 DDKFYYNRLKYYKDRVLVPLAYINFDEYIKELNEERDILNKDLNKALKDIEKRPENKKAH 280
Query: 387 APKENNAQKEENKPNSKEEKRRLKEE 412
++N Q+ + EE +RL+EE
Sbjct: 281 NKRDNLQQQLDANEQKIEEGKRLQEE 306
>pdb|1H4I|B Chain B, Methylobacterium Extorquens Methanol Dehydrogenase
pdb|1H4I|D Chain D, Methylobacterium Extorquens Methanol Dehydrogenase
pdb|1H4J|B Chain B, Methylobacterium Extorquens Methanol Dehydrogenase D303e
Mutant
pdb|1H4J|D Chain D, Methylobacterium Extorquens Methanol Dehydrogenase D303e
Mutant
pdb|1H4J|F Chain F, Methylobacterium Extorquens Methanol Dehydrogenase D303e
Mutant
pdb|1H4J|H Chain H, Methylobacterium Extorquens Methanol Dehydrogenase D303e
Mutant
Length = 74
Score = 26.2 bits (56), Expect = 8.1
Identities = 17/52 (32%), Positives = 24/52 (45%), Gaps = 3/52 (5%)
Query: 371 EPSDGNNATQQGEK---QNAPKENNAQKEENKPNSKEEKRRLKEEKKKAKAE 419
EP G G K ++ PKE N Q + K + K+R++ KK K E
Sbjct: 14 EPKPGFPEKIAGSKYDPKHDPKELNKQADSIKQMEERNKKRVENFKKTGKFE 65
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.311 0.130 0.345
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,380,308
Number of Sequences: 13198
Number of extensions: 95653
Number of successful extensions: 325
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 237
Number of HSP's gapped (non-prelim): 85
length of query: 452
length of database: 2,899,336
effective HSP length: 91
effective length of query: 361
effective length of database: 1,698,318
effective search space: 613092798
effective search space used: 613092798
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (26.2 bits)