BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645138|ref|NP_207308.1| hypothetical protein
[Helicobacter pylori 26695]
(38 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1EJ6|A Chain A, Reovirus Core 23 7.3
pdb|1KTE| Crystal Structure Of Thioltransferase At 2.2 An... 23 7.3
pdb|1KBL|A Chain A, Pyruvate Phosphate Dikinase >gi|1865554... 23 9.5
pdb|2DIK|A Chain A, R337a Mutant Of Pyruvate Phosphate Diki... 23 9.5
pdb|1DIK| Pyruvate Phosphate Dikinase 23 9.5
pdb|1JDE|A Chain A, K22a Mutant Of Pyruvate, Phosphate Diki... 23 9.5
pdb|1GGO|A Chain A, T453a Mutant Of Pyruvate, Phosphate Dik... 23 9.5
>pdb|1EJ6|A Chain A, Reovirus Core
Length = 1289
Score = 23.1 bits (48), Expect = 7.3
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 7 SVFIGASLLGGCASVEAYFDALHVARVKDACL 38
+VF+ +L+G S +A++D L + + D +
Sbjct: 112 NVFVANALVGAFLSNQAFYDLLPLLIINDTMI 143
>pdb|1KTE| Crystal Structure Of Thioltransferase At 2.2 Angstrom Resolution
Length = 105
Score = 23.1 bits (48), Expect = 7.3
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 8 VFIGASLLGGCASVEA 23
VFIG +GGC +E+
Sbjct: 72 VFIGKECIGGCTDLES 87
>pdb|1KBL|A Chain A, Pyruvate Phosphate Dikinase
pdb|1KC7|A Chain A, Pyruvate Phosphate Dikinase With Bound
Mg-Phosphonopyruvate
Length = 873
Score = 22.7 bits (47), Expect = 9.5
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 6 NSVFIGASLLGGCASVEAYFDALHVARVKDACL 38
N+V +GA +G C + +F+A + +++ L
Sbjct: 547 NAVKLGAEGIGLCRTEHMFFEADRIMKIRKMIL 579
>pdb|2DIK|A Chain A, R337a Mutant Of Pyruvate Phosphate Dikinase
Length = 873
Score = 22.7 bits (47), Expect = 9.5
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 6 NSVFIGASLLGGCASVEAYFDALHVARVKDACL 38
N+V +GA +G C + +F+A + +++ L
Sbjct: 547 NAVKLGAEGIGLCRTEHMFFEADRIMKIRKMIL 579
>pdb|1DIK| Pyruvate Phosphate Dikinase
Length = 874
Score = 22.7 bits (47), Expect = 9.5
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 6 NSVFIGASLLGGCASVEAYFDALHVARVKDACL 38
N+V +GA +G C + +F+A + +++ L
Sbjct: 548 NAVKLGAEGIGLCRTEHMFFEADRIMKIRKMIL 580
>pdb|1JDE|A Chain A, K22a Mutant Of Pyruvate, Phosphate Dikinase
Length = 873
Score = 22.7 bits (47), Expect = 9.5
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 6 NSVFIGASLLGGCASVEAYFDALHVARVKDACL 38
N+V +GA +G C + +F+A + +++ L
Sbjct: 547 NAVKLGAEGIGLCRTEHMFFEADRIMKIRKMIL 579
>pdb|1GGO|A Chain A, T453a Mutant Of Pyruvate, Phosphate Dikinase
Length = 873
Score = 22.7 bits (47), Expect = 9.5
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 6 NSVFIGASLLGGCASVEAYFDALHVARVKDACL 38
N+V +GA +G C + +F+A + +++ L
Sbjct: 547 NAVKLGAEGIGLCRTEHMFFEADRIMKIRKMIL 579
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.328 0.138 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 179,812
Number of Sequences: 13198
Number of extensions: 3003
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 7
length of query: 38
length of database: 2,899,336
effective HSP length: 14
effective length of query: 24
effective length of database: 2,714,564
effective search space: 65149536
effective search space used: 65149536
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.7 bits)