BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644683|ref|NP_206853.1| hypothetical protein
[Helicobacter pylori 26695]
(330 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1EQO|A Chain A, Crystal Structure Of A Ternary Complex ... 29 0.65
pdb|1BWF|O Chain O, Escherichia Coli Glycerol Kinase Mutant... 28 1.4
pdb|1BU6|Y Chain Y, Crystal Structures Of Escherichia Coli ... 28 1.4
pdb|1BOT|Z Chain Z, Crystal Structure Of The Complex Betwee... 28 1.4
pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacteria... 27 4.2
pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding... 27 4.2
pdb|1UOR| X-Ray Study Of Recombinant Human Serum Albumin.... 26 5.5
pdb|1BKE| Human Serum Albumin In A Complex With Myristic ... 26 5.5
>pdb|1EQO|A Chain A, Crystal Structure Of A Ternary Complex Of
6-Hydroxymethyl-7, 8-Dihydropterin Pyrophosphokinase
From E. Coli With Mgampcpp And
6-Hydroxymethyl-7,8-Dihydropterin At 1.25 Angstrom
Resolution
pdb|1EQM|A Chain A, Crystal Structure Of Binary Complex Of
6-Hydroxymethyl-7,8- Dihydropterin Pyrophosphokinase
With Adenosine-5'- Diphosphate
pdb|1HKA| 6-Hydroxymethyl-7,8-Dihydropterin Pyrophosphokinase
pdb|1EX8|A Chain A, Crystal Structure Of 6-Hydroxymethyl-7,8-Dihydropterin
Pyrophosphokinase Complexed With Hp4a, The
Two-Substrate- Mimicking Inhibitor
pdb|1DY3|A Chain A, Ternary Complex Of
7,8-Dihydro-6-Hydroxymethylpterinpyrophosphokinase From
Escherichia Coli With Atp And A Substrate Analogue.
pdb|1EQ0|A Chain A, Solution Structure Of 6-Hydroxymethyl-7,8-Dihydropterin
Pyrophosphokinase Complexed With Mgamppcp
Length = 158
Score = 29.3 bits (64), Expect = 0.65
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 11/63 (17%)
Query: 266 SKIINLYRLSTPNVCSACCDDYDIKERSFLSLPLYQITQNPDSYYTEIHDFFRQNQRIRC 325
+++IN RL+ P+ YD+K R F+ PL++I P+ + + + RQ R
Sbjct: 103 NEVINTERLTVPH--------YDMKNRGFMLWPLFEIA--PELVFPD-GEMLRQILHTRA 151
Query: 326 FSK 328
F K
Sbjct: 152 FDK 154
>pdb|1BWF|O Chain O, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1BWF|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLL|O Chain O, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLL|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLJ|O Chain O, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLJ|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
Length = 501
Score = 28.1 bits (61), Expect = 1.4
Identities = 16/46 (34%), Positives = 24/46 (51%), Gaps = 3/46 (6%)
Query: 219 KYHGNSFTECAHFYLKNIYQQDLDDKSIEKL---REQLGFIQKSEE 261
+ H +T + L NI+ D DDK +E L RE L +++S E
Sbjct: 177 RVHVTDYTNASRTMLFNIHTLDWDDKMLEVLDIPREMLPEVRRSSE 222
>pdb|1BU6|Y Chain Y, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BU6|Z Chain Z, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BU6|X Chain X, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BU6|O Chain O, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
Length = 501
Score = 28.1 bits (61), Expect = 1.4
Identities = 16/46 (34%), Positives = 24/46 (51%), Gaps = 3/46 (6%)
Query: 219 KYHGNSFTECAHFYLKNIYQQDLDDKSIEKL---REQLGFIQKSEE 261
+ H +T + L NI+ D DDK +E L RE L +++S E
Sbjct: 177 RVHVTDYTNASRTMLFNIHTLDWDDKMLEVLDIPREMLPEVRRSSE 222
>pdb|1BOT|Z Chain Z, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6- Bisphosphate.
pdb|1BOT|O Chain O, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6- Bisphosphate.
pdb|1GLF|O Chain O, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1GLF|Y Chain Y, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1GLF|X Chain X, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1GLF|Z Chain Z, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BO5|Z Chain Z, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6- Bisphosphate.
pdb|1BO5|O Chain O, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6- Bisphosphate.
pdb|1GLB|G Chain G, Glycerol Kinase (E.C.2.7.1.30) Complex With Glycerol, Adp,
And The (Escherichia Coli) Glucose-Specific Factor Iii
(Iii-Glc)
pdb|1GLA|G Chain G, Glycerol Kinase (E.C.2.7.1.30) Complex With Glycerol And
The (Escherichia Coli) Glucose-Specific Factor Iii
(Iii-Glc)
pdb|1GLC|G Chain G, Glycerol Kinase (E.C.2.7.1.30) Complexed With The
(Escherichia Coli) Glucose-Specific Factor Iii
(Iii-Glc), Glycerol-3-Phosphate, Adenosine Diphosphate,
Mg(Ii) And Zn(Ii)
pdb|1GLD|G Chain G, Glycerol Kinase (E.C.2.7.1.30) Complexed With The
(Escherichia Coli) Glucose-Specific Factor Iii
(Iii-Glc), Glycerol-3-Phosphate, Adenosine Diphosphate
And Mn(Ii)
pdb|1GLE|G Chain G, Glycerol Kinase (E.C.2.7.1.30) Complexed With The
(Escherichia Coli) Glucose-Specific Factor Iii
(Iii-Glc), Glycerol-3-Phosphate, Adenosine Diphosphate
And Zn(Ii)
Length = 501
Score = 28.1 bits (61), Expect = 1.4
Identities = 16/46 (34%), Positives = 24/46 (51%), Gaps = 3/46 (6%)
Query: 219 KYHGNSFTECAHFYLKNIYQQDLDDKSIEKL---REQLGFIQKSEE 261
+ H +T + L NI+ D DDK +E L RE L +++S E
Sbjct: 177 RVHVTDYTNASRTMLFNIHTLDWDDKMLEVLDIPREMLPEVRRSSE 222
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 26.6 bits (57), Expect = 4.2
Identities = 11/26 (42%), Positives = 18/26 (68%), Gaps = 1/26 (3%)
Query: 232 YLKNIYQQDLDDKSIEKL-REQLGFI 256
Y+ NI DLDD + K+ R+++GF+
Sbjct: 63 YIDNIKTNDLDDDELTKIRRDKIGFV 88
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 26.6 bits (57), Expect = 4.2
Identities = 11/26 (42%), Positives = 18/26 (68%), Gaps = 1/26 (3%)
Query: 232 YLKNIYQQDLDDKSIEKL-REQLGFI 256
Y+ NI DLDD + K+ R+++GF+
Sbjct: 63 YIDNIKTNDLDDDELTKIRRDKIGFV 88
>pdb|1UOR| X-Ray Study Of Recombinant Human Serum Albumin. Phases Determined
By Molecular Replacement Method, Using Low Resolution
Structure Model Of Tetragonal Form Of Human Serum
Albumin
pdb|1AO6|A Chain A, Crystal Structure Of Human Serum Albumin
pdb|1AO6|B Chain B, Crystal Structure Of Human Serum Albumin
pdb|1BM0|A Chain A, Crystal Structure Of Human Serum Albumin
pdb|1BM0|B Chain B, Crystal Structure Of Human Serum Albumin
pdb|1H9Z|A Chain A, Human Serum Albumin Complexed With Myristic Acid And The
R-(+) Enantiomer Of Warfarin
pdb|1HA2|A Chain A, Human Serum Albumin Complexed With Myristic Acid And The
S- (-) Enantiomer Of Warfarin
pdb|1GNJ|A Chain A, Human Serum Albumin Complexed With
Cis-5,8,11,14-Eicosatetraenoic Acid (Arachidonic Acid)
pdb|1GNI|A Chain A, Human Serum Albumin Complexed With Cis-9-Octadecenoic Acid
(Oleic Acid)
pdb|1E7A|B Chain B, Crystal Structure Of Human Serum Albumin Complexed With
The General Anesthetic Propofol
pdb|1E7A|A Chain A, Crystal Structure Of Human Serum Albumin Complexed With
The General Anesthetic Propofol
pdb|1E7G|A Chain A, Human Serum Albumin Complexed With Tetradecanoic Acid
(Myristic Acid) Human Serum Albumin Complexed With
Myristic Acid
pdb|1E7C|A Chain A, Human Serum Albumin Complexed With Myristic Acid And The
General Anesthetic Halothane
pdb|1BJ5| Human Serum Albumin Complexed With Myristic Acid
pdb|1E7I|A Chain A, Human Serum Albumin Complexed With Octadecanoic Acid
(Stearic Acid)
pdb|1E7E|A Chain A, Human Serum Albumin Complexed With Decanoic Acid (Capric
Acid)
pdb|1E7H|A Chain A, Human Serum Albumin Complexed With Hexadecanoic Acid
(Palmitic Acid)
pdb|1E7F|A Chain A, Human Serum Albumin Complexed With Dodecanoic Acid (Lauric
Acid)
pdb|1E78|A Chain A, Crystal Structure Of Human Serum Albumin
pdb|1E7B|A Chain A, Crystal Structure Of Human Serum Albumin Complexed With
The General Anesthetic Halothane
pdb|1E78|B Chain B, Crystal Structure Of Human Serum Albumin
pdb|1E7B|B Chain B, Crystal Structure Of Human Serum Albumin Complexed With
The General Anesthetic Halothane
Length = 585
Score = 26.2 bits (56), Expect = 5.5
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 270 NLYRLSTPNVCSACCDDYDIKERSFLSLPLYQITQNPDSYYTEIHDFFRQNQRIRCFSKS 329
NL RL P V C +D E +FL LY+I + +Y FF + + F++
Sbjct: 111 NLPRLVRPEVDVMCTAFHD-NEETFLKKYLYEIARRHPYFYAPELLFFAKRYK-AAFTEC 168
Query: 330 C 330
C
Sbjct: 169 C 169
>pdb|1BKE| Human Serum Albumin In A Complex With Myristic Acid And
Tri-Iodobenzoic Acid
Length = 581
Score = 26.2 bits (56), Expect = 5.5
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 270 NLYRLSTPNVCSACCDDYDIKERSFLSLPLYQITQNPDSYYTEIHDFFRQNQRIRCFSKS 329
NL RL P V C +D E +FL LY+I + +Y FF + + F++
Sbjct: 108 NLPRLVRPEVDVMCTAFHD-NEETFLKKYLYEIARRHPYFYAPELLFFAKRYK-AAFTEC 165
Query: 330 C 330
C
Sbjct: 166 C 166
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.324 0.139 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,977,152
Number of Sequences: 13198
Number of extensions: 81964
Number of successful extensions: 170
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 170
Number of HSP's gapped (non-prelim): 8
length of query: 330
length of database: 2,899,336
effective HSP length: 89
effective length of query: 241
effective length of database: 1,724,714
effective search space: 415656074
effective search space used: 415656074
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)