BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645142|ref|NP_207312.1| heat shock protein (hslV)
[Helicobacter pylori 26695]
(180 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1KYI|G Chain G, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfon... 190 7e-50
pdb|1HT1|A Chain A, Nucleotide-Dependent Conformational Cha... 161 4e-41
pdb|1NED|A Chain A, Crystal Structure Of Hslv (Clpq) At 3.8... 161 4e-41
pdb|1SBB|D Chain D, T-Cell Receptor Beta Chain Complexed Wi... 27 1.4
pdb|1GOZ|A Chain A, Structural Basis For The Altered T-Cell... 27 1.4
pdb|3SEB| Staphylococcal Enterotoxin B 27 1.4
pdb|1DXE|A Chain A, 2-Dehydro-3-Deoxy-Galactarate Aldolase ... 26 3.1
pdb|1I50|A Chain A, Rna Polymerase Ii Crystal Form Ii At 2.... 25 5.2
pdb|1LOX| Rabbit Reticulocyte 15-Lipoxygenase 25 5.2
pdb|1JI6|A Chain A, Crystal Structure Of The Insecticidal B... 25 6.8
pdb|1DXF|A Chain A, 2-Dehydro-3-Deoxy-Galactarate Aldolase ... 25 6.8
pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragm... 24 8.9
pdb|1QPO|A Chain A, Quinolinate Phosphoribosyl Transferase ... 24 8.9
pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexe... 24 8.9
pdb|1L8R|A Chain A, Structure Of The Retinal Determination ... 24 8.9
>pdb|1KYI|G Chain G, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|H Chain H, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|I Chain I, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|J Chain J, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|K Chain K, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|L Chain L, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|M Chain M, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|N Chain N, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|O Chain O, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|P Chain P, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|Q Chain Q, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|R Chain R, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1JJW|C Chain C, Structure Of Haemophilus Influenzae Hslv Protein At 1.9 A
Resolution
pdb|1G3I|I Chain I, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|L Chain L, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3K|C Chain C, Crystal Structure Of The H. Influenzae Protease Hslv At
1.9 A Resolution
pdb|1JJW|B Chain B, Structure Of Haemophilus Influenzae Hslv Protein At 1.9 A
Resolution
pdb|1G3I|G Chain G, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|H Chain H, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|J Chain J, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|K Chain K, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3K|A Chain A, Crystal Structure Of The H. Influenzae Protease Hslv At
1.9 A Resolution
pdb|1G3K|B Chain B, Crystal Structure Of The H. Influenzae Protease Hslv At
1.9 A Resolution
pdb|1JJW|A Chain A, Structure Of Haemophilus Influenzae Hslv Protein At 1.9 A
Resolution
pdb|1G3I|M Chain M, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|N Chain N, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|Q Chain Q, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|O Chain O, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|P Chain P, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|R Chain R, Crystal Structure Of The Hsluv Protease-Chaperone Complex
Length = 174
Score = 190 bits (483), Expect = 7e-50
Identities = 92/160 (57%), Positives = 126/160 (78%)
Query: 21 LIGGDGQVTLGNCVVKANATKIRSLYHNQVLSGFAGSTADAFSLFDMFERILESKKGDLF 80
++GGDGQV+LGN V+K NA K+R LY+ +VL+GFAG TADAF+LF++FER LE +G L
Sbjct: 13 VVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQGHLL 72
Query: 81 KSVVDFSKEWRKDKYLRRLEAMMIVLNFDHIFILSGMGDVLEAEDNKIAAIGSGGNYALS 140
KS V+ +K+WR D+ LR+LEAM+IV + I++G+GDV++ E+++I AIGSGGNYALS
Sbjct: 73 KSAVELAKDWRTDRALRKLEAMLIVADEKESLIITGIGDVVQPEEDQILAIGSGGNYALS 132
Query: 141 AARALDHFAHLEPRKLVEESLKIAGDLCIYTNTNIKILEL 180
AARAL L ++VE+SL+IAGD+C++TNTN I EL
Sbjct: 133 AARALVENTELSAHEIVEKSLRIAGDICVFTNTNFTIEEL 172
>pdb|1HT1|A Chain A, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HT1|B Chain B, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HT1|C Chain C, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HT1|D Chain D, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HT1|V Chain V, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HT1|X Chain X, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HT1|Y Chain Y, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HT1|Z Chain Z, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HT2|A Chain A, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HT2|B Chain B, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HT2|C Chain C, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HT2|D Chain D, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HT2|I Chain I, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HT2|J Chain J, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HT2|K Chain K, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HT2|L Chain L, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1E94|A Chain A, Hslv-Hslu From E.Coli
pdb|1E94|B Chain B, Hslv-Hslu From E.Coli
pdb|1E94|C Chain C, Hslv-Hslu From E.Coli
pdb|1E94|D Chain D, Hslv-Hslu From E.Coli
pdb|1HQY|A Chain A, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HQY|B Chain B, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HQY|C Chain C, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HQY|D Chain D, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1G4A|A Chain A, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|B Chain B, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|C Chain C, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|D Chain D, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|M Chain M, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|N Chain N, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|O Chain O, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|P Chain P, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
Length = 175
Score = 161 bits (408), Expect = 4e-41
Identities = 87/176 (49%), Positives = 120/176 (67%), Gaps = 5/176 (2%)
Query: 5 TTILGYRGELNHKKFALIGGDGQVTLGNCVVKANATKIRSLYHNQVLSGFAGSTADAFSL 64
TTI+ R +I GDGQ TLGN V+K N K+R LY+++V++GFAG TADAF+L
Sbjct: 1 TTIVSVR----RNGHVVIAGDGQATLGNTVMKGNVKKVRRLYNDKVIAGFAGGTADAFTL 56
Query: 65 FDMFERILESKKGDLFKSVVDFSKEWRKDKYLRRLEAMMIVLNFDHIFILSGMGDVLEAE 124
F++FER LE +G L K+ V+ +K+WR D+ LR+LEA++ V + I++G GDV++ E
Sbjct: 57 FELFERKLEMHQGHLVKAAVELAKDWRTDRMLRKLEALLAVADETASLIITGNGDVVQPE 116
Query: 125 DNKIAAIGSGGNYALSAARALDHFAHLEPRKLVEESLKIAGDLCIYTNTNIKILEL 180
N + AIGSGG YA +AARAL L R++ E++L IAGD+CIYTN I EL
Sbjct: 117 -NDLIAIGSGGPYAQAAARALLENTELSAREIAEKALDIAGDICIYTNHFHTIEEL 171
>pdb|1NED|A Chain A, Crystal Structure Of Hslv (Clpq) At 3.8 Angstroms
Resolution
pdb|1NED|B Chain B, Crystal Structure Of Hslv (Clpq) At 3.8 Angstroms
Resolution
pdb|1NED|C Chain C, Crystal Structure Of Hslv (Clpq) At 3.8 Angstroms
Resolution
Length = 183
Score = 161 bits (408), Expect = 4e-41
Identities = 87/176 (49%), Positives = 120/176 (67%), Gaps = 5/176 (2%)
Query: 5 TTILGYRGELNHKKFALIGGDGQVTLGNCVVKANATKIRSLYHNQVLSGFAGSTADAFSL 64
TTI+ R +I GDGQ TLGN V+K N K+R LY+++V++GFAG TADAF+L
Sbjct: 1 TTIVSVR----RNGHVVIAGDGQATLGNTVMKGNVKKVRRLYNDKVIAGFAGGTADAFTL 56
Query: 65 FDMFERILESKKGDLFKSVVDFSKEWRKDKYLRRLEAMMIVLNFDHIFILSGMGDVLEAE 124
F++FER LE +G L K+ V+ +K+WR D+ LR+LEA++ V + I++G GDV++ E
Sbjct: 57 FELFERKLEMHQGHLVKAAVELAKDWRTDRMLRKLEALLAVADETASLIITGNGDVVQPE 116
Query: 125 DNKIAAIGSGGNYALSAARALDHFAHLEPRKLVEESLKIAGDLCIYTNTNIKILEL 180
N + AIGSGG YA +AARAL L R++ E++L IAGD+CIYTN I EL
Sbjct: 117 -NDLIAIGSGGPYAQAAARALLENTELSAREIAEKALDIAGDICIYTNHFHTIEEL 171
>pdb|1SBB|D Chain D, T-Cell Receptor Beta Chain Complexed With Superantigen
Seb
pdb|1SE4| Staphylococcal Enterotoxin B Complexed With Lactose
pdb|1SE3| Staphylococcal Enterotoxin B Complexed With Gm3 Trisaccharide
pdb|1SBB|B Chain B, T-Cell Receptor Beta Chain Complexed With Superantigen
Seb
pdb|1D5Z|C Chain C, X-Ray Crystal Structure Of Hla-Dr4 Complexed With
Peptidomimetic And Seb
pdb|1D5M|C Chain C, X-Ray Crystal Structure Of Hla-Dr4 Complexed With
Peptide And Seb
pdb|1D5X|C Chain C, X-Ray Crystal Structure Of Hla-Dr4 Complexed With
Dipeptide Mimetic And Seb
pdb|1D6E|C Chain C, Crystal Structure Of Hla-Dr4 Complex With Peptidomimetic
And Seb
pdb|2SEB|D Chain D, X-Ray Crystal Structure Of Hla-Dr4 Complexed With A
Peptide From Human Collagen Ii
Length = 239
Score = 26.9 bits (58), Expect = 1.4
Identities = 15/54 (27%), Positives = 26/54 (47%)
Query: 42 IRSLYHNQVLSGFAGSTADAFSLFDMFERILESKKGDLFKSVVDFSKEWRKDKY 95
++ LY + +S + D F FD+ I ++K G+ V+F + DKY
Sbjct: 24 MKVLYDDNHVSAINVKSIDQFLYFDLIYSIKDTKLGNYDNVRVEFKNKDLADKY 77
>pdb|1GOZ|A Chain A, Structural Basis For The Altered T-Cell Receptor Binding
Specificty In A Superantigenic Staphylococcus Aureus
Enterotoxin-B Mutant
pdb|1GOZ|B Chain B, Structural Basis For The Altered T-Cell Receptor Binding
Specificty In A Superantigenic Staphylococcus Aureus
Enterotoxin-B Mutant
Length = 239
Score = 26.9 bits (58), Expect = 1.4
Identities = 15/54 (27%), Positives = 26/54 (47%)
Query: 42 IRSLYHNQVLSGFAGSTADAFSLFDMFERILESKKGDLFKSVVDFSKEWRKDKY 95
++ LY + +S + D F FD+ I ++K G+ V+F + DKY
Sbjct: 24 MKVLYDDNHVSAINVKSIDQFLYFDLIYSIKDTKLGNYDNVRVEFKNKDLADKY 77
>pdb|3SEB| Staphylococcal Enterotoxin B
Length = 238
Score = 26.9 bits (58), Expect = 1.4
Identities = 15/54 (27%), Positives = 26/54 (47%)
Query: 42 IRSLYHNQVLSGFAGSTADAFSLFDMFERILESKKGDLFKSVVDFSKEWRKDKY 95
++ LY + +S + D F FD+ I ++K G+ V+F + DKY
Sbjct: 24 MKVLYDDNHVSAINVKSIDQFLYFDLIYSIKDTKLGNYDNVRVEFKNKDLADKY 77
>pdb|1DXE|A Chain A, 2-Dehydro-3-Deoxy-Galactarate Aldolase From Escherichia
Coli
pdb|1DXE|B Chain B, 2-Dehydro-3-Deoxy-Galactarate Aldolase From Escherichia
Coli
Length = 256
Score = 25.8 bits (55), Expect = 3.1
Identities = 17/64 (26%), Positives = 31/64 (47%), Gaps = 1/64 (1%)
Query: 74 SKKGDLFKSVVDFSKEWRKD-KYLRRLEAMMIVLNFDHIFILSGMGDVLEAEDNKIAAIG 132
S + ++F +V D+ + K+ L ++E+ V N D I G+ + + AA+G
Sbjct: 126 SHRANMFGTVADYFAQSNKNITILVQIESQQGVDNVDAIAATEGVDGIFVGPSDLAAALG 185
Query: 133 SGGN 136
GN
Sbjct: 186 HLGN 189
>pdb|1I50|A Chain A, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
pdb|1I3Q|A Chain A, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
pdb|1I6H|A Chain A, Rna Polymerase Ii Elongation Complex
pdb|1K83|A Chain A, Crystal Structure Of Yeast Rna Polymerase Ii Complexed
With The Inhibitor Alpha Amanitin
Length = 1733
Score = 25.0 bits (53), Expect = 5.2
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 45 LYHNQVLSGFAGSTADAFSLFDMFERILESKKGDLFKSVVDFSKE 89
L HN +G + AD ++ ++ E I E+K K V+D +KE
Sbjct: 657 LLHNGFSTGIGDTIADGPTMREITETIAEAK-----KKVLDVTKE 696
>pdb|1LOX| Rabbit Reticulocyte 15-Lipoxygenase
Length = 662
Score = 25.0 bits (53), Expect = 5.2
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 10 YRGELNHKKFALIGGDGQVTLGNCV 34
Y G N + L+G G+V LG+C+
Sbjct: 14 YAGSKNKVELWLVGQHGEVELGSCL 38
>pdb|1JI6|A Chain A, Crystal Structure Of The Insecticidal Bacterial Del
Endotoxin Cry3bb1 Bacillus Thuringiensis
Length = 589
Score = 24.6 bits (52), Expect = 6.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 46 YHNQVLSGFAGSTADAFSLFDMFER 70
++N L+G GST DA+ F+ F R
Sbjct: 184 WYNVGLNGLRGSTYDAWVKFNRFRR 208
>pdb|1DXF|A Chain A, 2-Dehydro-3-Deoxy-Galactarate Aldolase From Escherichia
Coli In Complex With Pyruvate
pdb|1DXF|B Chain B, 2-Dehydro-3-Deoxy-Galactarate Aldolase From Escherichia
Coli In Complex With Pyruvate
Length = 256
Score = 24.6 bits (52), Expect = 6.8
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 74 SKKGDLFKSVVDFSKEWRKD-KYLRRLEAMMIVLNFDHIFILSGMGDVLEAEDNKIAAIG 132
S + + F +V D+ + K+ L ++E+ V N D I G+ + + AA+G
Sbjct: 126 SHRANXFGTVADYFAQSNKNITILVQIESQQGVDNVDAIAATEGVDGIFVGPSDLAAALG 185
Query: 133 SGGN 136
GN
Sbjct: 186 HLGN 189
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 24.3 bits (51), Expect = 8.9
Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 12/117 (10%)
Query: 33 CVVKANATKIRSLYHNQVLSGFAGSTADAFSLFDMFERILESKKGDLFKSVVDFSKEWRK 92
C++ ++ L+H + SG G +A A D+ + K+ +S + +
Sbjct: 193 CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPN 252
Query: 93 DKYLRRLEAMMIVLNFDHIFILSGMGDVLEAEDNKIAAIGSGGNYALSAARALDHFA 149
DK R ++ I+ N D +I++ M L A+D S G+ L+ A L + +
Sbjct: 253 DKNGERKDS--ILENLDLKWIIANM---LNAQD-------SNGDTCLNIAARLGNIS 297
>pdb|1QPO|A Chain A, Quinolinate Phosphoribosyl Transferase (Qaprtase) Apo-
Enzyme From Mycobacterium Tuberculosis
pdb|1QPO|B Chain B, Quinolinate Phosphoribosyl Transferase (Qaprtase) Apo-
Enzyme From Mycobacterium Tuberculosis
pdb|1QPO|C Chain C, Quinolinate Phosphoribosyl Transferase (Qaprtase) Apo-
Enzyme From Mycobacterium Tuberculosis
pdb|1QPO|D Chain D, Quinolinate Phosphoribosyl Transferase (Qaprtase) Apo-
Enzyme From Mycobacterium Tuberculosis
pdb|1QPO|E Chain E, Quinolinate Phosphoribosyl Transferase (Qaprtase) Apo-
Enzyme From Mycobacterium Tuberculosis
pdb|1QPO|F Chain F, Quinolinate Phosphoribosyl Transferase (Qaprtase) Apo-
Enzyme From Mycobacterium Tuberculosis
pdb|1QPR|A Chain A, Quinolinate Phosphoribosyltransferase (Qaprtase) From
Mycobacterium Tuberculosis In Complex With Phthalate And
Prpcp
pdb|1QPR|B Chain B, Quinolinate Phosphoribosyltransferase (Qaprtase) From
Mycobacterium Tuberculosis In Complex With Phthalate And
Prpcp
pdb|1QPR|C Chain C, Quinolinate Phosphoribosyltransferase (Qaprtase) From
Mycobacterium Tuberculosis In Complex With Phthalate And
Prpcp
pdb|1QPR|D Chain D, Quinolinate Phosphoribosyltransferase (Qaprtase) From
Mycobacterium Tuberculosis In Complex With Phthalate And
Prpcp
pdb|1QPR|E Chain E, Quinolinate Phosphoribosyltransferase (Qaprtase) From
Mycobacterium Tuberculosis In Complex With Phthalate And
Prpcp
pdb|1QPR|F Chain F, Quinolinate Phosphoribosyltransferase (Qaprtase) From
Mycobacterium Tuberculosis In Complex With Phthalate And
Prpcp
pdb|1QPQ|A Chain A, Structure Of Quinolinic Acid Phosphoribosyltransferase
From Mycobacterium Tuberculosis: A Potential Tb Drug
Target
pdb|1QPQ|B Chain B, Structure Of Quinolinic Acid Phosphoribosyltransferase
From Mycobacterium Tuberculosis: A Potential Tb Drug
Target
pdb|1QPQ|C Chain C, Structure Of Quinolinic Acid Phosphoribosyltransferase
From Mycobacterium Tuberculosis: A Potential Tb Drug
Target
pdb|1QPQ|D Chain D, Structure Of Quinolinic Acid Phosphoribosyltransferase
From Mycobacterium Tuberculosis: A Potential Tb Drug
Target
pdb|1QPQ|E Chain E, Structure Of Quinolinic Acid Phosphoribosyltransferase
From Mycobacterium Tuberculosis: A Potential Tb Drug
Target
pdb|1QPQ|F Chain F, Structure Of Quinolinic Acid Phosphoribosyltransferase
From Mycobacterium Tuberculosis: A Potential Tb Drug
Target
pdb|1QPN|A Chain A, Quinolinate Phosphoribosyl Transferase From Mycobacterium
Tuberculosis In Complex With Ncnn
pdb|1QPN|B Chain B, Quinolinate Phosphoribosyl Transferase From Mycobacterium
Tuberculosis In Complex With Ncnn
pdb|1QPN|C Chain C, Quinolinate Phosphoribosyl Transferase From Mycobacterium
Tuberculosis In Complex With Ncnn
pdb|1QPN|D Chain D, Quinolinate Phosphoribosyl Transferase From Mycobacterium
Tuberculosis In Complex With Ncnn
pdb|1QPN|E Chain E, Quinolinate Phosphoribosyl Transferase From Mycobacterium
Tuberculosis In Complex With Ncnn
pdb|1QPN|F Chain F, Quinolinate Phosphoribosyl Transferase From Mycobacterium
Tuberculosis In Complex With Ncnn
Length = 284
Score = 24.3 bits (51), Expect = 8.9
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 116 GMGDVLEAEDNKIAAIGSGGNYALSAARALDHFAHLEPRKLVEESLK 162
G+GD +DN +AA GS + A RA+ + A P ++ +SL+
Sbjct: 163 GLGDAALIKDNHVAAAGS----VVDALRAVRNAAPDLPCEVEVDSLE 205
>pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
pdb|1EBD|B Chain B, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
Length = 455
Score = 24.3 bits (51), Expect = 8.9
Identities = 31/129 (24%), Positives = 52/129 (40%), Gaps = 14/129 (10%)
Query: 9 GYRGELNHKKFALIGGDGQVTLGNCVVKANATKIRSL-YHNQVLSGFAGSTADAFSLFDM 67
G G L K ++ G+ N V N ++ + N +++ GS F
Sbjct: 96 GVEGLLKGNKVEIVKGEAYFVDANTVRVVNGDSAQTYTFKNAIIA--TGSRPIELPNFKF 153
Query: 68 FERILES----KKGDLFKSVVDFSKEWRKDKYLRRLEAMMIVLNFD-HIFILSGMGDVLE 122
RIL+S G++ KS+V + +E NF + IL G G++L
Sbjct: 154 SNRILDSTGALNLGEVPKSLVVIGGGYIG------IELGTAYANFGTKVTILEGAGEILS 207
Query: 123 AEDNKIAAI 131
+ ++AAI
Sbjct: 208 GFEKQMAAI 216
>pdb|1L8R|A Chain A, Structure Of The Retinal Determination Protein Dachshund
Reveals A Dna-Binding Motif
pdb|1L8R|B Chain B, Structure Of The Retinal Determination Protein Dachshund
Reveals A Dna-Binding Motif
Length = 101
Score = 24.3 bits (51), Expect = 8.9
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 96 LRRLEAMMIVLNFDHIFILSGMGDV 120
L+RLE +V N + + IL G+G +
Sbjct: 52 LKRLEITPVVCNVEQVRILRGLGAI 76
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.322 0.139 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 991,161
Number of Sequences: 13198
Number of extensions: 37565
Number of successful extensions: 108
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 97
Number of HSP's gapped (non-prelim): 15
length of query: 180
length of database: 2,899,336
effective HSP length: 82
effective length of query: 98
effective length of database: 1,817,100
effective search space: 178075800
effective search space used: 178075800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)