BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645143|ref|NP_207313.1| heat shock protein (hslU)
ORF1 [Helicobacter pylori 26695]
(443 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptida... 410 e-115
pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Loc... 410 e-115
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Cha... 410 e-115
pdb|1KYI|A Chain A, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfon... 399 e-112
pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomet... 387 e-108
pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Ch... 50 5e-07
pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Do... 44 5e-05
pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Do... 44 5e-05
pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of ... 42 2e-04
pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyos... 37 0.003
pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Co... 34 0.029
pdb|1JVN|A Chain A, Crystal Structure Of Imidazole Glycerol... 30 0.71
pdb|1BIF| 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphospha... 30 0.71
pdb|2BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bi... 30 0.71
pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And ... 30 0.71
pdb|1JSQ|A Chain A, Structure Of Msba From Escherichia Coli... 30 0.71
pdb|3BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bi... 30 0.71
pdb|1SHK|A Chain A, The Three-Dimensional Structure Of Shik... 29 0.93
pdb|1SHK|B Chain B, The Three-Dimensional Structure Of Shik... 29 0.93
pdb|2SHK|B Chain B, The Three-Dimensional Structure Of Shik... 29 0.93
pdb|1DKG|D Chain D, Crystal Structure Of The Nucleotide Exc... 29 1.2
pdb|1IK3|A Chain A, Lipoxygenase-3 (Soybean) Complex With 1... 28 1.6
pdb|1DN1|B Chain B, Crystal Structure Of The Neuronal-Sec1S... 28 2.1
pdb|1E6J|P Chain P, Crystal Structure Of Hiv-1 Capsid Prote... 28 2.1
pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive... 28 2.7
pdb|1CZ3|B Chain B, Dihydrofolate Reductase From Thermotoga... 28 2.7
pdb|1NSF| D2 Hexamerization Domain Of N-Ethylmaleimide Se... 28 2.7
pdb|1FBN|A Chain A, Crystal Structure Of A Fibrillarin Homo... 28 2.7
pdb|1FUG|A Chain A, S-Adenosylmethionine Synthetase >gi|182... 28 2.7
pdb|1GGQ|A Chain A, Outer Surface Protein C (Ospc) Of Borre... 27 3.5
pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor >gi|1697482... 27 4.6
pdb|1E6C|A Chain A, K15m Mutant Of Shikimate Kinase From Er... 27 4.6
pdb|1XRB| S-Adenosylmethionine Synthetase (Mat, Atp: L-Me... 27 4.6
pdb|1B3U|A Chain A, Crystal Structure Of Constant Regulator... 27 6.0
pdb|1BAJ| Hiv-1 Capsid Protein C-Terminal Fragment Plus G... 27 6.0
pdb|1A43| Structure Of The Hiv-1 Capsid Protein Dimerizat... 27 6.0
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Co... 26 7.9
pdb|1JR3|A Chain A, Crystal Structure Of The Processivity C... 26 7.9
pdb|1KHO|A Chain A, Crystal Structure Analysis Of Clostridi... 26 7.9
pdb|1GKI|A Chain A, Plasmid Coupling Protein Trwb In Comple... 26 7.9
pdb|1JBK|A Chain A, Crystal Structure Of The First Nuceloti... 26 7.9
pdb|1GL6|A Chain A, Plasmid Coupling Protein Trwb In Comple... 26 7.9
>pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
Length = 443
Score = 410 bits (1055), Expect = e-115
Identities = 214/442 (48%), Positives = 311/442 (69%), Gaps = 6/442 (1%)
Query: 6 MTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGVGK 65
MTPREIV+ LD++IIGQ AK+S+AIA RNR+RR+QL + L+ E+TPKNILMIG TGVGK
Sbjct: 4 MTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63
Query: 66 TEIARRIAKIMELPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKDKI 125
TEIARR+AK+ PF+KVEA+K+TEVG+VG++V+S++RDL + +V +V + EK + +
Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRA 123
Query: 126 EEAVIEKIAKKLLPPLPNGVSE-EKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKSIE 184
EE E+I L+PP N + E++QE + + ++++ +G+LD +EIEI++ +
Sbjct: 124 EELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMG 183
Query: 185 IDSNVPPEILRVQENLIKVFHK---EQDKVKKTLSVKEAKEALKAEISDTLLDSEAIKME 241
++ PP + + L +F ++ K +K L +K+A + L E + L++ E +K +
Sbjct: 184 VEIMAPPGMEEMTSQLQSMFQNLGGQKQKARK-LKIKDAMKLLIEEEAAKLVNPEELKQD 242
Query: 242 GLKRAESSGVIFIDEIDKIAVSSKEGSRQDPSKEGVQRDLLPIVEGSVVNTKYGSIKTEH 301
+ E G++FIDEIDKI E S D S+EGVQRDLLP+VEG V+TK+G +KT+H
Sbjct: 243 AIDAVEQHGIVFIDEIDKICKRG-ESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301
Query: 302 ILFIAAGAFHLSKPSDLIPELQGRFPLRVELENLTEEIMYMILTQTKTSIIKQYQALLKV 361
ILFIA+GAF ++KPSDLIPELQGR P+RVEL+ LT ILT+ SI QY+AL+
Sbjct: 302 ILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMAT 361
Query: 362 EGVEIAFEDDAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQNVTIT 421
EGV I F D IK +A+ ++ N+ +E+IGARRLHT +E+++E+IS++A D SGQN+TI
Sbjct: 362 EGVNIEFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQNITID 421
Query: 422 KELVQSKLEDLVADENLVKYIL 443
+ V L+ LVADE+L ++IL
Sbjct: 422 ADYVSKHLDALVADEDLSRFIL 443
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 410 bits (1055), Expect = e-115
Identities = 214/442 (48%), Positives = 311/442 (69%), Gaps = 6/442 (1%)
Query: 6 MTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGVGK 65
MTPREIV+ LD++IIGQ AK+S+AIA RNR+RR+QL + L+ E+TPKNILMIG TGVGK
Sbjct: 3 MTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 62
Query: 66 TEIARRIAKIMELPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKDKI 125
TEIARR+AK+ PF+KVEA+K+TEVG+VG++V+S++RDL + +V +V + EK + +
Sbjct: 63 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRA 122
Query: 126 EEAVIEKIAKKLLPPLPNGVSE-EKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKSIE 184
EE E+I L+PP N + E++QE + + ++++ +G+LD +EIEI++ +
Sbjct: 123 EELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMG 182
Query: 185 IDSNVPPEILRVQENLIKVFHK---EQDKVKKTLSVKEAKEALKAEISDTLLDSEAIKME 241
++ PP + + L +F ++ K +K L +K+A + L E + L++ E +K +
Sbjct: 183 VEIMAPPGMEEMTSQLQSMFQNLGGQKQKARK-LKIKDAMKLLIEEEAAKLVNPEELKQD 241
Query: 242 GLKRAESSGVIFIDEIDKIAVSSKEGSRQDPSKEGVQRDLLPIVEGSVVNTKYGSIKTEH 301
+ E G++FIDEIDKI E S D S+EGVQRDLLP+VEG V+TK+G +KT+H
Sbjct: 242 AIDAVEQHGIVFIDEIDKICKRG-ESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 300
Query: 302 ILFIAAGAFHLSKPSDLIPELQGRFPLRVELENLTEEIMYMILTQTKTSIIKQYQALLKV 361
ILFIA+GAF ++KPSDLIPELQGR P+RVEL+ LT ILT+ SI QY+AL+
Sbjct: 301 ILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMAT 360
Query: 362 EGVEIAFEDDAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQNVTIT 421
EGV I F D IK +A+ ++ N+ +E+IGARRLHT +E+++E+IS++A D SGQN+TI
Sbjct: 361 EGVNIEFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQNITID 420
Query: 422 KELVQSKLEDLVADENLVKYIL 443
+ V L+ LVADE+L ++IL
Sbjct: 421 ADYVSKHLDALVADEDLSRFIL 442
>pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HT2|E Chain E, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
Length = 449
Score = 410 bits (1055), Expect = e-115
Identities = 214/442 (48%), Positives = 311/442 (69%), Gaps = 6/442 (1%)
Query: 6 MTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGVGK 65
MTPREIV+ LD++IIGQ AK+S+AIA RNR+RR+QL + L+ E+TPKNILMIG TGVGK
Sbjct: 10 MTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 69
Query: 66 TEIARRIAKIMELPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKDKI 125
TEIARR+AK+ PF+KVEA+K+TEVG+VG++V+S++RDL + +V +V + EK + +
Sbjct: 70 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRA 129
Query: 126 EEAVIEKIAKKLLPPLPNGVSE-EKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKSIE 184
EE E+I L+PP N + E++QE + + ++++ +G+LD +EIEI++ +
Sbjct: 130 EELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMG 189
Query: 185 IDSNVPPEILRVQENLIKVFHK---EQDKVKKTLSVKEAKEALKAEISDTLLDSEAIKME 241
++ PP + + L +F ++ K +K L +K+A + L E + L++ E +K +
Sbjct: 190 VEIMAPPGMEEMTSQLQSMFQNLGGQKQKARK-LKIKDAMKLLIEEEAAKLVNPEELKQD 248
Query: 242 GLKRAESSGVIFIDEIDKIAVSSKEGSRQDPSKEGVQRDLLPIVEGSVVNTKYGSIKTEH 301
+ E G++FIDEIDKI E S D S+EGVQRDLLP+VEG V+TK+G +KT+H
Sbjct: 249 AIDAVEQHGIVFIDEIDKICKRG-ESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 307
Query: 302 ILFIAAGAFHLSKPSDLIPELQGRFPLRVELENLTEEIMYMILTQTKTSIIKQYQALLKV 361
ILFIA+GAF ++KPSDLIPELQGR P+RVEL+ LT ILT+ SI QY+AL+
Sbjct: 308 ILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMAT 367
Query: 362 EGVEIAFEDDAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQNVTIT 421
EGV I F D IK +A+ ++ N+ +E+IGARRLHT +E+++E+IS++A D SGQN+TI
Sbjct: 368 EGVNIEFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQNITID 427
Query: 422 KELVQSKLEDLVADENLVKYIL 443
+ V L+ LVADE+L ++IL
Sbjct: 428 ADYVSKHLDALVADEDLSRFIL 449
>pdb|1KYI|A Chain A, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
Length = 444
Score = 399 bits (1024), Expect = e-112
Identities = 209/442 (47%), Positives = 312/442 (70%), Gaps = 5/442 (1%)
Query: 6 MTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGVGK 65
MTPREIV+ LD++IIGQ +AK+++AIA RNR+RR+QL++ L+ E+TPKNILMIG TGVGK
Sbjct: 4 MTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGK 63
Query: 66 TEIARRIAKIMELPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKDKI 125
TEIARR+AK+ PF+KVEA+K+TEVG+VG++V+S++RDL ++++ LV + K + +
Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARA 123
Query: 126 EEAVIEKIAKKLLPPLPNGVSE-EKKQEYANSLLKMQQRIAQGELDSREIEIEVRKK-SI 183
E+ E+I LLPP N E E ++++ ++++ +G+LD +EIEI+V S+
Sbjct: 124 EDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSM 183
Query: 184 EIDSNVPPEILRVQENLIKVFHK-EQDKVKKT-LSVKEAKEALKAEISDTLLDSEAIKME 241
++ PP + + L +F DK KK + +K+A +AL + + L++ E +K +
Sbjct: 184 GVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQK 243
Query: 242 GLKRAESSGVIFIDEIDKIAVSSKEGSRQDPSKEGVQRDLLPIVEGSVVNTKYGSIKTEH 301
+ E +G++FIDEIDKI E S D S+EGVQRDLLP+VEGS V+TK+G +KT+H
Sbjct: 244 AIDAVEQNGIVFIDEIDKICKKG-EYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDH 302
Query: 302 ILFIAAGAFHLSKPSDLIPELQGRFPLRVELENLTEEIMYMILTQTKTSIIKQYQALLKV 361
ILFIA+GAF +++PSDLIPELQGR P+RVEL L+ ILT+ S+ +QY+AL+
Sbjct: 303 ILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMAT 362
Query: 362 EGVEIAFEDDAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQNVTIT 421
EGV IAF DA+K++A+ ++ N+K+E+IGARRLHT +E++++ ISF A D +GQ V I
Sbjct: 363 EGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNID 422
Query: 422 KELVQSKLEDLVADENLVKYIL 443
V L ++V +E+L ++IL
Sbjct: 423 AAYVADALGEVVENEDLSRFIL 444
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 387 bits (994), Expect = e-108
Identities = 210/443 (47%), Positives = 301/443 (67%), Gaps = 9/443 (2%)
Query: 7 TPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGVGKT 66
TPREIV+ LD++IIGQ +AK+++AIA RNR+RR QL++ L+ E+TPKNIL IG TGVGKT
Sbjct: 5 TPREIVSELDQHIIGQADAKRAVAIALRNRWRRXQLQEPLRHEVTPKNILXIGPTGVGKT 64
Query: 67 EIARRIAKIMELPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKDKIE 126
EIARR+AK+ PF+KVEA+K+TEVG+VG++V+S++RDL +++ LV + K + + E
Sbjct: 65 EIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAXKLVRQQEIAKNRARAE 124
Query: 127 EAVIEKIAKKLLPPLPNGVSE-EKKQEYANSLLKMQQRIAQGELDSREIEIEVRKK-SIE 184
+ E+I LLPP N E E ++++ ++++ +G+LD +EIEI+V S
Sbjct: 125 DVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSXG 184
Query: 185 IDSNVPPEILRVQENLIKVFHK-EQDKVKKTLSVKEAKEALKAEISDT---LLDSEAIKM 240
++ PP L +F DK KK + K+ALKA I D L++ E +K
Sbjct: 185 VEIXAPPGXEEXTNQLQSLFQNLGSDKTKKRKX--KIKDALKALIDDEAAKLINPEELKQ 242
Query: 241 EGLKRAESSGVIFIDEIDKIAVSSKEGSRQDPSKEGVQRDLLPIVEGSVVNTKYGSIKTE 300
+ + E +G++FIDEIDKI E S D S+EGVQRDLLP+VEGS V+TK+G +KT+
Sbjct: 243 KAIDAVEQNGIVFIDEIDKICKKG-EYSGADVSREGVQRDLLPLVEGSTVSTKHGXVKTD 301
Query: 301 HILFIAAGAFHLSKPSDLIPELQGRFPLRVELENLTEEIMYMILTQTKTSIIKQYQALLK 360
HILFIA+GAF +++PSDLIPELQGR P+RVEL L+ ILT+ S+ +QY+AL
Sbjct: 302 HILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALXA 361
Query: 361 VEGVEIAFEDDAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQNVTI 420
EGV IAF DA+K++A+ ++ N+K+E+IGARRLHT E++ + ISF A D +GQ V I
Sbjct: 362 TEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVXERLXDKISFSASDXNGQTVNI 421
Query: 421 TKELVQSKLEDLVADENLVKYIL 443
V L ++V +E+L ++IL
Sbjct: 422 DAAYVADALGEVVENEDLSRFIL 444
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
Length = 758
Score = 50.1 bits (118), Expect = 5e-07
Identities = 50/201 (24%), Positives = 89/201 (43%), Gaps = 32/201 (15%)
Query: 54 NILMIGSTGVGKTEIARRIAKIMELPFVKVEASKYTE-----------VGFVGRDVESMV 102
+ L G TGVGKTE+ +++K + + ++ + S+Y E G+VG D ++
Sbjct: 490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLL 549
Query: 103 RDLVNNSVLLVENEHKEKLKDKIEEAVIEKIAKKLLPPLPNGV---SEEKKQEYANSLLK 159
D V +++ H L D+IE+A + + LL + NG + +K ++ N +L
Sbjct: 550 TDAV------IKHPHAVLLLDEIEKAHPD-VFNILLQVMDNGTLTDNNGRKADFRNVVLV 602
Query: 160 MQQRIAQGELDSREIEIEVRKKSI----EIDSNVPPEILRVQENLI-------KVFHKEQ 208
M E + + I + + S EI PE +N+I V H+
Sbjct: 603 MTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVV 662
Query: 209 DKVKKTLSVKEAKEALKAEIS 229
DK L V+ ++ + E+S
Sbjct: 663 DKFIVELQVQLDQKGVSLEVS 683
Score = 30.8 bits (68), Expect = 0.32
Identities = 80/350 (22%), Positives = 135/350 (37%), Gaps = 76/350 (21%)
Query: 5 NMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGVG 64
N+ V +D I +KE +++I + R R N L++G +GVG
Sbjct: 175 NLNQLARVGGIDPLIGREKELERAIQVLCRRR---------------KNNPLLVGESGVG 219
Query: 65 KTEIARRIA-KIM--ELPFVKVEASKYT-EVGFV------GRDVESMVRDLV------NN 108
KT IA +A +I+ ++P V + + Y+ ++G + D E + L+ N
Sbjct: 220 KTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTN 279
Query: 109 SVLLVENEHKEKLKDKIEEAVIEKIAKKLLPPLPNG-----VSEEKKQEYANSLLKMQQR 163
S+L ++ H ++ A L+ PL + + QE++N K
Sbjct: 280 SILFIDEIHTIIGAGAASGGQVD--AANLIKPLLSSGKIRVIGSTTYQEFSNIFEK---- 333
Query: 164 IAQGELDSREIEIEVRKKSIEIDSNVPPEILRVQENLIKVFHKEQDKVKKTLSVKEAKEA 223
L R +I++ + SIE E +++ L + D +V+ A E
Sbjct: 334 --DRALARRFQKIDITEPSIE-------ETVQIINGLKPKYEAHHDVRYTAKAVRAAVEL 384
Query: 224 LKAEISDTLLDSEAIK-----------MEGLKRAESSGVIFIDE-IDKIA-VSSKEGSRQ 270
I+D L +AI M KR ++ V I+ + +IA + K S+
Sbjct: 385 AVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQS 444
Query: 271 DPSKEGVQRDLLPIVEGSVVNTKYGSIK-----TEHILFIAAGAFHLSKP 315
D RD L + + +G K TE I AG H KP
Sbjct: 445 D-------RDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKP 487
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 43.5 bits (101), Expect = 5e-05
Identities = 31/90 (34%), Positives = 47/90 (51%), Gaps = 10/90 (11%)
Query: 19 IIGQKEAK---KSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGVGKTEIARRIAKI 75
+ G +EAK K I +N R ++ + PK +L++G GVGKT +AR +A
Sbjct: 42 VAGAEEAKEELKEIVEFLKNPSRFHEMGARI-----PKGVLLVGPPGVGKTHLARAVAGE 96
Query: 76 MELPFVKVEASKYTEVGFVGRDVESMVRDL 105
+PF+ S + E+ FVG + VRDL
Sbjct: 97 ARVPFITASGSDFVEM-FVGVGA-ARVRDL 124
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 43.5 bits (101), Expect = 5e-05
Identities = 31/90 (34%), Positives = 47/90 (51%), Gaps = 10/90 (11%)
Query: 19 IIGQKEAK---KSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGVGKTEIARRIAKI 75
+ G +EAK K I +N R ++ + PK +L++G GVGKT +AR +A
Sbjct: 18 VAGAEEAKEELKEIVEFLKNPSRFHEMGARI-----PKGVLLVGPPGVGKTHLARAVAGE 72
Query: 76 MELPFVKVEASKYTEVGFVGRDVESMVRDL 105
+PF+ S + E+ FVG + VRDL
Sbjct: 73 ARVPFITASGSDFVEM-FVGVGA-ARVRDL 100
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 41.6 bits (96), Expect = 2e-04
Identities = 32/89 (35%), Positives = 48/89 (52%), Gaps = 8/89 (8%)
Query: 19 IIGQKEAKKSIA--IAFRNRYRRLQLEKSLQEEITPKNILMIGSTGVGKTEIARRIAKIM 76
+ G EAK+ +A + + R Q L +I PK +LM+G G GKT +A+ IA
Sbjct: 14 VAGCDEAKEEVAELVEYLREPSRFQ---KLGGKI-PKGVLMVGPPGTGKTLLAKAIAGEA 69
Query: 77 ELPFVKVEASKYTEVGFVGRDVESMVRDL 105
++PF + S + E+ FVG S VRD+
Sbjct: 70 KVPFFTISGSDFVEM-FVGVGA-SRVRDM 96
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 37.4 bits (85), Expect = 0.003
Identities = 63/260 (24%), Positives = 108/260 (41%), Gaps = 42/260 (16%)
Query: 10 EIVAYLDEYIIGQKEAKKSI-AIAFRNRYRRLQLEKSLQEEITPKNILMIGS-TGVGKTE 67
EI+ ++ I ++E + + A + + + L LE+ L+EE + L + T GK +
Sbjct: 927 EILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIK 986
Query: 68 IARRIAKIMELPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEK----LKD 123
IME K+ + + +E V DL N L E E K K LK+
Sbjct: 987 KMEDDILIMEDQNNKLTKER--------KLLEERVSDLTTN---LAEEEEKAKNLTKLKN 1035
Query: 124 KIEEAVIEKIAKKLLPPLPNGVSEEKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKSI 183
K E + E + E+ K++ + ++IA+ + E++ ++ KK
Sbjct: 1036 KHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEE 1095
Query: 184 EIDS--------------------NVPPEILRVQENLI--KVFHKEQDKVKKTLSVKEAK 221
E+ + + I +QE+L K + +K K+ LS E
Sbjct: 1096 ELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLS--EEL 1153
Query: 222 EALKAEISDTLLDSEAIKME 241
EALK E+ DT LD+ A + E
Sbjct: 1154 EALKTELEDT-LDTTATQQE 1172
>pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
pdb|1KAG|B Chain B, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
Length = 173
Score = 34.3 bits (77), Expect = 0.029
Identities = 37/178 (20%), Positives = 75/178 (41%), Gaps = 33/178 (18%)
Query: 53 KNILMIGSTGVGKTEIARRIAKIMELPFV----KVEASKYTEVGFVGRDVESMVRDLVNN 108
+NI ++G G GK+ I R++A+ + + F ++E +VG+V
Sbjct: 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADVGWV-------------- 50
Query: 109 SVLLVENEHKEKLKDKIEEAVIEKIAKKLLPPLPNGVSEEKKQEYANSL----------L 158
+ E +E +D+ EE VI ++ +K L G K +E N L
Sbjct: 51 ----FDLEGEEGFRDR-EEKVINELTEKQGIVLATGGGSVKSRETRNRLSARGVVVYLET 105
Query: 159 KMQQRIAQGELDSREIEIEVRKKSIEIDSNVPPEILRVQENLIKVFHKEQDKVKKTLS 216
+++++A+ + D + + V E+ + E + E + V + D+ K ++
Sbjct: 106 TIEKQLARTQRDKKRPLLHVETPPREVLEALANERNPLYEEIADVTIRTDDQSAKVVA 163
>pdb|1JVN|A Chain A, Crystal Structure Of Imidazole Glycerol Phosphate
Synthase: A Tunnel Through A (BetaALPHA)8 BARREL JOINS
TWO ACTIVE Sites
pdb|1JVN|B Chain B, Crystal Structure Of Imidazole Glycerol Phosphate
Synthase: A Tunnel Through A (BetaALPHA)8 BARREL JOINS
TWO ACTIVE Sites
Length = 555
Score = 29.6 bits (65), Expect = 0.71
Identities = 23/77 (29%), Positives = 34/77 (43%), Gaps = 13/77 (16%)
Query: 82 KVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKDKIEEAVIEKIAKKLLPPL 141
K+ +KY F+ VN + + H EK K VIE K+ PP+
Sbjct: 170 KIAKAKYGSEEFIAA---------VNKNNIFATQFHPEK-SGKAGLNVIENFLKQQSPPI 219
Query: 142 PNGVSEEKK---QEYAN 155
PN +EEK+ +Y+N
Sbjct: 220 PNYSAEEKELLMNDYSN 236
>pdb|1BIF| 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase Bifunctional
Enzyme Complexed With Atp-G-S And Phosphate
Length = 469
Score = 29.6 bits (65), Expect = 0.71
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 52 PKNILMIGSTGVGKTEIARRIAKIMELPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVL 111
P I+M+G GKT I++++ + L F+ V ++ VG+ MV+ +
Sbjct: 39 PTLIVMVGLPARGKTYISKKLTRY--LNFIGVPTREFN----VGQYRRDMVKTYKSFEFF 92
Query: 112 LVENEHKEKLKDKIEEAVIEKIAKKL 137
L +NE K++ + A + + K L
Sbjct: 93 LPDNEEGLKIRKQCALAALNDVRKFL 118
>pdb|2BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase H256a
Mutant With F6p In Phosphatase Active Site
pdb|2BIF|B Chain B, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase H256a
Mutant With F6p In Phosphatase Active Site
Length = 469
Score = 29.6 bits (65), Expect = 0.71
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 52 PKNILMIGSTGVGKTEIARRIAKIMELPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVL 111
P I+M+G GKT I++++ + L F+ V ++ VG+ MV+ +
Sbjct: 39 PTLIVMVGLPARGKTYISKKLTRY--LNFIGVPTREFN----VGQYRRDMVKTYKSFEFF 92
Query: 112 LVENEHKEKLKDKIEEAVIEKIAKKL 137
L +NE K++ + A + + K L
Sbjct: 93 LPDNEEGLKIRKQCALAALNDVRKFL 118
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
Length = 458
Score = 29.6 bits (65), Expect = 0.71
Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 18/103 (17%)
Query: 234 DSEAIKMEGLKRAESSG--VIFIDEIDKIAVSSKEGSRQDPSKEGVQRDLLPIVEGSVVN 291
+SE+ + + AE + +IFIDE+D IA P +E ++ + ++
Sbjct: 281 ESESNLRKAFEEAEKNAPAIIFIDELDAIA----------PKREKTHGEVERRIVSQLLT 330
Query: 292 TKYGSIKTEHILFIAAGAFHLSKPSDLIPELQ--GRFPLRVEL 332
G + H++ +AA ++P+ + P L+ GRF V++
Sbjct: 331 LMDGLKQRAHVIVMAA----TNRPNSIDPALRRFGRFDREVDI 369
Score = 27.7 bits (60), Expect = 2.7
Identities = 12/22 (54%), Positives = 15/22 (67%)
Query: 52 PKNILMIGSTGVGKTEIARRIA 73
P+ IL+ G G GKT IAR +A
Sbjct: 238 PRGILLYGPPGTGKTLIARAVA 259
>pdb|1JSQ|A Chain A, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|B Chain B, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|C Chain C, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|D Chain D, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|E Chain E, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|F Chain F, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|G Chain G, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|H Chain H, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
Length = 582
Score = 29.6 bits (65), Expect = 0.71
Identities = 24/104 (23%), Positives = 49/104 (47%), Gaps = 14/104 (13%)
Query: 53 KNILMIGSTGVGKTEIARRIAKIMELPFVKV-----EASKYT------EVGFVGRDVESM 101
K + ++G +G GK+ IA I + ++ ++ + +YT +V V ++V +
Sbjct: 370 KTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVH-L 428
Query: 102 VRDLVNNSVLLVENEHKEKLKDKIEEAVIEKIAKKLLPPLPNGV 145
D V N++ E + +++IEEA A + + NG+
Sbjct: 429 FNDTVANNIAYARTE--QYSREQIEEAARMAYAMDFINKMDNGL 470
>pdb|3BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase Empty
6-Pf-2k Active Site
Length = 468
Score = 29.6 bits (65), Expect = 0.71
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 52 PKNILMIGSTGVGKTEIARRIAKIMELPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVL 111
P I+M+G GKT I++++ + L F+ V ++ VG+ MV+ +
Sbjct: 38 PTLIVMVGLPARGKTYISKKLTRY--LNFIGVPTREFN----VGQYRRDMVKTYKSFEFF 91
Query: 112 LVENEHKEKLKDKIEEAVIEKIAKKL 137
L +NE K++ + A + + K L
Sbjct: 92 LPDNEEGLKIRKQCALAALNDVRKFL 117
>pdb|1SHK|A Chain A, The Three-Dimensional Structure Of Shikimate Kinase From
Erwinia Chrysanthemi
pdb|2SHK|A Chain A, The Three-Dimensional Structure Of Shikimate Kinase From
Erwinia Chrysanthemi Complexed With Adp
Length = 173
Score = 29.3 bits (64), Expect = 0.93
Identities = 14/44 (31%), Positives = 21/44 (46%)
Query: 55 ILMIGSTGVGKTEIARRIAKIMELPFVKVEASKYTEVGFVGRDV 98
I M+G+ G GKT + R +A+ + FV + G DV
Sbjct: 5 IFMVGARGCGKTTVGRELARALGYEFVDTDIFMQHTSGMTVADV 48
>pdb|1SHK|B Chain B, The Three-Dimensional Structure Of Shikimate Kinase From
Erwinia Chrysanthemi
Length = 173
Score = 29.3 bits (64), Expect = 0.93
Identities = 14/44 (31%), Positives = 21/44 (46%)
Query: 55 ILMIGSTGVGKTEIARRIAKIMELPFVKVEASKYTEVGFVGRDV 98
I M+G+ G GKT + R +A+ + FV + G DV
Sbjct: 5 IFMVGARGCGKTTVGRELARALGYEFVDTDIFMQHTSGMTVADV 48
>pdb|2SHK|B Chain B, The Three-Dimensional Structure Of Shikimate Kinase From
Erwinia Chrysanthemi Complexed With Adp
Length = 173
Score = 29.3 bits (64), Expect = 0.93
Identities = 14/44 (31%), Positives = 21/44 (46%)
Query: 55 ILMIGSTGVGKTEIARRIAKIMELPFVKVEASKYTEVGFVGRDV 98
I M+G+ G GKT + R +A+ + FV + G DV
Sbjct: 5 IFMVGARGCGKTTVGRELARALGYEFVDTDIFMQHTSGMTVADV 48
>pdb|1DKG|D Chain D, Crystal Structure Of The Nucleotide Exchange Factor Grpe
Bound To The Atpase Domain Of The Molecular Chaperone
Dnak
Length = 383
Score = 28.9 bits (63), Expect = 1.2
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 16/94 (17%)
Query: 23 KEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGVGKTEIARRIAKIMELPFVK 82
+E KK I RN +Q K E+ K E++ + LP++
Sbjct: 242 EEFKKDQGIDLRNDPLAMQRLKEAAEK--------------AKIELSSAQQTDVNLPYIT 287
Query: 83 VEAS--KYTEVGFVGRDVESMVRDLVNNSVLLVE 114
+A+ K+ + +ES+V DLVN S+ L++
Sbjct: 288 ADATGPKHMNIKVTRAKLESLVEDLVNRSIELLK 321
>pdb|1IK3|A Chain A, Lipoxygenase-3 (Soybean) Complex With
13(S)-Hydroperoxy-9(Z) ,11(E)-Octadecadienoic Acid
pdb|1BYT| Lipoxygenase-3 (Soybean) Complex With 4-Nitrocatechol
pdb|1LNH| Lipoxygenase-3(Soybean) Non-Heme Fe(Ii) Metalloprotein
Length = 857
Score = 28.5 bits (62), Expect = 1.6
Identities = 43/190 (22%), Positives = 84/190 (43%), Gaps = 26/190 (13%)
Query: 263 SSKEGSRQDPSKEGVQRDL-LPIVEGSVVNTKYGSIKTEHILFIAAGAFHLSKPSDLIPE 321
+ ++ +R+DP+ E D+ LP E +G +K+ F+ G +S+ +++P
Sbjct: 238 TGRKPTRKDPNSESRSNDVYLPRDEA------FGHLKSSD--FLTYGLKSVSQ--NVLPL 287
Query: 322 LQGRFPLRV---ELENLTE-EIMYMILTQTKTSIIKQYQALLKVEGVEIAFEDDAIK--- 374
LQ F L E ++ E +Y + T II + L ++ + + A+K
Sbjct: 288 LQSAFDLNFTPREFDSFDEVHGLYSGGIKLPTDIISKISPLPVLKEIFRTDGEQALKFPP 347
Query: 375 -ELAKLSYNANQKSEDIGARRL---HTTIEKVLEDI----SFEAEDYSGQNVTITKELVQ 426
++ ++S +A E+ L + + + L+D +++ Y ITKE ++
Sbjct: 348 PKVIQVSKSAWMTDEEFAREMLAGVNPNLIRCLKDFPPRSKLDSQVYGDHTSQITKEHLE 407
Query: 427 SKLEDLVADE 436
LE L DE
Sbjct: 408 PNLEGLTVDE 417
>pdb|1DN1|B Chain B, Crystal Structure Of The Neuronal-Sec1SYNTAXIN 1A COMPLEX
Length = 267
Score = 28.1 bits (61), Expect = 2.1
Identities = 39/178 (21%), Positives = 75/178 (41%), Gaps = 26/178 (14%)
Query: 92 GFVGRDVESMVRDLVNNSVLLVENEHKEKLKDKIEEAV--IEKIAKKLLPPLPNGVSEEK 149
GF+ + E++ +S +L EK K+++EE + I+K A K+
Sbjct: 42 GFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKV------------ 89
Query: 150 KQEYANSLLKMQQRIAQGE-LDSREIEIEVRKKSIEIDSNVPPEILRVQENLIKVFHKEQ 208
+ L ++Q I Q E L+ ++ +RK S E++ + N + ++E+
Sbjct: 90 ----RSKLKSIEQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMS-EYNATQSDYRER 144
Query: 209 DKVKKTLSVKEAKEALKAEISDTLLDSEAIKMEGLKRAESSGVIFIDEIDKIAVSSKE 266
K + ++ +E + +L+S G +SG+I I K A+S E
Sbjct: 145 CKGRIQRQLEITGRTTTSEELEDMLES------GNPAIFASGIIMDSSISKQALSEIE 196
>pdb|1E6J|P Chain P, Crystal Structure Of Hiv-1 Capsid Protein (P24) In Complex
With Fab13b5
Length = 210
Score = 28.1 bits (61), Expect = 2.1
Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 12/108 (11%)
Query: 139 PPLPNGVSEEKKQEYANSLLKMQQRIAQ---------GELDSREIEIEVRKKSIEIDSNV 189
P P + E + + A + +Q++I GE+ R I + + K +
Sbjct: 80 PIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKI---VRMYS 136
Query: 190 PPEILRVQENLIKVFHKEQDKVKKTLSVKEAKEALKAEISDTLLDSEA 237
P IL +++ + F D+ KTL ++A + +K +++TLL A
Sbjct: 137 PTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNA 184
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 27.7 bits (60), Expect = 2.7
Identities = 14/45 (31%), Positives = 27/45 (59%), Gaps = 1/45 (2%)
Query: 40 LQLEKSLQEEITPK-NILMIGSTGVGKTEIARRIAKIMELPFVKV 83
L ++++ + TP ++L+ G GKT +A +IA+ PF+K+
Sbjct: 51 LLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKI 95
>pdb|1CZ3|B Chain B, Dihydrofolate Reductase From Thermotoga Maritima
pdb|1D1G|A Chain A, Dihydrofolate Reductase From Thermotoga Maritima
pdb|1D1G|B Chain B, Dihydrofolate Reductase From Thermotoga Maritima
pdb|1CZ3|A Chain A, Dihydrofolate Reductase From Thermotoga Maritima
Length = 168
Score = 27.7 bits (60), Expect = 2.7
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 267 GSRQDPSK--EGVQRDLLPIVEGSVVNTKYGSIKTEHILFIAAGAFHLSKPSDLIPELQG 324
GS D K EG + + ++ G V T++ K LF+ + K E +G
Sbjct: 80 GSPADVVKFLEGKGYERVAVIGGKTVFTEFLREKLVDELFVTVEPYVFGKGIPFFDEFEG 139
Query: 325 RFPLR-VELENLTE 337
FPL+ +E+ L E
Sbjct: 140 YFPLKLLEMRRLNE 153
>pdb|1NSF| D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive Factor
(Nsf)
Length = 273
Score = 27.7 bits (60), Expect = 2.7
Identities = 14/45 (31%), Positives = 27/45 (59%), Gaps = 1/45 (2%)
Query: 40 LQLEKSLQEEITPK-NILMIGSTGVGKTEIARRIAKIMELPFVKV 83
L ++++ + TP ++L+ G GKT +A +IA+ PF+K+
Sbjct: 50 LLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKI 94
>pdb|1FBN|A Chain A, Crystal Structure Of A Fibrillarin Homologue From
Methanococcus Jannaschii, A Hyperthermophile, At 1.6 A
Length = 230
Score = 27.7 bits (60), Expect = 2.7
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 10/83 (12%)
Query: 186 DSNVPPEILRVQENLIKVFHKEQDKVKKTLSVKEAKE----------ALKAEISDTLLDS 235
D+N P E + E + ++ + + +K AK A+KA D D
Sbjct: 130 DANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGXIAIKARSIDVTKDP 189
Query: 236 EAIKMEGLKRAESSGVIFIDEID 258
+ I E + E+ G +DE+D
Sbjct: 190 KEIFKEQKEILEAGGFKIVDEVD 212
>pdb|1FUG|A Chain A, S-Adenosylmethionine Synthetase
pdb|1FUG|B Chain B, S-Adenosylmethionine Synthetase
pdb|1MXA| S-Adenosylmethionine Synthetase With Ppi
pdb|1MXB| S-Adenosylmethionine Synthetase With Adp
pdb|1MXC| S-Adenosylmethionine Synthetase With 8-Br-Adp
pdb|1XRA| Mol_id: 1; Molecule: S-Adenosylmethionine Synthetase; Chain: Null;
Synonym: Mat, Atp:l-Methionine S-Adenosyltransferase;
Ec: 2.5.1.6; Biological_unit: Homotetramer
pdb|1XRC| Mol_id: 1; Molecule: S-Adenosylmethionine Synthetase; Chain: Null;
Synonym: Mat, Atp:l-Methionine S-Adenosyltransferase;
Ec: 2.5.1.6; Other_details: Crystallized With Two Co
Ions Instead Of Mg Ions; Biological_unit: Homotetramer
Length = 383
Score = 27.7 bits (60), Expect = 2.7
Identities = 12/36 (33%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 105 LVNNSVLLVENEHKEKLKDK-IEEAVIEKIAKKLLP 139
+V +++ +H E++ K ++EAV+E+I K +LP
Sbjct: 177 IVGIDAVVLSTQHSEEIDQKSLQEAVMEEIIKPILP 212
>pdb|1GGQ|A Chain A, Outer Surface Protein C (Ospc) Of Borrelia Burgdorferi
Strain B31
pdb|1GGQ|B Chain B, Outer Surface Protein C (Ospc) Of Borrelia Burgdorferi
Strain B31
pdb|1GGQ|C Chain C, Outer Surface Protein C (Ospc) Of Borrelia Burgdorferi
Strain B31
pdb|1GGQ|D Chain D, Outer Surface Protein C (Ospc) Of Borrelia Burgdorferi
Strain B31
Length = 174
Score = 27.3 bits (59), Expect = 3.5
Identities = 39/179 (21%), Positives = 80/179 (43%), Gaps = 35/179 (19%)
Query: 95 GRDVESMVRDLVNNSVLLVENEHKEKLKDKIEEAVIEKIAKKLLPPLPNGVSEEKKQE-- 152
G ++ + + + +++ +L+ + E L I+E + I KK+ NG+ E
Sbjct: 3 GPNLTEISKKITDSNAVLLAVKEVEALLSSIDEIAAKAIGKKI--HQNNGLDTENNHNGS 60
Query: 153 -----YANSLLKMQQRIAQGELDSREIEIEVRKKSIEIDSNVPPEILRVQENLIKVFHKE 207
YA S L ++Q++ + + + +I+ KK E +N K+ K
Sbjct: 61 LLAGAYAISTL-IKQKLDGLKNEGLKEKIDAAKKCSETFTN-------------KLKEKH 106
Query: 208 QDKVKKTLSVKEAKEALKAEISDTLLDSEAIKMEGLKRAESSGVIFIDEIDKIAVSSKE 266
D K+ ++ +AKEA +L + K +G AE G +F + ++ ++ ++KE
Sbjct: 107 TDLGKEGVTDADAKEA--------ILKTNGTKTKG---AEELGKLF-ESVEVLSKAAKE 153
>pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor
pdb|1J7N|A Chain A, Anthrax Toxin Lethal Factor
pdb|1JKY|A Chain A, Crystal Structure Of The Anthrax Lethal Factor (Lf): Wild-
Type Lf Complexed With The N-Terminal Sequence Of Mapkk2
Length = 776
Score = 26.9 bits (58), Expect = 4.6
Identities = 15/35 (42%), Positives = 23/35 (64%)
Query: 116 EHKEKLKDKIEEAVIEKIAKKLLPPLPNGVSEEKK 150
+H K++ K EEAV ++ A+KLL +P+ V E K
Sbjct: 41 KHIVKIEVKGEEAVKKEAAEKLLEKVPSDVLEMYK 75
>pdb|1E6C|A Chain A, K15m Mutant Of Shikimate Kinase From Erwinia
Chrysanthemi
pdb|1E6C|B Chain B, K15m Mutant Of Shikimate Kinase From Erwinia
Chrysanthemi
Length = 173
Score = 26.9 bits (58), Expect = 4.6
Identities = 13/44 (29%), Positives = 20/44 (44%)
Query: 55 ILMIGSTGVGKTEIARRIAKIMELPFVKVEASKYTEVGFVGRDV 98
I M+G+ G G T + R +A+ + FV + G DV
Sbjct: 5 IFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTSGMTVADV 48
>pdb|1XRB| S-Adenosylmethionine Synthetase (Mat, Atp: L-Methionine
S-Adenosyltransferase, E.C.2.5.1.6) In Which Met
Residues Are Replaced With Selenomethionine Residues
(Mse)
Length = 383
Score = 26.9 bits (58), Expect = 4.6
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 105 LVNNSVLLVENEHKEKLKDK-IEEAVIEKIAKKLLP 139
+V +++ +H E++ K ++EAV E+I K +LP
Sbjct: 177 IVGIDAVVLSTQHSEEIDQKSLQEAVXEEIIKPILP 212
>pdb|1B3U|A Chain A, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
pdb|1B3U|B Chain B, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
Length = 588
Score = 26.6 bits (57), Expect = 6.0
Identities = 32/167 (19%), Positives = 68/167 (40%), Gaps = 23/167 (13%)
Query: 94 VGRDVESMVRDLVNNSVLLVENEHKEKLKDKIEEAVIEKIAKKLLPPLPNGVSEEK---K 150
V ++ R+L ++ +V KL + + ++ + +++P N S+E+ +
Sbjct: 161 VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVR 220
Query: 151 QEYANSLLKMQQRIAQGELD--------------SREIEIEVRKKSIEIDSNVPPEILRV 196
+ + + Q + Q +L+ S + V K E+ V PEI +
Sbjct: 221 LLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKT 280
Query: 197 Q-----ENLIKVFHKEQDKVKKTLSVKEAKEALKAEISDTLLDSEAI 238
+NL+K E + + VKE E L A+ + ++ S+ +
Sbjct: 281 DLVPAFQNLMKDCEAEV-RAAASHKVKEFCENLSADCRENVIMSQIL 326
>pdb|1BAJ| Hiv-1 Capsid Protein C-Terminal Fragment Plus Gag P2 Domain
Length = 101
Score = 26.6 bits (57), Expect = 6.0
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 190 PPEILRVQENLIKVFHKEQDKVKKTLSVKEAKEALKAEISDTLLDSEA 237
P IL +++ + F D+ KTL ++A + +K +++TLL A
Sbjct: 3 PTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNA 50
>pdb|1A43| Structure Of The Hiv-1 Capsid Protein Dimerization Domain At 2.6a
Resolution
Length = 87
Score = 26.6 bits (57), Expect = 6.0
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 190 PPEILRVQENLIKVFHKEQDKVKKTLSVKEAKEALKAEISDTLLDSEA 237
P IL +++ + F D+ KTL ++A + +K +++TLL A
Sbjct: 3 PTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNA 50
>pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp.
pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
Length = 592
Score = 26.2 bits (56), Expect = 7.9
Identities = 24/86 (27%), Positives = 40/86 (45%), Gaps = 1/86 (1%)
Query: 145 VSEEKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKSIEIDSNVPPEILRVQENLIKVF 204
V E Q A L +MQ++ Q E K+ E N ++L+ QE + +
Sbjct: 494 VKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALK 553
Query: 205 HKEQDKVKKTLSVKEAKEALKAEISD 230
+EQ+++ K KE++ +K EI D
Sbjct: 554 LQEQEQLLKEGFQKESR-IMKNEIQD 578
>pdb|1JR3|A Chain A, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1JR3|C Chain C, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1JR3|B Chain B, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
Length = 373
Score = 26.2 bits (56), Expect = 7.9
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 56 LMIGSTGVGKTEIARRIAK 74
L G+ GVGKT IAR +AK
Sbjct: 42 LFSGTRGVGKTSIARLLAK 60
>pdb|1KHO|A Chain A, Crystal Structure Analysis Of Clostridium Perfringens
Alpha- Toxin Isolated From Avian Strain Swcp
pdb|1KHO|B Chain B, Crystal Structure Analysis Of Clostridium Perfringens
Alpha- Toxin Isolated From Avian Strain Swcp
Length = 370
Score = 26.2 bits (56), Expect = 7.9
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Query: 2 SKLNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGST 61
S N E+VAY+ G+K A + F + + Q ++ + P N M GS
Sbjct: 249 SSANKNVNELVAYITTG--GEKYAGTDDYMYFGIKTKDGQTQEWTMDN--PGNDFMTGSQ 304
Query: 62 GVGKTEIARRIAKIMELPFVKVEASKYTEVG 92
++ + KI ++ + + SKYTE G
Sbjct: 305 DTYTFKLKDKNLKIDDIQNMWIRKSKYTEFG 335
>pdb|1GKI|A Chain A, Plasmid Coupling Protein Trwb In Complex With Adp And
Mg2+.
pdb|1GKI|B Chain B, Plasmid Coupling Protein Trwb In Complex With Adp And
Mg2+.
pdb|1GKI|D Chain D, Plasmid Coupling Protein Trwb In Complex With Adp And
Mg2+.
pdb|1GKI|E Chain E, Plasmid Coupling Protein Trwb In Complex With Adp And
Mg2+.
pdb|1GKI|F Chain F, Plasmid Coupling Protein Trwb In Complex With Adp And
Mg2+.
pdb|1GKI|G Chain G, Plasmid Coupling Protein Trwb In Complex With Adp And
Mg2+.
pdb|1GL7|A Chain A, Plasmid Coupling Protein Trwb In Complex With The
Non-Hydrolisable Atp-Analogue Adpnp.
pdb|1GL7|B Chain B, Plasmid Coupling Protein Trwb In Complex With The
Non-Hydrolisable Atp-Analogue Adpnp.
pdb|1GL7|D Chain D, Plasmid Coupling Protein Trwb In Complex With The
Non-Hydrolisable Atp-Analogue Adpnp.
pdb|1GL7|E Chain E, Plasmid Coupling Protein Trwb In Complex With The
Non-Hydrolisable Atp-Analogue Adpnp.
pdb|1GL7|F Chain F, Plasmid Coupling Protein Trwb In Complex With The
Non-Hydrolisable Atp-Analogue Adpnp.
pdb|1GL7|G Chain G, Plasmid Coupling Protein Trwb In Complex With The
Non-Hydrolisable Atp-Analogue Adpnp.
pdb|1E9S|A Chain A, Bacterial Conjugative Coupling Protein Trwbdeltan70.
Unbound Monoclinic Form.
pdb|1E9S|F Chain F, Bacterial Conjugative Coupling Protein Trwbdeltan70.
Unbound Monoclinic Form.
pdb|1E9S|G Chain G, Bacterial Conjugative Coupling Protein Trwbdeltan70.
Unbound Monoclinic Form.
pdb|1E9S|L Chain L, Bacterial Conjugative Coupling Protein Trwbdeltan70.
Unbound Monoclinic Form.
pdb|1E9S|E Chain E, Bacterial Conjugative Coupling Protein Trwbdeltan70.
Unbound Monoclinic Form.
pdb|1E9S|M Chain M, Bacterial Conjugative Coupling Protein Trwbdeltan70.
Unbound Monoclinic Form.
pdb|1E9S|H Chain H, Bacterial Conjugative Coupling Protein Trwbdeltan70.
Unbound Monoclinic Form.
pdb|1E9S|I Chain I, Bacterial Conjugative Coupling Protein Trwbdeltan70.
Unbound Monoclinic Form.
pdb|1E9S|J Chain J, Bacterial Conjugative Coupling Protein Trwbdeltan70.
Unbound Monoclinic Form.
pdb|1E9R|B Chain B, Bacterial Conjugative Coupling Protein Trwbdeltan70.
Trigonal Form In Complex With Sulphate.
pdb|1E9S|B Chain B, Bacterial Conjugative Coupling Protein Trwbdeltan70.
Unbound Monoclinic Form.
pdb|1E9S|K Chain K, Bacterial Conjugative Coupling Protein Trwbdeltan70.
Unbound Monoclinic Form.
pdb|1E9R|A Chain A, Bacterial Conjugative Coupling Protein Trwbdeltan70.
Trigonal Form In Complex With Sulphate.
pdb|1E9R|E Chain E, Bacterial Conjugative Coupling Protein Trwbdeltan70.
Trigonal Form In Complex With Sulphate.
pdb|1E9R|G Chain G, Bacterial Conjugative Coupling Protein Trwbdeltan70.
Trigonal Form In Complex With Sulphate.
pdb|1E9S|D Chain D, Bacterial Conjugative Coupling Protein Trwbdeltan70.
Unbound Monoclinic Form.
pdb|1E9R|F Chain F, Bacterial Conjugative Coupling Protein Trwbdeltan70.
Trigonal Form In Complex With Sulphate.
pdb|1E9R|D Chain D, Bacterial Conjugative Coupling Protein Trwbdeltan70.
Trigonal Form In Complex With Sulphate
Length = 437
Score = 26.2 bits (56), Expect = 7.9
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 9/60 (15%)
Query: 23 KEAKKSIAIAFRNRYRRLQLEKSLQEEIT---------PKNILMIGSTGVGKTEIARRIA 73
K + I + +R+ EK+ Q + P+++L+ G+TG GK+ + R +A
Sbjct: 15 KRFLRGTRIVSGGKLKRMTREKAKQVTVAGVPMPRDAEPRHLLVNGATGTGKSVLLRELA 74
>pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain
Of Clpb
Length = 195
Score = 26.2 bits (56), Expect = 7.9
Identities = 19/71 (26%), Positives = 31/71 (42%), Gaps = 15/71 (21%)
Query: 4 LNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63
+++T R LD I +E +++I + R T N ++IG GV
Sbjct: 10 IDLTERAEQGKLDPVIGRDEEIRRTIQVLQRR---------------TKNNPVLIGEPGV 54
Query: 64 GKTEIARRIAK 74
GKT I +A+
Sbjct: 55 GKTAIVEGLAQ 65
>pdb|1GL6|A Chain A, Plasmid Coupling Protein Trwb In Complex With The
Non-Hydrolysable Gtp Analogue Gdpnp
pdb|1GL6|B Chain B, Plasmid Coupling Protein Trwb In Complex With The
Non-Hydrolysable Gtp Analogue Gdpnp
pdb|1GL6|D Chain D, Plasmid Coupling Protein Trwb In Complex With The
Non-Hydrolysable Gtp Analogue Gdpnp
pdb|1GL6|E Chain E, Plasmid Coupling Protein Trwb In Complex With The
Non-Hydrolysable Gtp Analogue Gdpnp
pdb|1GL6|F Chain F, Plasmid Coupling Protein Trwb In Complex With The
Non-Hydrolysable Gtp Analogue Gdpnp
pdb|1GL6|G Chain G, Plasmid Coupling Protein Trwb In Complex With The
Non-Hydrolysable Gtp Analogue Gdpnp
Length = 436
Score = 26.2 bits (56), Expect = 7.9
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 9/60 (15%)
Query: 23 KEAKKSIAIAFRNRYRRLQLEKSLQEEIT---------PKNILMIGSTGVGKTEIARRIA 73
K + I + +R+ EK+ Q + P+++L+ G+TG GK+ + R +A
Sbjct: 14 KRFLRGTRIVSGGKLKRMTREKAKQVTVAGVPMPRDAEPRHLLVNGATGTGKSVLLRELA 73
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.312 0.132 0.340
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,181,075
Number of Sequences: 13198
Number of extensions: 85267
Number of successful extensions: 324
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 284
Number of HSP's gapped (non-prelim): 47
length of query: 443
length of database: 2,899,336
effective HSP length: 91
effective length of query: 352
effective length of database: 1,698,318
effective search space: 597807936
effective search space used: 597807936
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (26.2 bits)