BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645144|ref|NP_207314.1| GTP-binding protein (era)
[Helicobacter pylori 26695]
(302 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved... 182 3e-47
pdb|1II0|B Chain B, Crystal Structure Of The Escherichia Co... 31 0.20
pdb|1BKH|C Chain C, Muconate Lactonizing Enzyme From Pseudo... 30 0.34
pdb|1I5P|A Chain A, Insecticidal Crystal Protein Cry2aa 30 0.34
pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiati... 28 0.99
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Co... 28 1.3
pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Com... 28 1.7
pdb|1QTQ|A Chain A, Glutaminyl-Trna Synthetase Complexed Wi... 27 2.9
pdb|1QRT|A Chain A, Glutaminyl-Trna Synthetase Mutant D235g... 27 2.9
pdb|1QRS|A Chain A, Glutaminyl-Trna Synthetase Mutant D235n... 27 2.9
pdb|1EXD|A Chain A, Crystal Structure Of A Tight-Binding Gl... 27 2.9
pdb|1QRU|A Chain A, Glutaminyl-Trna Synthetase Mutant I129t... 27 2.9
pdb|1LNZ|A Chain A, Structure Of The Obg Gtp-Binding Protei... 27 2.9
pdb|1XAC| Chimera Isopropylmalate Dehydrogenase Between B... 27 3.7
pdb|1ULB| Purine Nucleoside Phosphorylase (E.C.2.4.2.1) C... 26 4.9
pdb|1BOO|A Chain A, Pvuii Dna Methyltransferase (Cytosine-N... 26 6.4
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex >... 25 8.3
pdb|1HYH|C Chain C, L-2-Hydroxycarboxylate Dehydrogenase, L... 25 8.3
pdb|1KGN|A Chain A, R2f From Corynebacterium Ammoniagenes I... 25 8.3
>pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
Length = 301
Score = 182 bits (463), Expect = 3e-47
Identities = 112/299 (37%), Positives = 167/299 (55%), Gaps = 10/299 (3%)
Query: 3 KTKAGFVALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEWYESQII 62
K+ GF+A++G+PN GKSTLLN LL +++ S KA TR IV + Y Q I
Sbjct: 5 KSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHR---IVGIHTEGAY--QAI 59
Query: 63 FLDTPGLHHQEK-LLNQCMLSQALKAMGDAELCVFLASVHDDLKGYEEFLSLCQK---PH 118
++DTPGLH +EK +N+ M A ++GD EL +F+ E L+ ++ P
Sbjct: 60 YVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPV 119
Query: 119 ILALSKIDTATHKQVLQKLQEYQQYDSQFLALVPLSAKKSQNLNALLECISQHLSPSAWL 178
ILA++K+D K L ++ FL +VP+SA+ N++ + + +HL +
Sbjct: 120 ILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHH 179
Query: 179 FEKDLMSDEKMRDIYKEIIRESLFDFLSDEIPYESDVMIDKFIEEERID-KVYARIIVEK 237
F +D ++D R + EIIRE L FL E+PY V I++F+ ER + I+VE+
Sbjct: 180 FPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVSNERGGYDINGLILVER 239
Query: 238 ESQKKIVIGKNGVNIKRIGTNARLKMQEVGEKKVFLNLQVIAQKSWSKEEKSLQKLGYI 296
E QKK+VIG G IK IG AR MQE+ E V L L V + W+ +E++L+ LGY+
Sbjct: 240 EGQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVKSGWADDERALRSLGYV 298
>pdb|1II0|B Chain B, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase
pdb|1II0|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase
pdb|1II9|B Chain B, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
pdb|1F48|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase
pdb|1II9|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
pdb|1IHU|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Mg-Adp-Alf3
Length = 589
Score = 30.8 bits (68), Expect = 0.20
Identities = 35/166 (21%), Positives = 68/166 (40%), Gaps = 22/166 (13%)
Query: 3 KTKAGFVALIGKPNAGKSTLLNTL--------LNAHLALVSHKANATRKL--------MK 46
+ + G + L+GK GK+T+ + + HL A+ + L +
Sbjct: 324 RNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAAHLSMTLNGSLNNLQVS 383
Query: 47 CIVPFKDKEWYESQIIFLDTPGLHHQEKLLNQCMLSQALKAMGDAELCVFLASVHDDLKG 106
I P ++ E Y + L+T G E + +L + L++ E+ VF A +
Sbjct: 384 RIDPHEETERYRQHV--LETKGKELDE--AGKRLLEEDLRSPCTEEIAVFQAFSRVIREA 439
Query: 107 YEEFLSLCQKP--HILALSKIDTATHKQVLQKLQEYQQYDSQFLAL 150
+ F+ + P H L L A H+++ +K+ E + + + L
Sbjct: 440 GKRFVVMDTAPTGHTLLLLDATGAYHREIAKKMGEKGHFTTPMMLL 485
>pdb|1BKH|C Chain C, Muconate Lactonizing Enzyme From Pseudomonas Putida
Length = 359
Score = 30.0 bits (66), Expect = 0.34
Identities = 48/223 (21%), Positives = 89/223 (39%), Gaps = 23/223 (10%)
Query: 62 IFLDTPGLHHQEKLLNQCMLSQALKAMGDAELCVFLASVHDDLKGYEEFLSLCQKPHILA 121
I +D P + Q ++ + S ++ +G+A LA ++ +G + + P ++
Sbjct: 9 IIVDLPTIQQQTLVVLRVRCSDGVEGIGEATTIGGLAYGYESPEGIKANIDAHLAPALIG 68
Query: 122 LSKIDTATHKQVLQKLQEYQQYDSQFLALVPLSAKKSQNLNALLECISQHLSPS---AWL 178
L+ + L KL + + + L A+ + + E + + S AW
Sbjct: 69 LAADNINAAMLKLDKLAKGNTFAKSGIESALLDAQGKRLGLPVSELLGGRVRDSLEVAW- 127
Query: 179 FEKDLMSDEKMRDIYK-----EIIRESLFDFLSDEIPYESDVMIDKFIEEERIDKVYARI 233
L S + RDI + EI R +F P E D+ I+ E D R+
Sbjct: 128 ---TLASGDTARDIAEARHMLEIRRHRVFKLKIGANPVEQDLKHVVTIKRELGDSASVRV 184
Query: 234 IVEK---ESQ---KKIVIGKNGVN-----IKRIGTNARLKMQE 265
V + ESQ V+G NG++ I RI ++++ +
Sbjct: 185 DVNQYWDESQAIRACQVLGDNGIDLIEQPISRINRGGQVRLNQ 227
>pdb|1I5P|A Chain A, Insecticidal Crystal Protein Cry2aa
Length = 633
Score = 30.0 bits (66), Expect = 0.34
Identities = 25/88 (28%), Positives = 44/88 (49%), Gaps = 2/88 (2%)
Query: 69 LHHQEKLLNQCMLSQALKAMGDAELCVFLASVHDDLKGYEEFLSLCQKPHILALSKIDTA 128
L E+ LNQ + + L A +AEL A++ + + + FL+ Q P L+++
Sbjct: 94 LRETEQFLNQRLNTDTL-ARVNAELIGLQANIREFNQQVDNFLNPTQNPVPLSITSSVNT 152
Query: 129 THKQVLQKLQEYQQYDSQFLALVPLSAK 156
+ L +L ++Q Q L L+PL A+
Sbjct: 153 MQQLFLNRLPQFQIQGYQLL-LLPLFAQ 179
>pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdpnp
pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdp
Length = 594
Score = 28.5 bits (62), Expect = 0.99
Identities = 30/142 (21%), Positives = 62/142 (43%), Gaps = 26/142 (18%)
Query: 2 MKTKAGFVALIGKPNAGKSTLLNTLLNAHLAL-----VSHKANATRKLMKCI-------- 48
MK ++ V+++G + GK+TLL+ + + +A ++ AT M I
Sbjct: 1 MKIRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFL 60
Query: 49 VPFKDKEWYESQIIFLDTPGLHHQEKLLNQCMLSQALKAMGDAELCVFLASVHDDLKGYE 108
F +E + F+DTPG ++ + + A+L + + +++ K
Sbjct: 61 KKFSIRETLPG-LFFIDTPG--------HEAFTTLRKRGGALADLAILIVDINEGFKPQT 111
Query: 109 E----FLSLCQKPHILALSKID 126
+ L + + P ++A +KID
Sbjct: 112 QEALNILRMYRTPFVVAANKID 133
>pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp.
pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
Length = 592
Score = 28.1 bits (61), Expect = 1.3
Identities = 24/72 (33%), Positives = 34/72 (46%), Gaps = 4/72 (5%)
Query: 9 VALIGKPNAGKSTLLNTLLNAH--LALVSHKANATRKLMKCIVPFKDKEWYESQIIFLDT 66
VA++G GKS L+N L +L S + T+ + VP K + ++ LDT
Sbjct: 41 VAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGH--ILVLLDT 98
Query: 67 PGLHHQEKLLNQ 78
GL EK NQ
Sbjct: 99 EGLGDVEKGDNQ 110
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 27.7 bits (60), Expect = 1.7
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 5 KAGFVALIGKPNAGKSTLLNTLLNAHLA 32
K G + +G NAGK+TLL+ L N LA
Sbjct: 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLA 49
>pdb|1QTQ|A Chain A, Glutaminyl-Trna Synthetase Complexed With Trna And An
Amino Acid Analog
pdb|1GTR|A Chain A, Glutaminyl-Trna Synthetase (E.C.6.1.1.18) Complexed With
Trna And Atp (-8 Degrees C)
pdb|1GTS|A Chain A, Glutaminyl-Trna Synthetase (E.C.6.1.1.18) Complexed With
Trna And Amp (8 Degrees C)
pdb|1GSG|P Chain P, Glutaminyl-TRNA Synthetase (GlnRS) Complex With tRNAGln
And ATP
Length = 553
Score = 26.9 bits (58), Expect = 2.9
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 206 SDEIPYESDVMIDKFIEEERIDKVYARIIVEKE 238
S ++P+ ++ ID+ E +K Y R+++ KE
Sbjct: 376 SRQVPFSGEIWIDRADFREEANKQYKRLVLGKE 408
>pdb|1QRT|A Chain A, Glutaminyl-Trna Synthetase Mutant D235g Complexed With
Glutamine Transfer Rna
Length = 553
Score = 26.9 bits (58), Expect = 2.9
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 206 SDEIPYESDVMIDKFIEEERIDKVYARIIVEKE 238
S ++P+ ++ ID+ E +K Y R+++ KE
Sbjct: 376 SRQVPFSGEIWIDRADFREEANKQYKRLVLGKE 408
>pdb|1QRS|A Chain A, Glutaminyl-Trna Synthetase Mutant D235n Complexed With
Glutamine Transfer Rna
Length = 553
Score = 26.9 bits (58), Expect = 2.9
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 206 SDEIPYESDVMIDKFIEEERIDKVYARIIVEKE 238
S ++P+ ++ ID+ E +K Y R+++ KE
Sbjct: 376 SRQVPFSGEIWIDRADFREEANKQYKRLVLGKE 408
>pdb|1EXD|A Chain A, Crystal Structure Of A Tight-Binding Glutamine Trna Bound
To Glutamine Aminoacyl Trna Synthetase
pdb|1EUQ|A Chain A, Crystal Structure Of Glutaminyl-Trna Synthetase Complexed
With A Trna-Gln Mutant And An Active-Site Inhibitor
pdb|1EUY|A Chain A, Glutaminyl-Trna Synthetase Complexed With A Trna Mutant
And An Active Site Inhibitor
Length = 548
Score = 26.9 bits (58), Expect = 2.9
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 206 SDEIPYESDVMIDKFIEEERIDKVYARIIVEKE 238
S ++P+ ++ ID+ E +K Y R+++ KE
Sbjct: 377 SRQVPFSGEIWIDRADFREEANKQYKRLVLGKE 409
>pdb|1QRU|A Chain A, Glutaminyl-Trna Synthetase Mutant I129t Complexed With
Glutamine Transfer Rna
Length = 553
Score = 26.9 bits (58), Expect = 2.9
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 206 SDEIPYESDVMIDKFIEEERIDKVYARIIVEKE 238
S ++P+ ++ ID+ E +K Y R+++ KE
Sbjct: 376 SRQVPFSGEIWIDRADFREEANKQYKRLVLGKE 408
>pdb|1LNZ|A Chain A, Structure Of The Obg Gtp-Binding Protein
pdb|1LNZ|B Chain B, Structure Of The Obg Gtp-Binding Protein
Length = 342
Score = 26.9 bits (58), Expect = 2.9
Identities = 39/194 (20%), Positives = 80/194 (41%), Gaps = 34/194 (17%)
Query: 9 VALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEWYESQIIFLDTPG 68
V L+G P+ GKSTLL+ + +A + + + + + + + D PG
Sbjct: 161 VGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGXVETDDGRSF-----VXADLPG 215
Query: 69 L---HHQEKLLNQCMLSQALKAMGDAELCVFL---------------ASVHDDLKGYEEF 110
L HQ L Q L+ + + V + +++ +L Y
Sbjct: 216 LIEGAHQGVGLGH----QFLRHIERTRVIVHVIDXSGLEGRDPYDDYLTINQELSEYN-- 269
Query: 111 LSLCQKPHILALSKIDTATHKQVLQKLQEYQQYDSQFLALVPLSAKKSQNLNALLECISQ 170
L L ++P I+ +K D + + L+ +++ + + P+SA + L LL ++
Sbjct: 270 LRLTERPQIIVANKXDX---PEAAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVAN 326
Query: 171 HL--SPSAWLFEKD 182
L +P L++++
Sbjct: 327 QLENTPEFPLYDEE 340
>pdb|1XAC| Chimera Isopropylmalate Dehydrogenase Between Bacillus Subtilis
(M) And Thermus Thermophilus (T) From N-Terminal: 20% T
Middle 20% M Residual 60% T, Mutated At S82r. Low
Temperature (100k) Structure.
pdb|1XAD| Chimera Isopropylmalate Dehydrogenase Between Bacillus Subtilis
(M) And Thermus Thermophilus (T) From N-Terminal: 20% T
Middle 20% M Residual 60% T, Mutated At S82r. Low
Temperature (150k) Structure
Length = 345
Score = 26.6 bits (57), Expect = 3.7
Identities = 26/117 (22%), Positives = 46/117 (39%), Gaps = 29/117 (24%)
Query: 180 EKDLMSDEKMRDIYKEIIRESLFDFLSDEIPYESDVM--IDKFIEEERIDKVY------- 230
EK L+S K D++ + +F+ LSD P + + + +D I E +Y
Sbjct: 87 EKGLLSIRKQLDLFANLRPVKVFESLSDASPLKKEYIDNVDFVIVRELTGGIYFGEPRGM 146
Query: 231 -------------------ARIIVE-KESQKKIVIGKNGVNIKRIGTNARLKMQEVG 267
AR+ E ++K V+ + N+ +G R ++EVG
Sbjct: 147 SEAEAWNTERYSKPEVERVARVAFEAARKRRKHVVSVDKANVLEVGEFWRKTVEEVG 203
>pdb|1ULB| Purine Nucleoside Phosphorylase (E.C.2.4.2.1) Complex With Guanine
pdb|1ULA| Purine Nucleoside Phosphorylase (E.C.2.4.2.1)
Length = 289
Score = 26.2 bits (56), Expect = 4.9
Identities = 23/87 (26%), Positives = 42/87 (47%), Gaps = 8/87 (9%)
Query: 78 QCMLSQAL--KAMGDAELCVFLASVHDDLKGYEEFLSLCQKPHILALSKIDTATHKQVL- 134
+C + Q L A+G + + + + H L+ + SL I+ ++ A H++VL
Sbjct: 205 ECRVLQKLGADAVGMSTVPEVIVARHCGLRVFG--FSLITNKVIMDYESLEKANHEEVLA 262
Query: 135 ---QKLQEYQQYDSQFLALVPLSAKKS 158
Q Q+ +Q+ S +A +PL K S
Sbjct: 263 AGKQAAQKLEQFVSILMASIPLPDKAS 289
>pdb|1BOO|A Chain A, Pvuii Dna Methyltransferase (Cytosine-N4-Specific)
Length = 323
Score = 25.8 bits (55), Expect = 6.4
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 170 QHLSPSAWLFEKDLMSDEKMRDIYKEIIRESLFDFLS 206
++++ SA+ F + +S+EK+ DIY I+ D S
Sbjct: 285 EYVAASAFRFLDNNISEEKITDIYNRILNGESLDLNS 321
>pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 25.4 bits (54), Expect = 8.3
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 5 KAGFVALIGKPNAGKSTLLNTLLNAHL 31
K G + +G NAGK+TLL+ L + L
Sbjct: 24 KTGKLVFLGLDNAGKTTLLHMLKDDRL 50
>pdb|1HYH|C Chain C, L-2-Hydroxycarboxylate Dehydrogenase, L-Lactate
Dehydrogenase Mol_id: 1; Molecule:
L-2-Hydroxyisocaproate Dehydrogenase; Chain: A, B, C, D;
Synonym: L-Hicdh; Ec: 1.1.1.27; Engineered: Yes;
Heterogen: Nad+; Heterogen: Sulfate
pdb|1HYH|A Chain A, L-2-Hydroxycarboxylate Dehydrogenase, L-Lactate
Dehydrogenase Mol_id: 1; Molecule:
L-2-Hydroxyisocaproate Dehydrogenase; Chain: A, B, C, D;
Synonym: L-Hicdh; Ec: 1.1.1.27; Engineered: Yes;
Heterogen: Nad+; Heterogen: Sulfate
pdb|1HYH|D Chain D, L-2-Hydroxycarboxylate Dehydrogenase, L-Lactate
Dehydrogenase Mol_id: 1; Molecule:
L-2-Hydroxyisocaproate Dehydrogenase; Chain: A, B, C, D;
Synonym: L-Hicdh; Ec: 1.1.1.27; Engineered: Yes;
Heterogen: Nad+; Heterogen: Sulfate
pdb|1HYH|B Chain B, L-2-Hydroxycarboxylate Dehydrogenase, L-Lactate
Dehydrogenase Mol_id: 1; Molecule:
L-2-Hydroxyisocaproate Dehydrogenase; Chain: A, B, C, D;
Synonym: L-Hicdh; Ec: 1.1.1.27; Engineered: Yes;
Heterogen: Nad+; Heterogen: Sulfate
Length = 309
Score = 25.4 bits (54), Expect = 8.3
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 84 ALKAMGDAELCVFLASVHDDLKGYEEFLSLCQKPHILALSKIDTATHKQVLQKLQEYQQY 143
A M DA + +++ DD+ Y + ++ + +LA + +D T +Q +KL + + Y
Sbjct: 240 AKAVMADAHAELVVSNRRDDMGMYLSYPAIIGRDGVLAETTLDLTTDEQ--EKLLQSRDY 297
Query: 144 DSQ 146
Q
Sbjct: 298 IQQ 300
>pdb|1KGN|A Chain A, R2f From Corynebacterium Ammoniagenes In Its Oxidised, Fe
Containing, Form
pdb|1KGN|B Chain B, R2f From Corynebacterium Ammoniagenes In Its Oxidised, Fe
Containing, Form
pdb|1KGN|C Chain C, R2f From Corynebacterium Ammoniagenes In Its Oxidised, Fe
Containing, Form
pdb|1KGN|D Chain D, R2f From Corynebacterium Ammoniagenes In Its Oxidised, Fe
Containing, Form
pdb|1KGP|A Chain A, R2f From Corynebacterium Ammoniagenes In Its Mn
Substituted Form
pdb|1KGP|B Chain B, R2f From Corynebacterium Ammoniagenes In Its Mn
Substituted Form
pdb|1KGP|C Chain C, R2f From Corynebacterium Ammoniagenes In Its Mn
Substituted Form
pdb|1KGP|D Chain D, R2f From Corynebacterium Ammoniagenes In Its Mn
Substituted Form
pdb|1KGO|A Chain A, R2f From Corynebacterium Ammoniagenes In Its Reduced, Fe
Containing, Form
pdb|1KGO|B Chain B, R2f From Corynebacterium Ammoniagenes In Its Reduced, Fe
Containing, Form
pdb|1KGO|C Chain C, R2f From Corynebacterium Ammoniagenes In Its Reduced, Fe
Containing, Form
pdb|1KGO|D Chain D, R2f From Corynebacterium Ammoniagenes In Its Reduced, Fe
Containing, Form
Length = 329
Score = 25.4 bits (54), Expect = 8.3
Identities = 31/158 (19%), Positives = 65/158 (40%), Gaps = 10/158 (6%)
Query: 71 HQEKLLNQCMLSQALKAMGDAELCVFLAS---VHDDLKGYEEFLSLCQKPHILA--LSKI 125
H+E + +++ A + + + LAS +++ + EE +L +K I+ +
Sbjct: 96 HEEAVYTNIAFMESVHAKSYSNIFMTLASTPQINEAFRWSEENENLQRKAKIIMSYYNGD 155
Query: 126 DTATHKQVLQKLQEYQQYDSQFLALVPLSAKKSQNLNALLECI----SQHLSPSAWLFEK 181
D K L+ + Y +L + S K N ++ I S H + +++
Sbjct: 156 DPLKKKVASTLLESFLFYSGFYLPMYLSSRAKLTNTADIIRLIIRDESVHGYYIGYKYQQ 215
Query: 182 DLMS-DEKMRDIYKEIIRESLFDFLSDEIPYESDVMID 218
+ E ++ YK + ++D +EI Y D+ D
Sbjct: 216 GVKKLSEAEQEEYKAYTFDLMYDLYENEIEYTEDIYDD 253
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.134 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,628,658
Number of Sequences: 13198
Number of extensions: 61837
Number of successful extensions: 255
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 241
Number of HSP's gapped (non-prelim): 20
length of query: 302
length of database: 2,899,336
effective HSP length: 88
effective length of query: 214
effective length of database: 1,737,912
effective search space: 371913168
effective search space used: 371913168
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)