BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645145|ref|NP_207315.1| conserved hypothetical
secreted protein [Helicobacter pylori 26695]
(330 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1B47|A Chain A, Structure Of The N-Terminal Domain Of C... 26 5.5
pdb|1DCN|D Chain D, Inactive Mutant H162n Of Delta 2 Crysta... 26 5.5
pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring ... 26 5.5
pdb|2CBL|A Chain A, N-Terminal Domain Of Cbl In Complex Wit... 26 5.5
pdb|1DCN|C Chain C, Inactive Mutant H162n Of Delta 2 Crysta... 26 5.5
pdb|1DCN|A Chain A, Inactive Mutant H162n Of Delta 2 Crysta... 26 5.5
pdb|1TIS| Thymidylate Sythase (E.C.2.1.1.45) 26 7.1
pdb|1HY1|C Chain C, Crystal Structure Of Wild Type Duck Del... 26 7.1
pdb|1AUW|A Chain A, H91n Delta 2 Crystallin From Duck >gi|2... 26 7.1
pdb|1K7W|D Chain D, Crystal Structure Of S283a Duck Delta 2... 26 7.1
pdb|1BOL|A Chain A, The Crystal Structure Of Ribonuclease R... 25 9.3
>pdb|1B47|A Chain A, Structure Of The N-Terminal Domain Of Cbl In Complex With
Its Binding Site In Zap-70
pdb|1B47|C Chain C, Structure Of The N-Terminal Domain Of Cbl In Complex With
Its Binding Site In Zap-70
pdb|1B47|B Chain B, Structure Of The N-Terminal Domain Of Cbl In Complex With
Its Binding Site In Zap-70
Length = 304
Score = 26.2 bits (56), Expect = 5.5
Identities = 17/72 (23%), Positives = 31/72 (42%), Gaps = 3/72 (4%)
Query: 207 PSTKEELSMILSSLFQWKEAWARGDFERYMRFYNPNFTRYDGMKFNAFKEYKKRVFAKNE 266
P T + L ILS E + Y R + N + + FKE K+R++ +N
Sbjct: 43 PDTYQHLRTILSRYEGKMETLGENE---YFRVFMENLMKKTKQTISLFKEGKERMYEENS 99
Query: 267 KKNIAFSSINVI 278
+ + +++I
Sbjct: 100 QPRRNLTKLSLI 111
>pdb|1DCN|D Chain D, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
Length = 436
Score = 26.2 bits (56), Expect = 5.5
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 209 TKEELSMILSSLFQWKEAWARGDF 232
TK EL+ ILS L + E W++G F
Sbjct: 38 TKTELAKILSGLEKISEEWSKGVF 61
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 26.2 bits (56), Expect = 5.5
Identities = 17/72 (23%), Positives = 31/72 (42%), Gaps = 3/72 (4%)
Query: 207 PSTKEELSMILSSLFQWKEAWARGDFERYMRFYNPNFTRYDGMKFNAFKEYKKRVFAKNE 266
P T + L ILS E + Y R + N + + FKE K+R++ +N
Sbjct: 43 PDTYQHLRTILSRYEGKMETLGENE---YFRVFMENLMKKTKQTISLFKEGKERMYEENS 99
Query: 267 KKNIAFSSINVI 278
+ + +++I
Sbjct: 100 QPRRNLTKLSLI 111
>pdb|2CBL|A Chain A, N-Terminal Domain Of Cbl In Complex With Its Binding Site
On Zap-70
Length = 305
Score = 26.2 bits (56), Expect = 5.5
Identities = 17/72 (23%), Positives = 31/72 (42%), Gaps = 3/72 (4%)
Query: 207 PSTKEELSMILSSLFQWKEAWARGDFERYMRFYNPNFTRYDGMKFNAFKEYKKRVFAKNE 266
P T + L ILS E + Y R + N + + FKE K+R++ +N
Sbjct: 43 PDTYQHLRTILSRYEGKMETLGENE---YFRVFMENLMKKTKQTISLFKEGKERMYEENS 99
Query: 267 KKNIAFSSINVI 278
+ + +++I
Sbjct: 100 QPRRNLTKLSLI 111
>pdb|1DCN|C Chain C, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
Length = 434
Score = 26.2 bits (56), Expect = 5.5
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 209 TKEELSMILSSLFQWKEAWARGDF 232
TK EL+ ILS L + E W++G F
Sbjct: 40 TKTELAKILSGLEKISEEWSKGVF 63
>pdb|1DCN|A Chain A, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
Length = 424
Score = 26.2 bits (56), Expect = 5.5
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 209 TKEELSMILSSLFQWKEAWARGDF 232
TK EL+ ILS L + E W++G F
Sbjct: 26 TKTELAKILSGLEKISEEWSKGVF 49
>pdb|1TIS| Thymidylate Sythase (E.C.2.1.1.45)
Length = 286
Score = 25.8 bits (55), Expect = 7.1
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 41 DSYLADKSFWAEELQNKDTDFGYYQNK 67
DS + K+ W E +N+ D GY+ +
Sbjct: 78 DSLIQGKTVWDENYENQAKDLGYHSGE 104
>pdb|1HY1|C Chain C, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|D Chain D, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|A Chain A, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|B Chain B, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
Length = 468
Score = 25.8 bits (55), Expect = 7.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 209 TKEELSMILSSLFQWKEAWARGDF 232
TK EL ILS L + E W++G F
Sbjct: 58 TKTELEKILSGLEKISEEWSKGVF 81
>pdb|1AUW|A Chain A, H91n Delta 2 Crystallin From Duck
pdb|1AUW|B Chain B, H91n Delta 2 Crystallin From Duck
pdb|1AUW|C Chain C, H91n Delta 2 Crystallin From Duck
pdb|1AUW|D Chain D, H91n Delta 2 Crystallin From Duck
Length = 468
Score = 25.8 bits (55), Expect = 7.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 209 TKEELSMILSSLFQWKEAWARGDF 232
TK EL ILS L + E W++G F
Sbjct: 58 TKTELEKILSGLEKISEEWSKGVF 81
>pdb|1K7W|D Chain D, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|A Chain A, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|C Chain C, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|B Chain B, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
Length = 468
Score = 25.8 bits (55), Expect = 7.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 209 TKEELSMILSSLFQWKEAWARGDF 232
TK EL ILS L + E W++G F
Sbjct: 58 TKTELEKILSGLEKISEEWSKGVF 81
>pdb|1BOL|A Chain A, The Crystal Structure Of Ribonuclease Rh From Rhizopus
Niveus At 2.0 A Resolution
Length = 222
Score = 25.4 bits (54), Expect = 9.3
Identities = 16/90 (17%), Positives = 33/90 (35%)
Query: 48 SFWAEELQNKDTDFGYYQNKQFLFVANKSKPSLEFYEIENNMLKKINSSKALVGSKKGDK 107
++W N + + + +K V+ + YE +++ + L K
Sbjct: 89 TYWPSNQGNNNVFWSHEWSKHGTCVSTYDPDCYDNYEEGEDIVDYFQKAMDLRSQYNVYK 148
Query: 108 TLEGDLATPIGVYRITQKLERLDQYYGVLA 137
+ TP G Y T+ ++ Y+G A
Sbjct: 149 AFSSNGITPGGTYTATEMQSAIESYFGAKA 178
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.318 0.136 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,006,168
Number of Sequences: 13198
Number of extensions: 84758
Number of successful extensions: 207
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 199
Number of HSP's gapped (non-prelim): 11
length of query: 330
length of database: 2,899,336
effective HSP length: 89
effective length of query: 241
effective length of database: 1,724,714
effective search space: 415656074
effective search space used: 415656074
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)