BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645146|ref|NP_207316.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(276 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1KLX|A Chain A, Helicobacter Pylori Cysteine Rich Prote... 54 3e-08
pdb|1JUH|A Chain A, Crystal Structure Of Quercetin 2,3-Diox... 26 5.7
pdb|1DBO|A Chain A, Crystal Structure Of Chondroitinase B >... 25 7.4
pdb|1EJI|A Chain A, Recombinant Serine Hydroxymethyltransfe... 25 9.7
pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta >g... 25 9.7
pdb|1IRU|L Chain L, Crystal Structure Of The Mammalian 20s ... 25 9.7
>pdb|1KLX|A Chain A, Helicobacter Pylori Cysteine Rich Protein B (Hcpb)
Length = 138
Score = 53.5 bits (127), Expect = 3e-08
Identities = 37/101 (36%), Positives = 51/101 (49%), Gaps = 5/101 (4%)
Query: 66 QQAFKDFRLAQEYSIGLGSVYLAKMYLEGKGVKVDYKKA-QFYAENAIKGYGSGLLGGAL 124
Q+ F+ A E + G G +L Y GK VK D +KA Q+Y+ K G G L
Sbjct: 42 QKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYS----KACGLNDQDGCL 97
Query: 125 ILGRMQAEGLGMKKDLKQALKTYRHVVRMFSNKSTNFANNF 165
ILG Q G G+ K+ KQA+KT+ R+ S + NN+
Sbjct: 98 ILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACGILNNY 138
>pdb|1JUH|A Chain A, Crystal Structure Of Quercetin 2,3-Dioxygenase
pdb|1JUH|B Chain B, Crystal Structure Of Quercetin 2,3-Dioxygenase
pdb|1JUH|C Chain C, Crystal Structure Of Quercetin 2,3-Dioxygenase
pdb|1JUH|D Chain D, Crystal Structure Of Quercetin 2,3-Dioxygenase
pdb|1GQG|A Chain A, Quercetin 2,3-Dioxygenase In Complex With The Inhibitor
Diethyldithiocarbamate
pdb|1GQG|B Chain B, Quercetin 2,3-Dioxygenase In Complex With The Inhibitor
Diethyldithiocarbamate
pdb|1GQG|C Chain C, Quercetin 2,3-Dioxygenase In Complex With The Inhibitor
Diethyldithiocarbamate
pdb|1GQG|D Chain D, Quercetin 2,3-Dioxygenase In Complex With The Inhibitor
Diethyldithiocarbamate
pdb|1GQH|A Chain A, Quercetin 2,3-Dioxygenase In Complex With The Inhibitor
Kojic Acid
pdb|1GQH|B Chain B, Quercetin 2,3-Dioxygenase In Complex With The Inhibitor
Kojic Acid
pdb|1GQH|C Chain C, Quercetin 2,3-Dioxygenase In Complex With The Inhibitor
Kojic Acid
pdb|1GQH|D Chain D, Quercetin 2,3-Dioxygenase In Complex With The Inhibitor
Kojic Acid
Length = 350
Score = 25.8 bits (55), Expect = 5.7
Identities = 17/74 (22%), Positives = 30/74 (39%), Gaps = 9/74 (12%)
Query: 86 YLAKMYLEGKGVKVDYKKAQFYAENAIKGYGSGLLGGALILGRMQAEGLGMKKDLKQALK 145
Y+ + Y + V VD + +FY GY L+G ++ LG+ + Q
Sbjct: 17 YVIRHYSHARAVTVDTQLYRFYVTGPSSGYAFTLMG----TNAPHSDALGVLPHIHQ--- 69
Query: 146 TYRHVVRMFSNKST 159
+H + NK +
Sbjct: 70 --KHYENFYCNKGS 81
>pdb|1DBO|A Chain A, Crystal Structure Of Chondroitinase B
pdb|1DBG|A Chain A, Crystal Structure Of Chondroitinase B
Length = 506
Score = 25.4 bits (54), Expect = 7.4
Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
Query: 29 CIADEYISISDDWD-EIV--RNHKTYYFEN------GLDHFNQGQYQQAFKDFRLAQEYS 79
C+ D + + D + EI+ ++ + Y+ N G +F G +Q A +F + +
Sbjct: 230 CLVDSNLFMRQDSEAEIITSKSQENVYYGNTYLNCQGTMNFRHGDHQVAINNFYIGNDQR 289
Query: 80 IGLGSVYL 87
G G +++
Sbjct: 290 FGYGGMFV 297
>pdb|1EJI|A Chain A, Recombinant Serine Hydroxymethyltransferase (Mouse)
pdb|1EJI|B Chain B, Recombinant Serine Hydroxymethyltransferase (Mouse)
pdb|1EJI|C Chain C, Recombinant Serine Hydroxymethyltransferase (Mouse)
pdb|1EJI|D Chain D, Recombinant Serine Hydroxymethyltransferase (Mouse)
Length = 478
Score = 25.0 bits (53), Expect = 9.7
Identities = 15/42 (35%), Positives = 21/42 (49%), Gaps = 7/42 (16%)
Query: 132 EGLGMKKDLKQALKTYRHVVRMFSNKSTNFANNFRLPNLAEF 173
E L + ++ A+ T R V NFA+NF LP L +F
Sbjct: 444 EKLAGDEKIQSAVATLREEVE-------NFASNFSLPGLPDF 478
>pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta
pdb|1JAD|B Chain B, C-Terminal Domain Of Turkey Plc-Beta
Length = 251
Score = 25.0 bits (53), Expect = 9.7
Identities = 15/55 (27%), Positives = 27/55 (48%), Gaps = 1/55 (1%)
Query: 222 ISSNITLLKQQMGEILYRIGIAYKEGLGTRKKKDRAKKFLQKSAEFGYEKAMEAL 276
+ S + LK+++ L +G Y +G+ R+K+ A + K E EK + L
Sbjct: 72 LDSQVVELKERLEXELIHLGEEYHDGIR-RRKEQHATEQTAKITELAREKQIAEL 125
>pdb|1IRU|L Chain L, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|Z Chain Z, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 204
Score = 25.0 bits (53), Expect = 9.7
Identities = 17/58 (29%), Positives = 28/58 (47%), Gaps = 2/58 (3%)
Query: 78 YSIGLGSVYLAKMYLEGKGVKVDYKKAQFYAENAI--KGYGSGLLGGALILGRMQAEG 133
+S+G GSVY + G ++ ++A A AI Y GGA+ L ++ +G
Sbjct: 126 FSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHVREDG 183
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.322 0.140 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,543,249
Number of Sequences: 13198
Number of extensions: 63583
Number of successful extensions: 126
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 122
Number of HSP's gapped (non-prelim): 6
length of query: 276
length of database: 2,899,336
effective HSP length: 87
effective length of query: 189
effective length of database: 1,751,110
effective search space: 330959790
effective search space used: 330959790
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)