BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645149|ref|NP_207319.1| cag pathogenicity island
protein (cag4) [Helicobacter pylori 26695]
(169 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1JYL|A Chain A, Catalytic Mechanism Of Ctp:phosphocholi... 27 0.93
pdb|1JYK|A Chain A, Catalytic Mechanism Of Ctp:phosphocholi... 27 0.93
pdb|1E8W|A Chain A, Structure Determinants Of Phosphoinosit... 25 4.6
pdb|1E7U|A Chain A, Structure Determinants Of Phosphoinosit... 25 4.6
pdb|1EB0|A Chain A, Crystal Structure Of Bacillus Pasteurii... 25 4.6
pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The... 25 4.6
pdb|1E8Y|A Chain A, Structure Determinants Of Phosphoinosit... 25 6.1
pdb|1HE8|A Chain A, Ras G12v - Pi 3-Kinase Gamma Complex 25 6.1
>pdb|1JYL|A Chain A, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
pdb|1JYL|B Chain B, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
pdb|1JYL|C Chain C, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
pdb|1JYL|D Chain D, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
Length = 254
Score = 27.3 bits (59), Expect = 0.93
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 79 ITLNTAKKFYPTYSKTLLKFKL--LNDVGFA-IQLAKQILKENFDYYKQKHPNKSVY 132
+T NT K K L+++++ L + G I + LKE FDY K+K+ + V+
Sbjct: 42 LTENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYLKEQFDYLKEKYGVRLVF 98
>pdb|1JYK|A Chain A, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
Length = 254
Score = 27.3 bits (59), Expect = 0.93
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 79 ITLNTAKKFYPTYSKTLLKFKL--LNDVGFA-IQLAKQILKENFDYYKQKHPNKSVY 132
+T NT K K L+++++ L + G I + LKE FDY K+K+ + V+
Sbjct: 42 LTENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYLKEQFDYLKEKYGVRLVF 98
>pdb|1E8W|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
pdb|1E7V|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
pdb|1E90|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
pdb|1E8X|A Chain A, Structural Insights Into Phoshoinositide 3-Kinase
Enzymatic Mechanism And Signalling
Length = 961
Score = 25.0 bits (53), Expect = 4.6
Identities = 23/95 (24%), Positives = 38/95 (39%), Gaps = 10/95 (10%)
Query: 16 AYPCQKVTISFKQYENLLHIHQKGCDNEVMCRTLISIALLESSLGLNNRRE--------- 66
AYP ++ + Q E + +Q EV ++ + + L L N E
Sbjct: 447 AYPKLFSSVKWGQQEIVAKTYQLLAKREVWDQSALDVGLTMQLLDCNFSDENVRAIAVQK 506
Query: 67 -KSLKDTSYSMFHITLNTAKKFYPTYSKTLLKFKL 100
+SL+D + + L A KF P + L +F L
Sbjct: 507 LESLEDDDVLHYLLQLVQAVKFEPYHDSALARFLL 541
>pdb|1E7U|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
Length = 961
Score = 25.0 bits (53), Expect = 4.6
Identities = 23/95 (24%), Positives = 38/95 (39%), Gaps = 10/95 (10%)
Query: 16 AYPCQKVTISFKQYENLLHIHQKGCDNEVMCRTLISIALLESSLGLNNRRE--------- 66
AYP ++ + Q E + +Q EV ++ + + L L N E
Sbjct: 447 AYPKLFSSVKWGQQEIVAKTYQLLAKREVWDQSALDVGLTMQLLDCNFSDENVRAIAVQK 506
Query: 67 -KSLKDTSYSMFHITLNTAKKFYPTYSKTLLKFKL 100
+SL+D + + L A KF P + L +F L
Sbjct: 507 LESLEDDDVLHYLLQLVQAVKFEPYHDSALARFLL 541
>pdb|1EB0|A Chain A, Crystal Structure Of Bacillus Pasteurii Uree At 1.85 A,
Phased By Siras. Type I Crystal Form.
pdb|1EAR|A Chain A, Crystal Structure Of Bacillus Pasteurii Uree At 1.7 A.
Type Ii Crystal Form
Length = 147
Score = 25.0 bits (53), Expect = 4.6
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 91 YSKTLLKFKLLNDVGFAIQLAKQILKENFDYYKQKH 126
Y KTL K L+++VG + + +++ KE F Y +H
Sbjct: 114 YDKTLEK--LIDEVGVSYEQSERRFKEPFKYRGHQH 147
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 25.0 bits (53), Expect = 4.6
Identities = 12/32 (37%), Positives = 19/32 (58%), Gaps = 1/32 (3%)
Query: 66 EKSLKDTSY-SMFHITLNTAKKFYPTYSKTLL 96
+ +L+ ++Y S+ I N+AK YP KT L
Sbjct: 521 QNNLRSSAYESLMEIVKNSAKDCYPAVQKTTL 552
>pdb|1E8Y|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
pdb|1E8Z|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
Length = 966
Score = 24.6 bits (52), Expect = 6.1
Identities = 23/95 (24%), Positives = 38/95 (39%), Gaps = 10/95 (10%)
Query: 16 AYPCQKVTISFKQYENLLHIHQKGCDNEVMCRTLISIALLESSLGLNNRRE--------- 66
AYP ++ + Q E + +Q EV ++ + + L L N E
Sbjct: 446 AYPKLFSSVKWGQQEIVAKTYQLLARREVWDQSALDVGLTMQLLDCNFSDENVRAIAVQK 505
Query: 67 -KSLKDTSYSMFHITLNTAKKFYPTYSKTLLKFKL 100
+SL+D + + L A KF P + L +F L
Sbjct: 506 LESLEDDDVLHYLLQLVQAVKFEPYHDSALARFLL 540
>pdb|1HE8|A Chain A, Ras G12v - Pi 3-Kinase Gamma Complex
Length = 965
Score = 24.6 bits (52), Expect = 6.1
Identities = 23/95 (24%), Positives = 38/95 (39%), Gaps = 10/95 (10%)
Query: 16 AYPCQKVTISFKQYENLLHIHQKGCDNEVMCRTLISIALLESSLGLNNRRE--------- 66
AYP ++ + Q E + +Q EV ++ + + L L N E
Sbjct: 445 AYPKLFSSVKWGQQEIVAKTYQLLARREVWDQSALDVGLTMQLLDCNFSDENVRAIAVQK 504
Query: 67 -KSLKDTSYSMFHITLNTAKKFYPTYSKTLLKFKL 100
+SL+D + + L A KF P + L +F L
Sbjct: 505 LESLEDDDVLHYLLQLVQAVKFEPYHDSALARFLL 539
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.321 0.136 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 956,997
Number of Sequences: 13198
Number of extensions: 35144
Number of successful extensions: 71
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 71
Number of HSP's gapped (non-prelim): 8
length of query: 169
length of database: 2,899,336
effective HSP length: 82
effective length of query: 87
effective length of database: 1,817,100
effective search space: 158087700
effective search space used: 158087700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)