BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645150|ref|NP_207320.1| cag pathogenicity island
protein (cag5) [Helicobacter pylori 26695]
(748 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1E3L|A Chain A, P47h Mutant Of Mouse Class Ii Alcohol D... 29 2.2
pdb|1E3I|A Chain A, Mouse Class Ii Alcohol Dehydrogenase Co... 29 2.2
pdb|1AFR|A Chain A, Stearoyl-Acyl Carrier Protein Desaturas... 29 2.2
pdb|1JK9|B Chain B, Heterodimer Between H48f-Ysod1 And Yccs... 27 8.3
pdb|2AZA|A Chain A, Azurin (Oxidized) >gi|230432|pdb|2AZA|B... 27 8.3
pdb|1URI|A Chain A, Azurin Mutant With Met 121 Replaced By ... 27 8.3
pdb|1A4A|A Chain A, Azurin Mutant With Met 121 Replaced By ... 27 8.3
pdb|1M9I|A Chain A, Crystal Structure Of Phosphorylation-Mi... 27 8.3
pdb|1AIZ|A Chain A, Azurin (Cadmium Form) (Cadmium-Azurin) ... 27 8.3
pdb|1QUP|A Chain A, Crystal Structure Of The Copper Chapero... 27 8.3
pdb|1AVC| Bovine Annexin Vi (Calcium-Bound) 27 8.3
pdb|1EJ8|A Chain A, Crystal Structure Of Domain 2 Of The Ye... 27 8.3
>pdb|1E3L|A Chain A, P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase
Complex With Nadh
pdb|1E3L|B Chain B, P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase
Complex With Nadh
Length = 376
Score = 28.9 bits (63), Expect = 2.2
Identities = 13/29 (44%), Positives = 15/29 (50%)
Query: 533 ILPIHDPQCKRSCLMLMDEFTLCGYLETF 561
++P PQCKR L L LCG L F
Sbjct: 89 VIPFFAPQCKRCKLCLSPLTNLCGKLRNF 117
>pdb|1E3I|A Chain A, Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh And
Inhibitor
pdb|1E3E|A Chain A, Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh
pdb|1E3I|B Chain B, Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh And
Inhibitor
pdb|1E3E|B Chain B, Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh
Length = 376
Score = 28.9 bits (63), Expect = 2.2
Identities = 13/29 (44%), Positives = 15/29 (50%)
Query: 533 ILPIHDPQCKRSCLMLMDEFTLCGYLETF 561
++P PQCKR L L LCG L F
Sbjct: 89 VIPFFAPQCKRCKLCLSPLTNLCGKLRNF 117
>pdb|1AFR|A Chain A, Stearoyl-Acyl Carrier Protein Desaturase From Castor Seeds
pdb|1AFR|B Chain B, Stearoyl-Acyl Carrier Protein Desaturase From Castor Seeds
pdb|1AFR|C Chain C, Stearoyl-Acyl Carrier Protein Desaturase From Castor Seeds
pdb|1AFR|D Chain D, Stearoyl-Acyl Carrier Protein Desaturase From Castor Seeds
pdb|1AFR|E Chain E, Stearoyl-Acyl Carrier Protein Desaturase From Castor Seeds
pdb|1AFR|F Chain F, Stearoyl-Acyl Carrier Protein Desaturase From Castor Seeds
Length = 345
Score = 28.9 bits (63), Expect = 2.2
Identities = 11/44 (25%), Positives = 26/44 (59%)
Query: 604 NLSLNMYYGINNDNYYEHFEKLSKVLGKYTRQDVSRSIDDNTGK 647
++ ++ Y +DN ++HF +++ LG YT +D + ++ G+
Sbjct: 246 SMPAHLMYDGRDDNLFDHFSAVAQRLGVYTAKDYADILEFLVGR 289
>pdb|1JK9|B Chain B, Heterodimer Between H48f-Ysod1 And Yccs
pdb|1JK9|D Chain D, Heterodimer Between H48f-Ysod1 And Yccs
Length = 249
Score = 26.9 bits (58), Expect = 8.3
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 9/100 (9%)
Query: 168 LTRTRDIGANKKVDDLF-------GSASWETEEKMIKAKLITPNNKK-RAFDKREVIVGR 219
L R +G NK + D+ G+ EK +K + K FD+
Sbjct: 103 LARIVQVGENKTLFDITVNGVPEAGNYHASIHEKGDVSKGVESTGKVWHKFDEPIECFNE 162
Query: 220 RGLGDFIAYAGQAFIGLIAPTRSGKGVGFIMPNMINYPQN 259
LG + Y+G+ F+ PT G F++ +N+P+N
Sbjct: 163 SDLGKNL-YSGKTFLSAPLPTWQLIGRSFVISKSLNHPEN 201
>pdb|2AZA|A Chain A, Azurin (Oxidized)
pdb|2AZA|B Chain B, Azurin (Oxidized)
Length = 129
Score = 26.9 bits (58), Expect = 8.3
Identities = 16/53 (30%), Positives = 25/53 (46%), Gaps = 4/53 (7%)
Query: 307 GNDVVLTEDILSQIDTRLKGHGMVASGGDFSTQIFGLAKLVFPERPNEKDPFF 359
G + L +D + DTR+ H V GG+ + F ++KL P E +F
Sbjct: 63 GMNAGLAQDYVKAGDTRVIAHTKVIGGGESDSVTFDVSKLT----PGEAYAYF 111
>pdb|1URI|A Chain A, Azurin Mutant With Met 121 Replaced By Gln
pdb|1URI|B Chain B, Azurin Mutant With Met 121 Replaced By Gln
Length = 129
Score = 26.9 bits (58), Expect = 8.3
Identities = 16/53 (30%), Positives = 25/53 (46%), Gaps = 4/53 (7%)
Query: 307 GNDVVLTEDILSQIDTRLKGHGMVASGGDFSTQIFGLAKLVFPERPNEKDPFF 359
G + L +D + DTR+ H V GG+ + F ++KL P E +F
Sbjct: 63 GMNAGLAQDYVKAGDTRVIAHTKVIGGGESDSVTFDVSKLT----PGEAYAYF 111
>pdb|1A4A|A Chain A, Azurin Mutant With Met 121 Replaced By His, Ph 6.5 Crystal
Form, Data Collected At 16 Degrees Celsius
pdb|1A4A|B Chain B, Azurin Mutant With Met 121 Replaced By His, Ph 6.5 Crystal
Form, Data Collected At 16 Degrees Celsius
pdb|1A4B|A Chain A, Azurin Mutant With Met 121 Replaced By His, Ph 6.5 Crystal
Form, Data Collected At -180 Degrees Celsius
pdb|1A4B|B Chain B, Azurin Mutant With Met 121 Replaced By His, Ph 6.5 Crystal
Form, Data Collected At -180 Degrees Celsius
pdb|1A4C|A Chain A, Azurin Mutant With Met 121 Replaced By His, Ph 3.5 Crystal
Form, Data Collected At -180 Degrees Celsius
pdb|1A4C|B Chain B, Azurin Mutant With Met 121 Replaced By His, Ph 3.5 Crystal
Form, Data Collected At -180 Degrees Celsius
pdb|1A4C|C Chain C, Azurin Mutant With Met 121 Replaced By His, Ph 3.5 Crystal
Form, Data Collected At -180 Degrees Celsius
pdb|1A4C|D Chain D, Azurin Mutant With Met 121 Replaced By His, Ph 3.5 Crystal
Form, Data Collected At -180 Degrees Celsius
Length = 129
Score = 26.9 bits (58), Expect = 8.3
Identities = 16/53 (30%), Positives = 25/53 (46%), Gaps = 4/53 (7%)
Query: 307 GNDVVLTEDILSQIDTRLKGHGMVASGGDFSTQIFGLAKLVFPERPNEKDPFF 359
G + L +D + DTR+ H V GG+ + F ++KL P E +F
Sbjct: 63 GMNAGLAQDYVKAGDTRVIAHTKVIGGGESDSVTFDVSKLT----PGEAYAYF 111
>pdb|1M9I|A Chain A, Crystal Structure Of Phosphorylation-Mimicking Mutant
T356d Of Annexin Vi
Length = 672
Score = 26.9 bits (58), Expect = 8.3
Identities = 16/65 (24%), Positives = 30/65 (45%)
Query: 387 VKRKKIIMPETPTMFFIGSMASGINLIDEDTNMEKVVSLMEFFGGEEDKSGDNLRVLSPA 446
V R ++ M + +F S ++I DT+ E +L++ GG++D +G +
Sbjct: 278 VSRSELDMLDIREIFRTKYEKSLYSMIKNDTSGEYKKTLLKLSGGDDDAAGQFFPEAAQV 337
Query: 447 TRNMW 451
MW
Sbjct: 338 AYQMW 342
>pdb|1AIZ|A Chain A, Azurin (Cadmium Form) (Cadmium-Azurin)
pdb|1AIZ|B Chain B, Azurin (Cadmium Form) (Cadmium-Azurin)
pdb|1AZC|A Chain A, Azurin (Apo Form)
pdb|1AZC|B Chain B, Azurin (Apo Form)
pdb|1AZB|A Chain A, Azurin (Copper-Removed)
pdb|1AZB|B Chain B, Azurin (Copper-Removed)
Length = 129
Score = 26.9 bits (58), Expect = 8.3
Identities = 16/53 (30%), Positives = 25/53 (46%), Gaps = 4/53 (7%)
Query: 307 GNDVVLTEDILSQIDTRLKGHGMVASGGDFSTQIFGLAKLVFPERPNEKDPFF 359
G + L +D + DTR+ H V GG+ + F ++KL P E +F
Sbjct: 63 GMNAGLAQDYVKAGDTRVIAHTKVIGGGESDSVTFDVSKLT----PGEAYAYF 111
>pdb|1QUP|A Chain A, Crystal Structure Of The Copper Chaperone For Superoxide
Dismutase
pdb|1QUP|B Chain B, Crystal Structure Of The Copper Chaperone For Superoxide
Dismutase
Length = 222
Score = 26.9 bits (58), Expect = 8.3
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 9/100 (9%)
Query: 168 LTRTRDIGANKKVDDLF-------GSASWETEEKMIKAKLITPNNKK-RAFDKREVIVGR 219
L R +G NK + D+ G+ EK +K + K FD+
Sbjct: 102 LARIVQVGENKTLFDITVNGVPEAGNYHASIHEKGDVSKGVESTGKVWHKFDEPIECFNE 161
Query: 220 RGLGDFIAYAGQAFIGLIAPTRSGKGVGFIMPNMINYPQN 259
LG + Y+G+ F+ PT G F++ +N+P+N
Sbjct: 162 SDLGKNL-YSGKTFLSAPLPTWQLIGRSFVISKSLNHPEN 200
>pdb|1AVC| Bovine Annexin Vi (Calcium-Bound)
Length = 673
Score = 26.9 bits (58), Expect = 8.3
Identities = 16/65 (24%), Positives = 30/65 (45%)
Query: 387 VKRKKIIMPETPTMFFIGSMASGINLIDEDTNMEKVVSLMEFFGGEEDKSGDNLRVLSPA 446
V R ++ M + +F S ++I DT+ E +L++ GG++D +G +
Sbjct: 279 VSRSELDMLDIREIFRTKYEKSLYSMIKNDTSGEYKKTLLKLCGGDDDAAGQFFPEAAQV 338
Query: 447 TRNMW 451
MW
Sbjct: 339 AYQMW 343
>pdb|1EJ8|A Chain A, Crystal Structure Of Domain 2 Of The Yeast Copper
Chaperone For Superoxide Dismutase (Lys7) At 1.55 A
Resolution
Length = 140
Score = 26.9 bits (58), Expect = 8.3
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 9/100 (9%)
Query: 168 LTRTRDIGANKKVDDLF-------GSASWETEEKMIKAKLITPNNKK-RAFDKREVIVGR 219
L R +G NK + D+ G+ EK +K + K FD+
Sbjct: 26 LARIVQVGENKTLFDITVNGVPEAGNYHASIHEKGDVSKGVESTGKVWHKFDEPIECFNE 85
Query: 220 RGLGDFIAYAGQAFIGLIAPTRSGKGVGFIMPNMINYPQN 259
LG + Y+G+ F+ PT G F++ +N+P+N
Sbjct: 86 SDLGKNL-YSGKTFLSAPLPTWQLIGRSFVISKSLNHPEN 124
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.323 0.141 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,449,123
Number of Sequences: 13198
Number of extensions: 194205
Number of successful extensions: 348
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 343
Number of HSP's gapped (non-prelim): 12
length of query: 748
length of database: 2,899,336
effective HSP length: 95
effective length of query: 653
effective length of database: 1,645,526
effective search space: 1074528478
effective search space used: 1074528478
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)