BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644684|ref|NP_206854.1| hypothetical protein
[Helicobacter pylori 26695]
(419 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1E6Y|E Chain E, Methyl-Coenzyme M Reductase From Methan... 28 1.9
pdb|2BSP|A Chain A, Bacillus Subtilis Pectate Lyase R279k M... 28 2.5
pdb|1BN8|A Chain A, Bacillus Subtilis Pectate Lyase 28 2.5
pdb|1NOY|A Chain A, T4 Dna Polymerase Fragment (Residues 1-... 27 4.3
pdb|1THG| Lipase (E.C.3.1.1.3) Triacylglycerol Hydrolase 26 9.6
>pdb|1E6Y|E Chain E, Methyl-Coenzyme M Reductase From Methanosarcina Barkeri
pdb|1E6Y|B Chain B, Methyl-Coenzyme M Reductase From Methanosarcina Barkeri
Length = 433
Score = 28.1 bits (61), Expect = 1.9
Identities = 17/56 (30%), Positives = 26/56 (46%)
Query: 4 QSMIDFLKLRDYDIRKTQNARWIDQKCTPDVLSLVADCILEFTQCNIGKSFSIRDI 59
Q+++D YD ++A W T D++ IL Q N G FS+R+I
Sbjct: 136 QTIMDMFGTDPYDAPIVKSAVWGSYPQTMDLMGGQVQGILSIPQNNEGLGFSLRNI 191
>pdb|2BSP|A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant
Length = 420
Score = 27.7 bits (60), Expect = 2.5
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 99 AYS-GILFETKTGNRNIYTIQNIELLEYLMQRETNALKFLILYIQKVL---MDSGIYPLF 154
AYS G +K + N+YT+ N L + +ETN I+YI+ + +D + PL
Sbjct: 37 AYSTGTTGGSKASSSNVYTVSNRNQLVSALGKETNTTP-KIIYIKGTIDMNVDDNLKPLG 95
Query: 155 DNFLQKQDTESFKQLK 170
N + + + K LK
Sbjct: 96 LNDYKDPEYDLDKYLK 111
>pdb|1BN8|A Chain A, Bacillus Subtilis Pectate Lyase
Length = 420
Score = 27.7 bits (60), Expect = 2.5
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 99 AYS-GILFETKTGNRNIYTIQNIELLEYLMQRETNALKFLILYIQKVL---MDSGIYPLF 154
AYS G +K + N+YT+ N L + +ETN I+YI+ + +D + PL
Sbjct: 37 AYSTGTTGGSKASSSNVYTVSNRNQLVSALGKETNTTP-KIIYIKGTIDMNVDDNLKPLG 95
Query: 155 DNFLQKQDTESFKQLK 170
N + + + K LK
Sbjct: 96 LNDYKDPEYDLDKYLK 111
>pdb|1NOY|A Chain A, T4 Dna Polymerase Fragment (Residues 1-388) At 298k
pdb|1NOY|B Chain B, T4 Dna Polymerase Fragment (Residues 1-388) At 298k
pdb|1NOZ|A Chain A, T4 Dna Polymerase Fragment (Residues 1-388) At 110k
pdb|1NOZ|B Chain B, T4 Dna Polymerase Fragment (Residues 1-388) At 110k
Length = 388
Score = 26.9 bits (58), Expect = 4.3
Identities = 19/67 (28%), Positives = 29/67 (42%), Gaps = 13/67 (19%)
Query: 60 WDSPYTNENVKMIFSKPDLNSDFSMHEYDKFFSQPIKLLAYSGILFETKTGNRNIYTIQN 119
+D PY VKMI + SM + KLL + G++ IY+I
Sbjct: 218 FDVPYIMNRVKMILGER------SMKRFSPIGRVKSKLL-------QNMYGSKEIYSIDG 264
Query: 120 IELLEYL 126
+ +L+YL
Sbjct: 265 VSILDYL 271
>pdb|1THG| Lipase (E.C.3.1.1.3) Triacylglycerol Hydrolase
Length = 544
Score = 25.8 bits (55), Expect = 9.6
Identities = 10/26 (38%), Positives = 17/26 (64%)
Query: 341 CLLAKTTTILNDTQGVYDWNDYIVVL 366
CL +K++++L+D Q YD D +L
Sbjct: 288 CLRSKSSSVLHDAQNSYDLKDLFGLL 313
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.321 0.138 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,441,100
Number of Sequences: 13198
Number of extensions: 101744
Number of successful extensions: 195
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 193
Number of HSP's gapped (non-prelim): 5
length of query: 419
length of database: 2,899,336
effective HSP length: 91
effective length of query: 328
effective length of database: 1,698,318
effective search space: 557048304
effective search space used: 557048304
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)