BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645152|ref|NP_207322.1| cag pathogenicity island
protein (cag6) [Helicobacter pylori 26695]
(199 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1KTK|A Chain A, Complex Of Streptococcal Pyrogenic Ente... 26 2.7
pdb|1M6H|A Chain A, Human Glutathione-Dependent Formaldehyd... 25 6.0
>pdb|1KTK|A Chain A, Complex Of Streptococcal Pyrogenic Enterotoxin C (Spec)
With A Human T Cell Receptor Beta Chain (Vbeta2.1)
pdb|1KTK|B Chain B, Complex Of Streptococcal Pyrogenic Enterotoxin C (Spec)
With A Human T Cell Receptor Beta Chain (Vbeta2.1)
pdb|1KTK|C Chain C, Complex Of Streptococcal Pyrogenic Enterotoxin C (Spec)
With A Human T Cell Receptor Beta Chain (Vbeta2.1)
pdb|1KTK|D Chain D, Complex Of Streptococcal Pyrogenic Enterotoxin C (Spec)
With A Human T Cell Receptor Beta Chain (Vbeta2.1)
pdb|1AN8| Crystal Structure Of The Streptococcal Superantigen Spe-C
pdb|1HQR|D Chain D, Crystal Structure Of A Superantigen Bound To The High-
Affinity, Zinc-Dependent Site On Mhc Class Ii
Length = 208
Score = 26.2 bits (56), Expect = 2.7
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 9 ERQKILDSNSSLMGNANEVRDKFIQNYASSLKDSNDP---QDFLRRVQELRINMQKNFIS 65
+ KI D+ S + E+ K ++ L DS + D + ++ RI KNF
Sbjct: 142 DNYKIYDATSPYVSGRIEIGTKDGKHEQIDLFDSPNEGTRSDIFAKYKDNRIINMKNFSH 201
Query: 66 FDVY 69
FD+Y
Sbjct: 202 FDIY 205
>pdb|1M6H|A Chain A, Human Glutathione-Dependent Formaldehyde Dehydrogenase
pdb|1M6H|B Chain B, Human Glutathione-Dependent Formaldehyde Dehydrogenase
pdb|1M6W|A Chain A, Binary Complex Of Human Glutathione-Dependent Formaldehyde
Dehydrogenase And 12-Hydroxydodecanoic Acid
pdb|1M6W|B Chain B, Binary Complex Of Human Glutathione-Dependent Formaldehyde
Dehydrogenase And 12-Hydroxydodecanoic Acid
pdb|1MA0|A Chain A, Ternary Complex Of Human Glutathione-Dependent
Formaldehyde Dehydrogenase With Nad+ And Dodecanoic Acid
pdb|1MA0|B Chain B, Ternary Complex Of Human Glutathione-Dependent
Formaldehyde Dehydrogenase With Nad+ And Dodecanoic Acid
pdb|1MP0|A Chain A, Binary Complex Of Human Glutathione-Dependent Formaldehyde
Dehydrogenase With Nad(H)
pdb|1MP0|B Chain B, Binary Complex Of Human Glutathione-Dependent Formaldehyde
Dehydrogenase With Nad(H)
pdb|1TEH|A Chain A, Structure Of Human Liver Chichi Alcohol Dehydrogenase (A
Glutathione-Dependent Formaldehyde Dehydrogenase)
pdb|1TEH|B Chain B, Structure Of Human Liver Chichi Alcohol Dehydrogenase (A
Glutathione-Dependent Formaldehyde Dehydrogenase)
Length = 373
Score = 25.0 bits (53), Expect = 6.0
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 28 RDKFIQNYASSLKDSNDPQDFLRRVQELRINMQKNFISF 66
+DKF + + +PQDF + +QE+ I M + +
Sbjct: 225 KDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDY 263
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.137 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,033,260
Number of Sequences: 13198
Number of extensions: 39470
Number of successful extensions: 85
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 84
Number of HSP's gapped (non-prelim): 2
length of query: 199
length of database: 2,899,336
effective HSP length: 84
effective length of query: 115
effective length of database: 1,790,704
effective search space: 205930960
effective search space used: 205930960
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)