BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645155|ref|NP_207325.1| cag pathogenicity island
protein (cag9) [Helicobacter pylori 26695]
(535 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1KEK|A Chain A, Crystal Structure Of The Free Radical I... 26 9.7
pdb|1E7P|C Chain C, Quinol:fumarate Reductase From Wolinell... 26 9.7
pdb|1QLA|C Chain C, Respiratory Complex Ii-Like Fumarate Re... 26 9.7
pdb|1E7P|I Chain I, Quinol:fumarate Reductase From Wolinell... 26 9.7
>pdb|1KEK|A Chain A, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase
pdb|1KEK|B Chain B, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase
pdb|1B0P|A Chain A, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|1B0P|B Chain B, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|2PDA|A Chain A, Crystal Structure Of The Complex Between Pyruvate-
Ferredoxin Oxidoreductase From Desulfovibrio Africanus
And Pyruvate.
pdb|2PDA|B Chain B, Crystal Structure Of The Complex Between Pyruvate-
Ferredoxin Oxidoreductase From Desulfovibrio Africanus
And Pyruvate
Length = 1231
Score = 26.2 bits (56), Expect = 9.7
Identities = 20/61 (32%), Positives = 29/61 (46%), Gaps = 4/61 (6%)
Query: 146 SVLDNLSNKIQNFTKGGVEDNVKGNILLQIIGSITAQASTNITADGLIWLIGKEFT--AN 203
SV DN+S +N G+ED+V G L + + A + T W +G + T AN
Sbjct: 376 SVYDNMSGAKKNHFTVGIEDDVTGTSL--PVDNAFADTTPKGTIQCQFWGLGADGTVGAN 433
Query: 204 K 204
K
Sbjct: 434 K 434
>pdb|1E7P|C Chain C, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|F Chain F, Quinol:fumarate Reductase From Wolinella Succinogenes
Length = 256
Score = 26.2 bits (56), Expect = 9.7
Identities = 26/106 (24%), Positives = 44/106 (40%), Gaps = 18/106 (16%)
Query: 252 VSYLIYIVFGIFVFISFMKLRDISSNIQINIGF----EYMRFVGGTLFKMAMVSFIAYAG 307
VS+L VF +F+ +F+ +R N + + F + MR TL+ + A G
Sbjct: 79 VSFLAAFVFAVFIAHAFLAMRKFPINYRQYLTFKTHKDLMRHGDTTLWWIQ-----AMTG 133
Query: 308 FGYLYKISYSIYF---------GLAGAFGLNQVLFWALDLVLNYTV 344
F + S +Y ++ +F + W L LVL + V
Sbjct: 134 FAMFFLGSVHLYIMMTQPQTIGPVSSSFRMVSEWMWPLYLVLLFAV 179
>pdb|1QLA|C Chain C, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
pdb|1QLA|F Chain F, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
pdb|1QLB|C Chain C, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
pdb|1QLB|F Chain F, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
Length = 256
Score = 26.2 bits (56), Expect = 9.7
Identities = 26/106 (24%), Positives = 44/106 (40%), Gaps = 18/106 (16%)
Query: 252 VSYLIYIVFGIFVFISFMKLRDISSNIQINIGF----EYMRFVGGTLFKMAMVSFIAYAG 307
VS+L VF +F+ +F+ +R N + + F + MR TL+ + A G
Sbjct: 79 VSFLAAFVFAVFIAHAFLAMRKFPINYRQYLTFKTHKDLMRHGDTTLWWIQ-----AMTG 133
Query: 308 FGYLYKISYSIYF---------GLAGAFGLNQVLFWALDLVLNYTV 344
F + S +Y ++ +F + W L LVL + V
Sbjct: 134 FAMFFLGSVHLYIMMTQPQTIGPVSSSFRMVSEWMWPLYLVLLFAV 179
>pdb|1E7P|I Chain I, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|L Chain L, Quinol:fumarate Reductase From Wolinella Succinogenes
Length = 254
Score = 26.2 bits (56), Expect = 9.7
Identities = 26/106 (24%), Positives = 44/106 (40%), Gaps = 18/106 (16%)
Query: 252 VSYLIYIVFGIFVFISFMKLRDISSNIQINIGF----EYMRFVGGTLFKMAMVSFIAYAG 307
VS+L VF +F+ +F+ +R N + + F + MR TL+ + A G
Sbjct: 79 VSFLAAFVFAVFIAHAFLAMRKFPINYRQYLTFKTHKDLMRHGDTTLWWIQ-----AMTG 133
Query: 308 FGYLYKISYSIYF---------GLAGAFGLNQVLFWALDLVLNYTV 344
F + S +Y ++ +F + W L LVL + V
Sbjct: 134 FAMFFLGSVHLYIMMTQPQTIGPVSSSFRMVSEWMWPLYLVLLFAV 179
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.325 0.141 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,735,913
Number of Sequences: 13198
Number of extensions: 108631
Number of successful extensions: 277
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 277
Number of HSP's gapped (non-prelim): 4
length of query: 535
length of database: 2,899,336
effective HSP length: 93
effective length of query: 442
effective length of database: 1,671,922
effective search space: 738989524
effective search space used: 738989524
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)