BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645160|ref|NP_207330.1| cag pathogenicity island
protein (cag13) [Helicobacter pylori 26695]
(196 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1DN1|B Chain B, Crystal Structure Of The Neuronal-Sec1S... 30 0.19
pdb|1EZ3|A Chain A, Crystal Structure Of The Neuronal T-Sna... 28 0.54
pdb|1GZE|A Chain A, Structure Of The Clostridium Botulinum ... 27 2.1
pdb|1GZF|A Chain A, Structure Of The Clostridium Botulinum ... 27 2.1
pdb|1II8|A Chain A, Crystal Structure Of The P. Furiosus Ra... 26 2.7
pdb|2PHL|C Chain C, Phaseolin >gi|640273|pdb|2PHL|A Chain A... 26 3.5
pdb|1BR0|A Chain A, Three Dimensional Structure Of The N-Te... 26 3.5
pdb|1DT6|A Chain A, Structure Of Mammalian Cytochrome P450 2c5 25 4.6
pdb|5REQ|A Chain A, Methylmalonyl-Coa Mutase, Y89f Mutant, ... 25 4.6
pdb|1E1C|A Chain A, Methylmalonyl-Coa Mutase H244a Mutant >... 25 4.6
pdb|6REQ|A Chain A, Methylmalonyl-Coa Mutase, 3-Carboxyprop... 25 4.6
pdb|1HWT|C Chain C, Structure Of A Hap1DNA COMPLEX REVEALS ... 25 6.0
pdb|2HAP|C Chain C, Structure Of A Hap1-18DNA COMPLEX REVEA... 25 6.0
pdb|1I1E|A Chain A, Crystal Structure Of Clostridium Botuli... 25 6.0
pdb|1HWT|D Chain D, Structure Of A Hap1DNA COMPLEX REVEALS ... 25 6.0
pdb|2HAP|D Chain D, Structure Of A Hap1-18DNA COMPLEX REVEA... 25 6.0
pdb|1DEQ|A Chain A, The Crystal Structure Of Modified Bovin... 25 6.0
pdb|1YPP|A Chain A, Acid Anhydride Hydrolase >gi|1942887|pd... 25 7.8
pdb|1G99|A Chain A, An Ancient Enzyme: Acetate Kinase From ... 25 7.8
pdb|1HUK|A Chain A, Refined Structure Of Yeast Inorganic Py... 25 7.8
pdb|8PRK|B Chain B, The R78k And D117e Active Site Variants... 25 7.8
pdb|1HUJ|A Chain A, Refined Structure Of Yeast Inorganic Py... 25 7.8
pdb|1WGJ|B Chain B, Structure Of Inorganic Pyrophosphatase ... 25 7.8
pdb|117E|A Chain A, The R78k And D117e Active Site Variants... 25 7.8
pdb|1E9G|B Chain B, Structure Of Inorganic Pyrophosphatase 25 7.8
pdb|1E9G|A Chain A, Structure Of Inorganic Pyrophosphatase 25 7.8
pdb|1F1M|A Chain A, Crystal Structure Of Outer Surface Prot... 25 7.8
>pdb|1DN1|B Chain B, Crystal Structure Of The Neuronal-Sec1SYNTAXIN 1A COMPLEX
Length = 267
Score = 30.0 bits (66), Expect = 0.19
Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 12/100 (12%)
Query: 16 KDKKEKLIESLQENELLSTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRN---YMKDY 72
KD+ ++L + ++ D+ +D+ + M +FF+Q+ +G +DK+ N + +
Sbjct: 2 KDRTQELRTAKDSDD---DDDVTVTVDRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKH 58
Query: 73 RAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSK 112
A++ S D+ K E EL+ I + N + SK
Sbjct: 59 SAILASPNPDEKTK------EELEELMSDIKKTANKVRSK 92
>pdb|1EZ3|A Chain A, Crystal Structure Of The Neuronal T-Snare Syntaxin-1a
pdb|1EZ3|B Chain B, Crystal Structure Of The Neuronal T-Snare Syntaxin-1a
pdb|1EZ3|C Chain C, Crystal Structure Of The Neuronal T-Snare Syntaxin-1a
Length = 127
Score = 28.5 bits (62), Expect = 0.54
Identities = 20/75 (26%), Positives = 37/75 (48%), Gaps = 9/75 (12%)
Query: 41 IDQIKTMHDFFKQMHTNKGALDKVLRN---YMKDYRAVIKSIGVDKFKKVYRLLESETME 97
+D+ + M +FF+Q+ +G +DK+ N + + A++ S D+ K E E
Sbjct: 1 VDRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTK------EELEE 54
Query: 98 LLHAIAENPNFLFSK 112
L+ I + N + SK
Sbjct: 55 LMSDIKKTANKVRSK 69
>pdb|1GZE|A Chain A, Structure Of The Clostridium Botulinum C3 Exoenzyme (L177c
Mutant)
pdb|1GZE|B Chain B, Structure Of The Clostridium Botulinum C3 Exoenzyme (L177c
Mutant)
pdb|1GZE|C Chain C, Structure Of The Clostridium Botulinum C3 Exoenzyme (L177c
Mutant)
pdb|1GZE|D Chain D, Structure Of The Clostridium Botulinum C3 Exoenzyme (L177c
Mutant)
Length = 211
Score = 26.6 bits (57), Expect = 2.1
Identities = 19/87 (21%), Positives = 37/87 (41%), Gaps = 10/87 (11%)
Query: 32 LSTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLL 91
LS EK+ I+ K+ + ++ NKG ++ N +K + KS K + L
Sbjct: 28 LSKSEKEAIVSYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDKSFNKMKTPENIMLF 87
Query: 92 ESETMELLHAIAENPNFLFSKFDRSIL 118
++P +L ++F ++L
Sbjct: 88 R----------GDDPAYLGTEFQNTLL 104
>pdb|1GZF|A Chain A, Structure Of The Clostridium Botulinum C3 Exoenzyme
(Wild-Type) In Complex With Nad
pdb|1GZF|B Chain B, Structure Of The Clostridium Botulinum C3 Exoenzyme
(Wild-Type) In Complex With Nad
pdb|1GZF|C Chain C, Structure Of The Clostridium Botulinum C3 Exoenzyme
(Wild-Type) In Complex With Nad
pdb|1GZF|D Chain D, Structure Of The Clostridium Botulinum C3 Exoenzyme
(Wild-Type) In Complex With Nad
pdb|1G24|A Chain A, The Crystal Structure Of Exoenzyme C3 From Clostridium
Botulinum
pdb|1G24|B Chain B, The Crystal Structure Of Exoenzyme C3 From Clostridium
Botulinum
pdb|1G24|C Chain C, The Crystal Structure Of Exoenzyme C3 From Clostridium
Botulinum
pdb|1G24|D Chain D, The Crystal Structure Of Exoenzyme C3 From Clostridium
Botulinum
Length = 211
Score = 26.6 bits (57), Expect = 2.1
Identities = 19/87 (21%), Positives = 37/87 (41%), Gaps = 10/87 (11%)
Query: 32 LSTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLL 91
LS EK+ I+ K+ + ++ NKG ++ N +K + KS K + L
Sbjct: 28 LSKSEKEAIVSYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDKSFNKMKTPENIMLF 87
Query: 92 ESETMELLHAIAENPNFLFSKFDRSIL 118
++P +L ++F ++L
Sbjct: 88 R----------GDDPAYLGTEFQNTLL 104
>pdb|1II8|A Chain A, Crystal Structure Of The P. Furiosus Rad50 Atpase Domain
Length = 195
Score = 26.2 bits (56), Expect = 2.7
Identities = 13/51 (25%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 27 QENELLSTDE-KKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVI 76
Q + +L +DE ++K++ ++ + D F+ + L K + N +K+YR ++
Sbjct: 142 QIDAILESDEAREKVVREVLNL-DKFETAYKKLSELKKTINNRIKEYRDIL 191
>pdb|2PHL|C Chain C, Phaseolin
pdb|2PHL|A Chain A, Phaseolin
pdb|2PHL|B Chain B, Phaseolin
pdb|1PHS| Phaseolin
Length = 397
Score = 25.8 bits (55), Expect = 3.5
Identities = 18/98 (18%), Positives = 38/98 (38%)
Query: 51 FKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLF 110
F++ +G + + +K+ KS K + +E L + N L
Sbjct: 182 FEEEGQQEGVIVNIDSEQIKELSKHAKSSSRKSLSKQDNTIGNEFGNLTERTDNSLNVLI 241
Query: 111 SKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTK 148
S + +F+P + + + + E ++ +EL G K
Sbjct: 242 SSIEMEEGALFVPHYYSKAIVILVVNEGEAHVELVGPK 279
>pdb|1BR0|A Chain A, Three Dimensional Structure Of The N-Terminal Domain Of
Syntaxin 1a
Length = 120
Score = 25.8 bits (55), Expect = 3.5
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Query: 47 MHDFFKQMHTNKGALDKVLRN---YMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIA 103
M +FF+Q+ +G +DK+ N + + A++ S D+ K E EL+ I
Sbjct: 4 MDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTK------EELEELMSDIK 57
Query: 104 ENPNFLFSK 112
+ N + SK
Sbjct: 58 KTANKVRSK 66
>pdb|1DT6|A Chain A, Structure Of Mammalian Cytochrome P450 2c5
Length = 473
Score = 25.4 bits (54), Expect = 4.6
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 12/80 (15%)
Query: 14 DSKDKKE-KLIESLQENELLSTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDY 72
D KD++ KL+ESL EN L ++ + + D+F +H +L+N DY
Sbjct: 170 DYKDEEFLKLMESLHENVELLGTPWLQVYNNFPALLDYFPGIHKT------LLKN--ADY 221
Query: 73 RAVIKSIGVDKFKKVYRLLE 92
IK+ ++K K+ +LL+
Sbjct: 222 ---IKNFIMEKVKEHQKLLD 238
>pdb|5REQ|A Chain A, Methylmalonyl-Coa Mutase, Y89f Mutant, Substrate Complex
pdb|5REQ|C Chain C, Methylmalonyl-Coa Mutase, Y89f Mutant, Substrate Complex
Length = 727
Score = 25.4 bits (54), Expect = 4.6
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 137 EMDSQIELYGTKLPLLKLFVMTDEEMNFYANLKTIEQYNDYVRDLLMK 184
+M + + G LP+L L+V+T EE ND +++ +++
Sbjct: 159 QMSVSMTMNGAVLPILALYVVTAEEQGVKPEQLAGTIQNDILKEFMVR 206
>pdb|1E1C|A Chain A, Methylmalonyl-Coa Mutase H244a Mutant
pdb|1E1C|C Chain C, Methylmalonyl-Coa Mutase H244a Mutant
Length = 727
Score = 25.4 bits (54), Expect = 4.6
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 137 EMDSQIELYGTKLPLLKLFVMTDEEMNFYANLKTIEQYNDYVRDLLMK 184
+M + + G LP+L L+V+T EE ND +++ +++
Sbjct: 159 QMSVSMTMNGAVLPILALYVVTAEEQGVKPEQLAGTIQNDILKEFMVR 206
>pdb|6REQ|A Chain A, Methylmalonyl-Coa Mutase, 3-Carboxypropyl-Coa Inhibitor
Complex
pdb|6REQ|C Chain C, Methylmalonyl-Coa Mutase, 3-Carboxypropyl-Coa Inhibitor
Complex
pdb|4REQ|A Chain A, Methylmalonyl-Coa Mutase Substrate Complex
pdb|4REQ|C Chain C, Methylmalonyl-Coa Mutase Substrate Complex
pdb|1REQ|A Chain A, Methylmalonyl-Coa Mutase
pdb|1REQ|C Chain C, Methylmalonyl-Coa Mutase
pdb|2REQ|A Chain A, Methylmalonyl-Coa Mutase, Non-Productive Coa Complex, In
Open Conformation Representing Substrate-Free State
pdb|2REQ|C Chain C, Methylmalonyl-Coa Mutase, Non-Productive Coa Complex, In
Open Conformation Representing Substrate-Free State
pdb|3REQ|A Chain A, Methylmalonyl-Coa Mutase, Substrate-Free State (Poor
Quality Structure)
pdb|7REQ|A Chain A, Methylmalonyl-Coa Mutase, 2-Carboxypropyl-Coa Inhibitor
Complex
pdb|7REQ|C Chain C, Methylmalonyl-Coa Mutase, 2-Carboxypropyl-Coa Inhibitor
Complex
Length = 727
Score = 25.4 bits (54), Expect = 4.6
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 137 EMDSQIELYGTKLPLLKLFVMTDEEMNFYANLKTIEQYNDYVRDLLMK 184
+M + + G LP+L L+V+T EE ND +++ +++
Sbjct: 159 QMSVSMTMNGAVLPILALYVVTAEEQGVKPEQLAGTIQNDILKEFMVR 206
>pdb|1HWT|C Chain C, Structure Of A Hap1DNA COMPLEX REVEALS DRAMATICALLY
Asymmetric Dna Binding By A Homodimeric Protein
pdb|1HWT|G Chain G, Structure Of A Hap1DNA COMPLEX REVEALS DRAMATICALLY
Asymmetric Dna Binding By A Homodimeric Protein
Length = 81
Score = 25.0 bits (53), Expect = 6.0
Identities = 9/30 (30%), Positives = 20/30 (66%)
Query: 28 ENELLSTDEKKKIIDQIKTMHDFFKQMHTN 57
E ELL +E KK+ +++K++ ++H++
Sbjct: 51 EKELLKDNELKKLRERVKSLEKTLSKVHSS 80
>pdb|2HAP|C Chain C, Structure Of A Hap1-18DNA COMPLEX REVEALS THAT
PROTEINDNA Interactions Can Have Direct Allosteric
Effects On Transcriptional Activation
Length = 81
Score = 25.0 bits (53), Expect = 6.0
Identities = 9/30 (30%), Positives = 20/30 (66%)
Query: 28 ENELLSTDEKKKIIDQIKTMHDFFKQMHTN 57
E ELL +E KK+ +++K++ ++H++
Sbjct: 51 EKELLKDNELKKLRERVKSLEKTLSKVHSS 80
>pdb|1I1E|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With Doxorubicin
pdb|1EPW|A Chain A, Crystal Structure Of Clostridium Neurotoxin Type B
pdb|1F31|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With A Trisaccharide
Length = 1290
Score = 25.0 bits (53), Expect = 6.0
Identities = 15/54 (27%), Positives = 27/54 (49%), Gaps = 4/54 (7%)
Query: 19 KEKLIESLQENELL----STDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNY 68
K+ L+ + EN+L + EK K+ +KT+ F ++TN L ++ Y
Sbjct: 802 KKNLLNYIDENKLYLIGSAEYEKSKVNKYLKTIMPFDLSIYTNDTILIEMFNKY 855
>pdb|1HWT|D Chain D, Structure Of A Hap1DNA COMPLEX REVEALS DRAMATICALLY
Asymmetric Dna Binding By A Homodimeric Protein
pdb|1HWT|H Chain H, Structure Of A Hap1DNA COMPLEX REVEALS DRAMATICALLY
Asymmetric Dna Binding By A Homodimeric Protein
Length = 81
Score = 25.0 bits (53), Expect = 6.0
Identities = 9/30 (30%), Positives = 20/30 (66%)
Query: 28 ENELLSTDEKKKIIDQIKTMHDFFKQMHTN 57
E ELL +E KK+ +++K++ ++H++
Sbjct: 51 EKELLKDNEVKKLRERVKSLEKTLSKVHSS 80
>pdb|2HAP|D Chain D, Structure Of A Hap1-18DNA COMPLEX REVEALS THAT
PROTEINDNA Interactions Can Have Direct Allosteric
Effects On Transcriptional Activation
Length = 81
Score = 25.0 bits (53), Expect = 6.0
Identities = 9/30 (30%), Positives = 20/30 (66%)
Query: 28 ENELLSTDEKKKIIDQIKTMHDFFKQMHTN 57
E ELL +E KK+ +++K++ ++H++
Sbjct: 51 EKELLKDNEVKKLRERVKSLEKTLSKVHSS 80
>pdb|1DEQ|A Chain A, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|D Chain D, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|N Chain N, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|Q Chain Q, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
Length = 390
Score = 25.0 bits (53), Expect = 6.0
Identities = 13/57 (22%), Positives = 31/57 (53%), Gaps = 2/57 (3%)
Query: 19 KEKLIESLQENELLSTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNY--MKDYR 73
+ K+IE +Q LL + + +++D + D ++ + KG+ + L + ++DY+
Sbjct: 126 RRKVIEQVQRINLLQKNVRDQLVDMKRLEVDIDIKIRSCKGSCSRALEHKVDLEDYK 182
>pdb|1YPP|A Chain A, Acid Anhydride Hydrolase
pdb|1YPP|B Chain B, Acid Anhydride Hydrolase
Length = 286
Score = 24.6 bits (52), Expect = 7.8
Identities = 15/46 (32%), Positives = 23/46 (49%), Gaps = 3/46 (6%)
Query: 21 KLIESLQENELLSTDE---KKKIIDQIKTMHDFFKQMHTNKGALDK 63
K+ + EN+ + E KK +D IK HD +KQ+ K + K
Sbjct: 193 KIPDGKPENQFAFSGEAKNKKYALDIIKETHDSWKQLIAGKSSDSK 238
>pdb|1G99|A Chain A, An Ancient Enzyme: Acetate Kinase From Methanosarcina
Thermophila
pdb|1G99|B Chain B, An Ancient Enzyme: Acetate Kinase From Methanosarcina
Thermophila
Length = 408
Score = 24.6 bits (52), Expect = 7.8
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 7 KLFSMIADSKDKKEKLIESLQENEL-LSTDEKKKIIDQIKTMHDF-------FKQMHTNK 58
K+ + A S K +LI+ E+ L + E+ I + I T F + T+K
Sbjct: 2 KVLVINAGSSSLKYQLIDMTNESALAVGLCERIGIDNSIITQKKFDGKKLEKLTDLPTHK 61
Query: 59 GALDKVLRNYMKDYRAVIKSIG 80
AL++V++ D VIK +G
Sbjct: 62 DALEEVVKALTDDEFGVIKDMG 83
>pdb|1HUK|A Chain A, Refined Structure Of Yeast Inorganic Pyrophosphatase And
Its K61r Mutant
pdb|1HUK|B Chain B, Refined Structure Of Yeast Inorganic Pyrophosphatase And
Its K61r Mutant
Length = 281
Score = 24.6 bits (52), Expect = 7.8
Identities = 15/46 (32%), Positives = 23/46 (49%), Gaps = 3/46 (6%)
Query: 21 KLIESLQENELLSTDE---KKKIIDQIKTMHDFFKQMHTNKGALDK 63
K+ + EN+ + E KK +D IK HD +KQ+ K + K
Sbjct: 193 KIPDGKPENQFAFSGEAKNKKYALDIIKETHDSWKQLIAGKSSDSK 238
>pdb|8PRK|B Chain B, The R78k And D117e Active Site Variants Of Saccharomyces
Cerevisiae Soluble Inorganic Pyrophosphatase: Structural
Studies And Mechanistic Implications
pdb|8PRK|A Chain A, The R78k And D117e Active Site Variants Of Saccharomyces
Cerevisiae Soluble Inorganic Pyrophosphatase: Structural
Studies And Mechanistic Implications
Length = 287
Score = 24.6 bits (52), Expect = 7.8
Identities = 15/46 (32%), Positives = 23/46 (49%), Gaps = 3/46 (6%)
Query: 21 KLIESLQENELLSTDE---KKKIIDQIKTMHDFFKQMHTNKGALDK 63
K+ + EN+ + E KK +D IK HD +KQ+ K + K
Sbjct: 194 KIPDGKPENQFAFSGEAKNKKYALDIIKETHDSWKQLIAGKSSDSK 239
>pdb|1HUJ|A Chain A, Refined Structure Of Yeast Inorganic Pyrophosphatase And
Its K61r Mutant
pdb|1HUJ|B Chain B, Refined Structure Of Yeast Inorganic Pyrophosphatase And
Its K61r Mutant
Length = 281
Score = 24.6 bits (52), Expect = 7.8
Identities = 15/46 (32%), Positives = 23/46 (49%), Gaps = 3/46 (6%)
Query: 21 KLIESLQENELLSTDE---KKKIIDQIKTMHDFFKQMHTNKGALDK 63
K+ + EN+ + E KK +D IK HD +KQ+ K + K
Sbjct: 193 KIPDGKPENQFAFSGEAKNKKYALDIIKETHDSWKQLIAGKSSDSK 238
>pdb|1WGJ|B Chain B, Structure Of Inorganic Pyrophosphatase
pdb|1E6A|A Chain A, Fluoride-Inhibited Substrate Complex Of Saccharomyces
Cerevisiae Inorganic Pyrophosphatase
pdb|1WGJ|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1E6A|B Chain B, Fluoride-Inhibited Substrate Complex Of Saccharomyces
Cerevisiae Inorganic Pyrophosphatase
pdb|1WGI|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1WGI|B Chain B, Structure Of Inorganic Pyrophosphatase
Length = 286
Score = 24.6 bits (52), Expect = 7.8
Identities = 15/46 (32%), Positives = 23/46 (49%), Gaps = 3/46 (6%)
Query: 21 KLIESLQENELLSTDE---KKKIIDQIKTMHDFFKQMHTNKGALDK 63
K+ + EN+ + E KK +D IK HD +KQ+ K + K
Sbjct: 193 KIPDGKPENQFAFSGEAKNKKYALDIIKETHDSWKQLIAGKSSDSK 238
>pdb|117E|A Chain A, The R78k And D117e Active Site Variants Of Saccharomyces
Cerevisiae Soluble Inorganic Pyrophosphatase: Structural
Studies And Mechanistic Implications
pdb|117E|B Chain B, The R78k And D117e Active Site Variants Of Saccharomyces
Cerevisiae Soluble Inorganic Pyrophosphatase: Structural
Studies And Mechanistic Implications
Length = 286
Score = 24.6 bits (52), Expect = 7.8
Identities = 15/46 (32%), Positives = 23/46 (49%), Gaps = 3/46 (6%)
Query: 21 KLIESLQENELLSTDE---KKKIIDQIKTMHDFFKQMHTNKGALDK 63
K+ + EN+ + E KK +D IK HD +KQ+ K + K
Sbjct: 193 KIPDGKPENQFAFSGEAKNKKYALDIIKETHDSWKQLIAGKSSDSK 238
>pdb|1E9G|B Chain B, Structure Of Inorganic Pyrophosphatase
Length = 286
Score = 24.6 bits (52), Expect = 7.8
Identities = 15/46 (32%), Positives = 23/46 (49%), Gaps = 3/46 (6%)
Query: 21 KLIESLQENELLSTDE---KKKIIDQIKTMHDFFKQMHTNKGALDK 63
K+ + EN+ + E KK +D IK HD +KQ+ K + K
Sbjct: 193 KIPDGKPENQFAFSGEAKNKKYALDIIKETHDSWKQLIAGKSSDSK 238
>pdb|1E9G|A Chain A, Structure Of Inorganic Pyrophosphatase
Length = 286
Score = 24.6 bits (52), Expect = 7.8
Identities = 15/46 (32%), Positives = 23/46 (49%), Gaps = 3/46 (6%)
Query: 21 KLIESLQENELLSTDE---KKKIIDQIKTMHDFFKQMHTNKGALDK 63
K+ + EN+ + E KK +D IK HD +KQ+ K + K
Sbjct: 193 KIPDGKPENQFAFSGEAKNKKYALDIIKETHDSWKQLIAGKSSDSK 238
>pdb|1F1M|A Chain A, Crystal Structure Of Outer Surface Protein C (Ospc)
pdb|1F1M|B Chain B, Crystal Structure Of Outer Surface Protein C (Ospc)
pdb|1F1M|C Chain C, Crystal Structure Of Outer Surface Protein C (Ospc)
pdb|1F1M|D Chain D, Crystal Structure Of Outer Surface Protein C (Ospc)
Length = 164
Score = 24.6 bits (52), Expect = 7.8
Identities = 11/41 (26%), Positives = 20/41 (47%)
Query: 17 DKKEKLIESLQENELLSTDEKKKIIDQIKTMHDFFKQMHTN 57
D +K I ++ DE +K+ + +K + K+M TN
Sbjct: 116 DNAKKAILKTNNDKTKGADELEKLFESVKNLSKAAKEMLTN 156
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.321 0.138 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,002,264
Number of Sequences: 13198
Number of extensions: 37625
Number of successful extensions: 122
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 111
Number of HSP's gapped (non-prelim): 27
length of query: 196
length of database: 2,899,336
effective HSP length: 83
effective length of query: 113
effective length of database: 1,803,902
effective search space: 203840926
effective search space used: 203840926
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)