BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645166|ref|NP_207336.1| cag pathogenicity island
protein (cag19) [Helicobacter pylori 26695]
(381 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UAG|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutam... 27 5.0
pdb|1EEH|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutam... 27 5.0
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyl... 27 5.0
pdb|1GX8|A Chain A, Bovine Beta-Lactoglobulin Complexed Wit... 26 6.6
pdb|1MFH|A Chain A, The Structure Of Bovine B-Lactoglobulin... 26 8.6
pdb|1BEB|A Chain A, Bovine Beta-Lactoglobulin, Lattice X >g... 26 8.6
pdb|1CJ5|A Chain A, Bovine Beta-Lactoglobulin A >gi|7245834... 26 8.6
>pdb|3UAG|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase
pdb|4UAG|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase
pdb|2UAG|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase
pdb|1UAG| Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase
Length = 437
Score = 26.6 bits (57), Expect = 5.0
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 216 ETWLKVAMQKATLIDYNSLTGQALFQSAIYAPALSFFSSM--GAPFGIIETFTLAP 269
ETWL+V +K + L+GQ + +A+ A AL+ + + + + TFT P
Sbjct: 245 ETWLRVKGEKVLNVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLP 300
>pdb|1EEH|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase
pdb|1E0D|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase
Length = 437
Score = 26.6 bits (57), Expect = 5.0
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 216 ETWLKVAMQKATLIDYNSLTGQALFQSAIYAPALSFFSSM--GAPFGIIETFTLAP 269
ETWL+V +K + L+GQ + +A+ A AL+ + + + + TFT P
Sbjct: 245 ETWLRVKGEKVLNVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLP 300
>pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 26.6 bits (57), Expect = 5.0
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 31 LKAIQADAQAKQKTAQAELKAIEAQSSAKEKAIQAQIEGELRTQLATMSAMLKGAN 86
LK ++ QA+ K + E K ++ SA + Q + GEL + +++ + GAN
Sbjct: 5 LKVKTSEEQAEAKRLEREQK-LKLYQSATQAVFQKRQAGELDESVLELTSQILGAN 59
>pdb|1GX8|A Chain A, Bovine Beta-Lactoglobulin Complexed With Retinol, Trigonal
Lattice Z
pdb|1GX9|A Chain A, Bovine Beta-Lactoglobulin Complexed With Retinoic Acid,
Trigonal Lattice Z
pdb|1GXA|A Chain A, Bovine Beta-Lactoglobulin Complexed With Retinol And
Palmitic Acid, Trigonal Lattice Z
pdb|1BSQ|A Chain A, Structural And Functional Consequences Of Point Mutations
Of Variants A And B Of Bovine Beta-Lactoglobulin
pdb|1B0O| Bovine Beta-Lactoglobulin Complexed With Palmitate, Lattice Z
pdb|1B8E|A Chain A, High Resolution Crystal Structure Of The Bovine Beta-
Lactoglobulin (Isoforms A And B) In Orthorombic Space
Group
Length = 162
Score = 26.2 bits (56), Expect = 6.6
Identities = 17/56 (30%), Positives = 28/56 (49%), Gaps = 5/56 (8%)
Query: 125 KMIVEKQKINTQTEIQNMQIALQKNNEIIKLKMNQQNALLEALKNSFEPSVTLKTQ 180
K+I EK KI +I + N+++ L + + LL ++NS EP +L Q
Sbjct: 70 KIIAEKTKIPAVFKIDALN-----ENKVLVLDTDYKKYLLFCMENSAEPEQSLACQ 120
>pdb|1MFH|A Chain A, The Structure Of Bovine B-Lactoglobulin A In Crystals
Grown At Very Low Ionic Strength.
pdb|1MFH|B Chain B, The Structure Of Bovine B-Lactoglobulin A In Crystals
Grown At Very Low Ionic Strength.
pdb|1MFH|C Chain C, The Structure Of Bovine B-Lactoglobulin A In Crystals
Grown At Very Low Ionic Strength.
pdb|1MFH|D Chain D, The Structure Of Bovine B-Lactoglobulin A In Crystals
Grown At Very Low Ionic Strength.
pdb|1BSO|A Chain A, 12-Bromododecanoic Acid Binds Inside The Calyx Of Bovine
Beta-Lactoglobulin
pdb|1BSY| Structural Basis Of The Tanford Transition Of Bovine
Beta-Lactoglobulin From Crystal Structures At Three Ph
Values; Ph 7.1
pdb|2BLG| Structural Basis Of The Tanford Transition Of Bovine
Beta-Lactoglobulin From Crystal Structures At Three Ph
Values; Ph 8.2
pdb|3BLG| Structural Basis Of The Tanford Transition Of Bovine
Beta-Lactoglobulin From Crystal Structures At Three Ph
Values; Ph 6.2
pdb|1QG5|A Chain A, High Resolution Crystal Structure Of The Bovine Beta-
Lactoglobulin (Isoform A)
Length = 162
Score = 25.8 bits (55), Expect = 8.6
Identities = 17/56 (30%), Positives = 28/56 (49%), Gaps = 5/56 (8%)
Query: 125 KMIVEKQKINTQTEIQNMQIALQKNNEIIKLKMNQQNALLEALKNSFEPSVTLKTQ 180
K+I EK KI +I + N+++ L + + LL ++NS EP +L Q
Sbjct: 70 KIIAEKTKIPAVFKIDALN-----ENKVLVLDTDYKKYLLFCMENSAEPEQSLVCQ 120
>pdb|1BEB|A Chain A, Bovine Beta-Lactoglobulin, Lattice X
pdb|1BEB|B Chain B, Bovine Beta-Lactoglobulin, Lattice X
Length = 162
Score = 25.8 bits (55), Expect = 8.6
Identities = 17/56 (30%), Positives = 28/56 (49%), Gaps = 5/56 (8%)
Query: 125 KMIVEKQKINTQTEIQNMQIALQKNNEIIKLKMNQQNALLEALKNSFEPSVTLKTQ 180
K+I EK KI +I + N+++ L + + LL ++NS EP +L Q
Sbjct: 70 KIIAEKTKIPAVFKIDALN-----ENKVLVLDTDYKKYLLFCMENSAEPEQSLVCQ 120
>pdb|1CJ5|A Chain A, Bovine Beta-Lactoglobulin A
pdb|1DV9|A Chain A, Structural Changes Accompanying Ph-Induced Dissociation Of
The B-Lactoglobulin Dimer
Length = 162
Score = 25.8 bits (55), Expect = 8.6
Identities = 17/56 (30%), Positives = 28/56 (49%), Gaps = 5/56 (8%)
Query: 125 KMIVEKQKINTQTEIQNMQIALQKNNEIIKLKMNQQNALLEALKNSFEPSVTLKTQ 180
K+I EK KI +I + N+++ L + + LL ++NS EP +L Q
Sbjct: 70 KIIAEKTKIPAVFKIDALN-----ENKVLVLDTDYKKYLLFCMENSAEPEQSLVCQ 120
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.315 0.130 0.347
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,800,501
Number of Sequences: 13198
Number of extensions: 66379
Number of successful extensions: 186
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 184
Number of HSP's gapped (non-prelim): 7
length of query: 381
length of database: 2,899,336
effective HSP length: 90
effective length of query: 291
effective length of database: 1,711,516
effective search space: 498051156
effective search space used: 498051156
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)