BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645168|ref|NP_207338.1| cag pathogenicity island
protein (cag21) [Helicobacter pylori 26695]
(142 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1IRU|N Chain N, Crystal Structure Of The Mammalian 20s ... 25 4.5
pdb|1KWH|A Chain A, Structure Analysis Algq2, A Macromolecu... 24 7.6
pdb|1VP3| Vaccinia Virus Protein Vp39 In Complex With S-A... 23 10.0
pdb|3MCT| Vaccinia Methyltransferase Vp39 Complexed With ... 23 10.0
pdb|1V39| Dc26 Mutant Of Vaccinia Virus Protein Vp39 In C... 23 10.0
pdb|1EQA| Vaccinia Methyltransferase Vp39 Mutant E233q Co... 23 10.0
pdb|1EAM|A Chain A, Vaccinia Methyltransferase Vp39 Mutant ... 23 10.0
pdb|1JTE|A Chain A, Crystal Structure Analysis Of Vp39 F180... 23 10.0
pdb|1JSZ|A Chain A, Crystal Structure Analysis Of N7,9-Dime... 23 10.0
>pdb|1IRU|N Chain N, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|2 Chain 2, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 219
Score = 24.6 bits (52), Expect = 4.5
Identities = 16/59 (27%), Positives = 26/59 (43%), Gaps = 15/59 (25%)
Query: 96 LGINAMWGIQNLLMSQMMGDYGP-------------NNPFMYGYAPTYSDSSFLPPILG 141
LG+ G+ ++ + M+G YG NN M G + Y+D +L +LG
Sbjct: 12 LGVKFEGGV--VIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLG 68
>pdb|1KWH|A Chain A, Structure Analysis Algq2, A
Macromolecule(Alginate)-Binding Periplasmic Protein Of
Sphingomonas Sp. A1
Length = 492
Score = 23.9 bits (50), Expect = 7.6
Identities = 16/73 (21%), Positives = 30/73 (40%), Gaps = 2/73 (2%)
Query: 59 PKETLEQKVAVLNDYNDK--NVNIKFDNISLGSFQPNDNLGINAMWGIQNLLMSQMMGDY 116
P + +++ VL + +K N N K D + P++ + WG ++ M Y
Sbjct: 153 PPQNIDELYTVLKAFKEKDPNGNGKADEVPFIDRHPDEVFRLVNFWGARSSGSDNYMDFY 212
Query: 117 GPNNPFMYGYAPT 129
N + +A T
Sbjct: 213 IDNGRVKHPWAET 225
>pdb|1VP3| Vaccinia Virus Protein Vp39 In Complex With S-Adenosylhomocysteine
Length = 348
Score = 23.5 bits (49), Expect = 10.0
Identities = 31/142 (21%), Positives = 58/142 (40%), Gaps = 25/142 (17%)
Query: 1 MKTNFYKIKLLFAWCLIIGMFNAPLNADQNTDIKDISPEDMALNSVGLVSR---DQLKIE 57
++ +FY + ++ W LI G + P+ L V LV+R ++
Sbjct: 93 LRDHFYNLGVIIKWMLIDGRHHDPIL--------------NGLRDVTLVTRFVDEEYLRS 138
Query: 58 IPKETLEQKVAVLNDYNDKNVNIKFDNISLGSFQPNDNLGINAMWGIQNLLM------SQ 111
I K+ K+ +++D K + L S N+ I+ + + + L Q
Sbjct: 139 IKKQLHPSKIILISDVRSKRGGNEPSTADLLSNYALQNVMISILNPVASSLKWRCPFPDQ 198
Query: 112 MMGD-YGPN-NPFMYGYAPTYS 131
+ D Y P+ N + +AP+YS
Sbjct: 199 WIKDFYIPHGNKMLQPFAPSYS 220
>pdb|3MCT| Vaccinia Methyltransferase Vp39 Complexed With M3cyt And
S-Adenosylhomocysteine
pdb|1B42| Vaccinia Methyltransferase Vp39 Complexed With M1ade And
S-Adenosylhomocysteine
Length = 297
Score = 23.5 bits (49), Expect = 10.0
Identities = 31/142 (21%), Positives = 58/142 (40%), Gaps = 25/142 (17%)
Query: 1 MKTNFYKIKLLFAWCLIIGMFNAPLNADQNTDIKDISPEDMALNSVGLVSR---DQLKIE 57
++ +FY + ++ W LI G + P+ L V LV+R ++
Sbjct: 78 LRDHFYNLGVIIKWMLIDGRHHDPIL--------------NGLRDVTLVTRFVDEEYLRS 123
Query: 58 IPKETLEQKVAVLNDYNDKNVNIKFDNISLGSFQPNDNLGINAMWGIQNLLM------SQ 111
I K+ K+ +++D K + L S N+ I+ + + + L Q
Sbjct: 124 IKKQLHPSKIILISDVRSKRGGNEPSTADLLSNYALQNVMISILNPVASSLKWRCPFPDQ 183
Query: 112 MMGD-YGPN-NPFMYGYAPTYS 131
+ D Y P+ N + +AP+YS
Sbjct: 184 WIKDFYIPHGNKMLQPFAPSYS 205
>pdb|1V39| Dc26 Mutant Of Vaccinia Virus Protein Vp39 In Complex With
S-Adenosylhomocysteine And M7g(5')pppg
pdb|2VP3| Dc26 Mutant Of Vaccinia Virus Protein Vp39 In Complex With
S-Adenosylhomocysteine And M7g(5')pppg
pdb|1VP9| Dc26 Mutant Of Vaccinia Virus Protein Vp39 In Complex With
S-Adenosylhomocysteine
pdb|1P39| Dc26 Mutant Of Vaccinia Virus Protein Vp39 In Complex With
S-Adenosylhomocysteine And M7g(5')pppg
Length = 322
Score = 23.5 bits (49), Expect = 10.0
Identities = 31/142 (21%), Positives = 58/142 (40%), Gaps = 25/142 (17%)
Query: 1 MKTNFYKIKLLFAWCLIIGMFNAPLNADQNTDIKDISPEDMALNSVGLVSR---DQLKIE 57
++ +FY + ++ W LI G + P+ L V LV+R ++
Sbjct: 93 LRDHFYNLGVIIKWMLIDGRHHDPIL--------------NGLRDVTLVTRFVDEEYLRS 138
Query: 58 IPKETLEQKVAVLNDYNDKNVNIKFDNISLGSFQPNDNLGINAMWGIQNLLM------SQ 111
I K+ K+ +++D K + L S N+ I+ + + + L Q
Sbjct: 139 IKKQLHPSKIILISDVRSKRGGNEPSTADLLSNYALQNVMISILNPVASSLKWRCPFPDQ 198
Query: 112 MMGD-YGPN-NPFMYGYAPTYS 131
+ D Y P+ N + +AP+YS
Sbjct: 199 WIKDFYIPHGNKMLQPFAPSYS 220
>pdb|1EQA| Vaccinia Methyltransferase Vp39 Mutant E233q Complexed With M7g
And S-Adenosylhomocysteine
Length = 297
Score = 23.5 bits (49), Expect = 10.0
Identities = 31/142 (21%), Positives = 58/142 (40%), Gaps = 25/142 (17%)
Query: 1 MKTNFYKIKLLFAWCLIIGMFNAPLNADQNTDIKDISPEDMALNSVGLVSR---DQLKIE 57
++ +FY + ++ W LI G + P+ L V LV+R ++
Sbjct: 78 LRDHFYNLGVIIKWMLIDGRHHDPIL--------------NGLRDVTLVTRFVDEEYLRS 123
Query: 58 IPKETLEQKVAVLNDYNDKNVNIKFDNISLGSFQPNDNLGINAMWGIQNLLM------SQ 111
I K+ K+ +++D K + L S N+ I+ + + + L Q
Sbjct: 124 IKKQLHPSKIILISDVRSKRGGNEPSTADLLSNYALQNVMISILNPVASSLKWRCPFPDQ 183
Query: 112 MMGD-YGPN-NPFMYGYAPTYS 131
+ D Y P+ N + +AP+YS
Sbjct: 184 WIKDFYIPHGNKMLQPFAPSYS 205
>pdb|1EAM|A Chain A, Vaccinia Methyltransferase Vp39 Mutant (Ec: 2.7.7.19)
Length = 307
Score = 23.5 bits (49), Expect = 10.0
Identities = 31/142 (21%), Positives = 58/142 (40%), Gaps = 25/142 (17%)
Query: 1 MKTNFYKIKLLFAWCLIIGMFNAPLNADQNTDIKDISPEDMALNSVGLVSR---DQLKIE 57
++ +FY + ++ W LI G + P+ L V LV+R ++
Sbjct: 78 LRDHFYNLGVIIKWMLIDGRHHDPIL--------------NGLRDVTLVTRFVDEEYLRS 123
Query: 58 IPKETLEQKVAVLNDYNDKNVNIKFDNISLGSFQPNDNLGINAMWGIQNLLM------SQ 111
I K+ K+ +++D K + L S N+ I+ + + + L Q
Sbjct: 124 IKKQLHPSKIILISDVRSKRGGNEPSTADLLSNYALQNVMISILNPVASSLKWRCPFPDQ 183
Query: 112 MMGD-YGPN-NPFMYGYAPTYS 131
+ D Y P+ N + +AP+YS
Sbjct: 184 WIKDFYIPHGNKMLQPFAPSYS 205
>pdb|1JTE|A Chain A, Crystal Structure Analysis Of Vp39 F180w Mutant
pdb|1JTF|A Chain A, Crystal Structure Analysis Of Vp39-F180w Mutant And
M7gpppg Complex
Length = 307
Score = 23.5 bits (49), Expect = 10.0
Identities = 31/142 (21%), Positives = 58/142 (40%), Gaps = 25/142 (17%)
Query: 1 MKTNFYKIKLLFAWCLIIGMFNAPLNADQNTDIKDISPEDMALNSVGLVSR---DQLKIE 57
++ +FY + ++ W LI G + P+ L V LV+R ++
Sbjct: 78 LRDHFYNLGVIIKWMLIDGRHHDPIL--------------NGLRDVTLVTRFVDEEYLRS 123
Query: 58 IPKETLEQKVAVLNDYNDKNVNIKFDNISLGSFQPNDNLGINAMWGIQNLLM------SQ 111
I K+ K+ +++D K + L S N+ I+ + + + L Q
Sbjct: 124 IKKQLHPSKIILISDVRSKRGGNEPSTADLLSNYALQNVMISILNPVASSLKWRCPWPDQ 183
Query: 112 MMGD-YGPN-NPFMYGYAPTYS 131
+ D Y P+ N + +AP+YS
Sbjct: 184 WIKDFYIPHGNKMLQPFAPSYS 205
>pdb|1JSZ|A Chain A, Crystal Structure Analysis Of N7,9-Dimethylguanine-Vp39
Complex
pdb|1BKY| Vaccinia Methyltransferase Vp39 Complexed With M1cyt And
S-Adenosylhomocysteine
Length = 307
Score = 23.5 bits (49), Expect = 10.0
Identities = 31/142 (21%), Positives = 58/142 (40%), Gaps = 25/142 (17%)
Query: 1 MKTNFYKIKLLFAWCLIIGMFNAPLNADQNTDIKDISPEDMALNSVGLVSR---DQLKIE 57
++ +FY + ++ W LI G + P+ L V LV+R ++
Sbjct: 78 LRDHFYNLGVIIKWMLIDGRHHDPIL--------------NGLRDVTLVTRFVDEEYLRS 123
Query: 58 IPKETLEQKVAVLNDYNDKNVNIKFDNISLGSFQPNDNLGINAMWGIQNLLM------SQ 111
I K+ K+ +++D K + L S N+ I+ + + + L Q
Sbjct: 124 IKKQLHPSKIILISDVRSKRGGNEPSTADLLSNYALQNVMISILNPVASSLKWRCPFPDQ 183
Query: 112 MMGD-YGPN-NPFMYGYAPTYS 131
+ D Y P+ N + +AP+YS
Sbjct: 184 WIKDFYIPHGNKMLQPFAPSYS 205
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.138 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 881,357
Number of Sequences: 13198
Number of extensions: 35154
Number of successful extensions: 73
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 73
Number of HSP's gapped (non-prelim): 9
length of query: 142
length of database: 2,899,336
effective HSP length: 79
effective length of query: 63
effective length of database: 1,856,694
effective search space: 116971722
effective search space used: 116971722
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)