BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645169|ref|NP_207339.1| cag pathogenicity island
protein (cag22) [Helicobacter pylori 26695]
(268 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1EWT|A Chain A, Crystal Structure Of Metabotropic Gluta... 30 0.38
pdb|1EJ6|A Chain A, Reovirus Core 28 1.4
pdb|1C3C|A Chain A, T. Maritima Adenylosuccinate Lyase >gi|... 28 1.4
pdb|1C3U|A Chain A, T. Maritima Adenylosuccinate Lyase >gi|... 28 1.4
pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyos... 27 3.2
pdb|1BR1|A Chain A, Smooth Muscle Myosin Motor Domain-Essen... 27 3.2
pdb|2CSN| Binary Complex Of Casein Kinase-1 With Cki7 27 3.2
pdb|1CSN| Binary Complex Of Casein Kinase-1 With Mgatp >g... 27 3.2
pdb|1BR2|A Chain A, Smooth Muscle Myosin Motor Domain Compl... 27 3.2
pdb|1DLJ|A Chain A, The First Structure Of Udp-Glucose Dehy... 26 5.4
pdb|1IG3|A Chain A, Mouse Thiamin Pyrophosphokinase Complex... 26 5.4
pdb|1DLI|A Chain A, The First Structure Of Udp-Glucose Dehy... 26 5.4
pdb|1FIO|A Chain A, Crystal Structure Of Yeast T-Snare Prot... 26 5.4
pdb|1A0R|G Chain G, Heterotrimeric Complex Of PhosducinTRAN... 25 7.1
pdb|1GOT|G Chain G, Heterotrimeric Complex Of A Gt-AlphaGI-... 25 7.1
pdb|2TRC|G Chain G, PhosducinTRANSDUCIN BETA-Gamma Complex ... 25 7.1
pdb|1TBG|G Chain G, Beta-Gamma Dimer Of The Heterotrimeric ... 25 7.1
pdb|1EQJ|A Chain A, Crystal Structure Of Phosphoglycerate M... 25 9.3
pdb|2BPA|1 Chain 1, Bacteriophage Phix174 Capsid Proteins G... 25 9.3
pdb|1KVP| Structural Analysis Of The Spiroplasma Virus, S... 25 9.3
pdb|1CD3|F Chain F, Procapsid Of Bacteriophage Phix174 25 9.3
pdb|1B5F|A Chain A, Native Cardosin A From Cynara Carduncul... 25 9.3
>pdb|1EWT|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form I
pdb|1EWT|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form I
pdb|1EWK|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate
pdb|1EWK|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate
pdb|1EWV|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form Ii
pdb|1EWV|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form Ii
pdb|1ISR|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate And Gadolinium Ion
pdb|1ISS|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With An Antagonist
pdb|1ISS|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With An Antagonist
Length = 490
Score = 29.6 bits (65), Expect = 0.38
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 65 HVNVFYENVLNIDDVKTEHLYSGLIDS 91
HV ++E VLNIDD K + SG++ S
Sbjct: 464 HVGTWHEGVLNIDDYKIQMNKSGMVRS 490
>pdb|1EJ6|A Chain A, Reovirus Core
Length = 1289
Score = 27.7 bits (60), Expect = 1.4
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 38 FIEEEMEGEITEQNLTALYDFSNFLEDHVNVFYENVL 74
F+ E++ + + + +Y SN+ +HVNVF N L
Sbjct: 85 FMREKLR--VLKYEVLRIYPISNYSNEHVNVFVANAL 119
>pdb|1C3C|A Chain A, T. Maritima Adenylosuccinate Lyase
pdb|1C3C|B Chain B, T. Maritima Adenylosuccinate Lyase
Length = 429
Score = 27.7 bits (60), Expect = 1.4
Identities = 18/71 (25%), Positives = 40/71 (55%), Gaps = 6/71 (8%)
Query: 1 MKQSLREQKLLKILENDVLTILDSFSNYLFELREELDFIEEEMEGEITEQNLTALYDFSN 60
+++ L ++ I++ + L +S ++L L E+ EE++ +T++ L L+D S
Sbjct: 361 IEKGLTRKEAYDIVQRNALKTWNSEKHFLEYLLED-----EEVKKLVTKEELEELFDISY 415
Query: 61 FLEDHVNVFYE 71
+L+ HV+ +E
Sbjct: 416 YLK-HVDHIFE 425
>pdb|1C3U|A Chain A, T. Maritima Adenylosuccinate Lyase
pdb|1C3U|B Chain B, T. Maritima Adenylosuccinate Lyase
Length = 431
Score = 27.7 bits (60), Expect = 1.4
Identities = 18/71 (25%), Positives = 40/71 (55%), Gaps = 6/71 (8%)
Query: 1 MKQSLREQKLLKILENDVLTILDSFSNYLFELREELDFIEEEMEGEITEQNLTALYDFSN 60
+++ L ++ I++ + L +S ++L L E+ EE++ +T++ L L+D S
Sbjct: 362 IEKGLTRKEAYDIVQRNALKTWNSEKHFLEYLLED-----EEVKKLVTKEELEELFDISY 416
Query: 61 FLEDHVNVFYE 71
+L+ HV+ +E
Sbjct: 417 YLK-HVDHIFE 426
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 26.6 bits (57), Expect = 3.2
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 230 QTDMSVEAKKKELFEKYFQNIDEVTNKMLDQ-KNQNXS 266
Q D ++EA K FE+ F+ I NK LD+ K Q S
Sbjct: 421 QADFAIEALAKAKFERLFRWILTRVNKALDKTKRQGAS 458
>pdb|1BR1|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR4|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
Length = 820
Score = 26.6 bits (57), Expect = 3.2
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 230 QTDMSVEAKKKELFEKYFQNIDEVTNKMLDQ-KNQNXS 266
Q D ++EA K FE+ F+ I NK LD+ K Q S
Sbjct: 421 QADFAIEALAKAKFERLFRWILTRVNKALDKTKRQGAS 458
>pdb|2CSN| Binary Complex Of Casein Kinase-1 With Cki7
Length = 297
Score = 26.6 bits (57), Expect = 3.2
Identities = 34/177 (19%), Positives = 68/177 (38%), Gaps = 30/177 (16%)
Query: 66 VNVFYENVLNIDDVKTEHLYSGLIDSLNANLHFVKSF---------LSNQDLDFRFFKEI 116
V +E L D+K ++ G +S NAN+ +V F ++ Q + +R K +
Sbjct: 118 VQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNL 177
Query: 117 NDGQDPQKTLSRLIPLQSGKNDASSFKANNSFVSLVYVYVYFM--------LETIMQSYR 168
+ + L QS ++D +L +V++YF+ L+ +
Sbjct: 178 SGTARYMSINTHLGREQSRRDDLE---------ALGHVFMYFLRGSLPWQGLKAATNKQK 228
Query: 169 ILRLLEKPINNNISEDMQNDIENFFVQANFLEYYVQNKIYPTNHAYDFTHLIMDSII 225
R+ EK + + E E F+ +Y +N + YD+ + ++
Sbjct: 229 YERIGEKKQSTPLRELCAGFPEEFYKYM----HYARNLAFDATPDYDYLQGLFSKVL 281
>pdb|1CSN| Binary Complex Of Casein Kinase-1 With Mgatp
pdb|1EH4|A Chain A, Binary Complex Of Casein Kinase-1 From S. Pombe With An
Atp Competitive Inhibitor, Ic261
pdb|1EH4|B Chain B, Binary Complex Of Casein Kinase-1 From S. Pombe With An
Atp Competitive Inhibitor, Ic261
Length = 298
Score = 26.6 bits (57), Expect = 3.2
Identities = 34/177 (19%), Positives = 68/177 (38%), Gaps = 30/177 (16%)
Query: 66 VNVFYENVLNIDDVKTEHLYSGLIDSLNANLHFVKSF---------LSNQDLDFRFFKEI 116
V +E L D+K ++ G +S NAN+ +V F ++ Q + +R K +
Sbjct: 119 VQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNL 178
Query: 117 NDGQDPQKTLSRLIPLQSGKNDASSFKANNSFVSLVYVYVYFM--------LETIMQSYR 168
+ + L QS ++D +L +V++YF+ L+ +
Sbjct: 179 SGTARYMSINTHLGREQSRRDDLE---------ALGHVFMYFLRGSLPWQGLKAATNKQK 229
Query: 169 ILRLLEKPINNNISEDMQNDIENFFVQANFLEYYVQNKIYPTNHAYDFTHLIMDSII 225
R+ EK + + E E F+ +Y +N + YD+ + ++
Sbjct: 230 YERIGEKKQSTPLRELCAGFPEEFYKYM----HYARNLAFDATPDYDYLQGLFSKVL 282
>pdb|1BR2|A Chain A, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|B Chain B, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|C Chain C, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|D Chain D, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|E Chain E, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|F Chain F, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
Length = 791
Score = 26.6 bits (57), Expect = 3.2
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 230 QTDMSVEAKKKELFEKYFQNIDEVTNKMLDQ-KNQNXS 266
Q D ++EA K FE+ F+ I NK LD+ K Q S
Sbjct: 421 QADFAIEALAKAKFERLFRWILTRVNKALDKTKRQGAS 458
>pdb|1DLJ|A Chain A, The First Structure Of Udp-Glucose Dehydrogenase (Udpgdh)
Reveals The Catalytic Residues Necessary For The
Two-Fold Oxidation
Length = 402
Score = 25.8 bits (55), Expect = 5.4
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 12/58 (20%)
Query: 163 IMQSYRILRLLEKPINNNISEDMQ----NDIENFFVQANFLE--------YYVQNKIY 208
I++S I ++ +P+ N + + Q ND+ENF QAN + V+NK+Y
Sbjct: 337 ILKSKDIKIIIYEPMLNKLESEDQSVLVNDLENFKKQANIIVTNRYDNELQDVKNKVY 394
>pdb|1IG3|A Chain A, Mouse Thiamin Pyrophosphokinase Complexed With Thiamin
pdb|1IG3|B Chain B, Mouse Thiamin Pyrophosphokinase Complexed With Thiamin
Length = 263
Score = 25.8 bits (55), Expect = 5.4
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 211 NHAYDFTHLIMDSIIPNWIQTDM-SVEAKKKELFEK 245
NH YD T +S +P ++ D S+ + KE + K
Sbjct: 70 NHLYDLTEGERESFLPEFVSGDFDSIRPEVKEYYTK 105
>pdb|1DLI|A Chain A, The First Structure Of Udp-Glucose Dehydrogenase (Udpgdh)
Reveals The Catalytic Residues Necessary For The
Two-Fold Oxidation
Length = 402
Score = 25.8 bits (55), Expect = 5.4
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 12/58 (20%)
Query: 163 IMQSYRILRLLEKPINNNISEDMQ----NDIENFFVQANFLE--------YYVQNKIY 208
I++S I ++ +P+ N + + Q ND+ENF QAN + V+NK+Y
Sbjct: 337 ILKSKDIKIIIYEPMLNKLESEDQSVLVNDLENFKKQANIIVTNRYDNELQDVKNKVY 394
>pdb|1FIO|A Chain A, Crystal Structure Of Yeast T-Snare Protein Sso1
Length = 196
Score = 25.8 bits (55), Expect = 5.4
Identities = 12/46 (26%), Positives = 26/46 (56%)
Query: 162 TIMQSYRILRLLEKPINNNISEDMQNDIENFFVQANFLEYYVQNKI 207
TI Q + + L +N + +++ ++NF QA L++ ++N+I
Sbjct: 24 TINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEI 69
>pdb|1A0R|G Chain G, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 65
Score = 25.4 bits (54), Expect = 7.1
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 73 VLNIDDVKTEHLYSGLIDSLNANLHFVKSFLSNQDLDFRFFKEINDGQDP 122
V+NI+D+ + +D L + + +S +FR + E G+DP
Sbjct: 2 VINIEDLTEKDKLKMEVDQLKKEVTLERMLVSKCCEEFRDYVEERSGEDP 51
>pdb|1GOT|G Chain G, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
Length = 73
Score = 25.4 bits (54), Expect = 7.1
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 73 VLNIDDVKTEHLYSGLIDSLNANLHFVKSFLSNQDLDFRFFKEINDGQDP 122
V+NI+D+ + +D L + + +S +FR + E G+DP
Sbjct: 10 VINIEDLTEKDKLKMEVDQLKKEVTLERMLVSKCCEEFRDYVEERSGEDP 59
>pdb|2TRC|G Chain G, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|B Chain B, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|B Chain B, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 68
Score = 25.4 bits (54), Expect = 7.1
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 73 VLNIDDVKTEHLYSGLIDSLNANLHFVKSFLSNQDLDFRFFKEINDGQDP 122
V+NI+D+ + +D L + + +S +FR + E G+DP
Sbjct: 3 VINIEDLTEKDKLKMEVDQLKKEVTLERMLVSKCCEEFRDYVEERSGEDP 52
>pdb|1TBG|G Chain G, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|F Chain F, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|H Chain H, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|E Chain E, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
Length = 68
Score = 25.4 bits (54), Expect = 7.1
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 73 VLNIDDVKTEHLYSGLIDSLNANLHFVKSFLSNQDLDFRFFKEINDGQDP 122
V+NI+D+ + +D L + + +S +FR + E G+DP
Sbjct: 3 VINIEDLTEKDKLKMEVDQLKKEVTLERMLVSKCCEEFRDYVEERSGEDP 52
>pdb|1EQJ|A Chain A, Crystal Structure Of Phosphoglycerate Mutase From Bacillus
Stearothermophilus Complexed With 2-Phosphoglycerate
pdb|1EJJ|A Chain A, Crystal Structural Analysis Of Phosphoglycerate Mutase
Cocrystallized With 3-Phosphoglycerate
Length = 511
Score = 25.0 bits (53), Expect = 9.3
Identities = 17/59 (28%), Positives = 27/59 (44%), Gaps = 8/59 (13%)
Query: 209 PTNHAYDFTHLIM--------DSIIPNWIQTDMSVEAKKKELFEKYFQNIDEVTNKMLD 259
P AY+ T ++ D+II N+ DM + K E K + +DE K++D
Sbjct: 372 PEMSAYEVTDALLKEIEADKYDAIILNYANPDMVGHSGKLEPTIKAVEAVDECLGKVVD 430
>pdb|2BPA|1 Chain 1, Bacteriophage Phix174 Capsid Proteins Gpf, Gpg, Gpj And
Four Nucleotides
pdb|1AL0|F Chain F, Procapsid Of Bacteriophage Phix174
Length = 426
Score = 25.0 bits (53), Expect = 9.3
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 9 KLLKILENDVLTILDSFSNYLFELREELDFIEEEMEGEITEQNLTALYDF 58
K KI E S+ + + L E FI+E G++ E+ L +D+
Sbjct: 341 KKFKIAEGQWYRYAPSYVSPAYHLLEGFPFIQEPPSGDLQERVLIRHHDY 390
>pdb|1KVP| Structural Analysis Of The Spiroplasma Virus, Spv4, Implications
For Evolutionary Variation To Obtain Host Diversity
Among The Microviridae, Electron Microscopy, Alpha
Carbons Only
Length = 497
Score = 25.0 bits (53), Expect = 9.3
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 9 KLLKILENDVLTILDSFSNYLFELREELDFIEEEMEGEITEQNLTALYDF 58
K KI E S+ + + L E FI+E G++ E+ L +D+
Sbjct: 412 KKFKIAEGQWYRYAPSYVSPAYHLLEGFPFIQEPPSGDLQERVLIRHHDY 461
>pdb|1CD3|F Chain F, Procapsid Of Bacteriophage Phix174
Length = 426
Score = 25.0 bits (53), Expect = 9.3
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 9 KLLKILENDVLTILDSFSNYLFELREELDFIEEEMEGEITEQNLTALYDF 58
K KI E S+ + + L E FI+E G++ E+ L +D+
Sbjct: 341 KKFKIAEGQWYRYAPSYVSPAYHLLEGFPFIQEPPSGDLQERVLIRHHDY 390
>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|C Chain C, Native Cardosin A From Cynara Cardunculus L
Length = 239
Score = 25.0 bits (53), Expect = 9.3
Identities = 19/68 (27%), Positives = 31/68 (44%), Gaps = 21/68 (30%)
Query: 107 DLDFRFFKEINDGQDPQK------TLSRLIPLQSGK---------------NDASSFKAN 145
D D +F EI G PQK T S ++ + S K +D+S++K N
Sbjct: 10 DRDTSYFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCINSKACRAHSMYESSDSSTYKEN 69
Query: 146 NSFVSLVY 153
+F +++Y
Sbjct: 70 GTFGAIIY 77
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.318 0.136 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,434,882
Number of Sequences: 13198
Number of extensions: 58301
Number of successful extensions: 156
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 143
Number of HSP's gapped (non-prelim): 22
length of query: 268
length of database: 2,899,336
effective HSP length: 87
effective length of query: 181
effective length of database: 1,751,110
effective search space: 316950910
effective search space used: 316950910
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)