BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645171|ref|NP_207341.1| cag pathogenicity island
protein (cag24) [Helicobacter pylori 26695]
(207 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph O... 33 0.031
pdb|1MH1| Small G-Protein 33 0.031
pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyr... 33 0.031
pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex Wi... 31 0.12
pdb|1HE1|C Chain C, Crystal Structure Of The Complex Betwee... 31 0.12
pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmpp... 31 0.12
pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX 31 0.12
pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp ... 31 0.12
pdb|1B02|A Chain A, Crystal Structure Of Thymidylate Syntha... 28 1.00
pdb|1BKP|B Chain B, Thermostable Thymidylate Synthase A Fro... 28 1.00
pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex 27 1.7
pdb|1JXL|A Chain A, Crystal Structure Of A Y-Family Dna Pol... 26 2.9
pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2 >gi|77... 26 3.8
pdb|1KSO|A Chain A, Crystal Structure Of Apo S100a3 >gi|222... 26 3.8
pdb|1IYJ|B Chain B, Structure Of A Brca2-Dss1 Complex >gi|2... 26 3.8
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 32.7 bits (73), Expect = 0.031
Identities = 24/59 (40%), Positives = 31/59 (51%), Gaps = 3/59 (5%)
Query: 19 LSLVVFSSYGLANDDKEAKK---EVLEKEKNTPNGLVYTNLDFDSFKATIKNLKDKKVT 74
+SL+ FS A+ + K EV NTP LV T LD K TI+ LK+KK+T
Sbjct: 77 VSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 135
>pdb|1MH1| Small G-Protein
Length = 186
Score = 32.7 bits (73), Expect = 0.031
Identities = 24/59 (40%), Positives = 31/59 (51%), Gaps = 3/59 (5%)
Query: 19 LSLVVFSSYGLANDDKEAKK---EVLEKEKNTPNGLVYTNLDFDSFKATIKNLKDKKVT 74
+SL+ FS A+ + K EV NTP LV T LD K TI+ LK+KK+T
Sbjct: 79 VSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 137
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 32.7 bits (73), Expect = 0.031
Identities = 24/59 (40%), Positives = 31/59 (51%), Gaps = 3/59 (5%)
Query: 19 LSLVVFSSYGLANDDKEAKK---EVLEKEKNTPNGLVYTNLDFDSFKATIKNLKDKKVT 74
+SL+ FS A+ + K EV NTP LV T LD K TI+ LK+KK+T
Sbjct: 77 VSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 135
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
Length = 177
Score = 30.8 bits (68), Expect = 0.12
Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 21 LVVFSSYGLANDDKEAKK---EVLEKEKNTPNGLVYTNLDFDSFKATIKNLKDKKVT 74
L+ FS A+ + K EV NTP LV T LD K TI+ LK+KK+T
Sbjct: 79 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 135
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 30.8 bits (68), Expect = 0.12
Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 21 LVVFSSYGLANDDKEAKK---EVLEKEKNTPNGLVYTNLDFDSFKATIKNLKDKKVT 74
L+ FS A+ + K EV NTP LV T LD K TI+ LK+KK+T
Sbjct: 79 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 135
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
Length = 192
Score = 30.8 bits (68), Expect = 0.12
Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 21 LVVFSSYGLANDDKEAKK---EVLEKEKNTPNGLVYTNLDFDSFKATIKNLKDKKVT 74
L+ FS A+ + K EV NTP LV T LD K TI+ LK+KK+T
Sbjct: 79 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 135
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 30.8 bits (68), Expect = 0.12
Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 21 LVVFSSYGLANDDKEAKK---EVLEKEKNTPNGLVYTNLDFDSFKATIKNLKDKKVT 74
L+ FS A+ + K EV NTP LV T LD K TI+ LK+KK+T
Sbjct: 79 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 135
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 30.8 bits (68), Expect = 0.12
Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 21 LVVFSSYGLANDDKEAKK---EVLEKEKNTPNGLVYTNLDFDSFKATIKNLKDKKVT 74
L+ FS A+ + K EV NTP LV T LD K TI+ LK+KK+T
Sbjct: 79 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 135
>pdb|1B02|A Chain A, Crystal Structure Of Thymidylate Synthase A From Bacillus
Subtilis
Length = 279
Score = 27.7 bits (60), Expect = 1.00
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 100 IKDLKHYDPVIEKIFDEKGKEMGLNVELQINPEVKDFFTF 139
I D Y I+ + + +E EL INPEVKDF+ F
Sbjct: 218 IGDCHVYTRHIDNLKIQMEREQFEAPELWINPEVKDFYDF 257
>pdb|1BKP|B Chain B, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BSP|B Chain B, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BKP|A Chain A, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BSF|A Chain A, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BSF|B Chain B, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BKO|A Chain A, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BKO|B Chain B, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BKO|C Chain C, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BKO|D Chain D, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BSP|A Chain A, Thermostable Thymidylate Synthase A From Bacillus Subtilis
Length = 278
Score = 27.7 bits (60), Expect = 1.00
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 100 IKDLKHYDPVIEKIFDEKGKEMGLNVELQINPEVKDFFTF 139
I D Y I+ + + +E EL INPEVKDF+ F
Sbjct: 217 IGDCHVYTRHIDNLKIQMEREQFEAPELWINPEVKDFYDF 256
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 26.9 bits (58), Expect = 1.7
Identities = 21/56 (37%), Positives = 28/56 (49%), Gaps = 3/56 (5%)
Query: 21 LVVFSSYGLANDDKEAKK---EVLEKEKNTPNGLVYTNLDFDSFKATIKNLKDKKV 73
L+ FS A+ + K EV +TP LV T LD K TI+ LK+KK+
Sbjct: 79 LICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKKL 134
>pdb|1JXL|A Chain A, Crystal Structure Of A Y-Family Dna Polymerase In A
Ternary Complex With Dna Substrates And An Incoming
Nucleotide
Length = 352
Score = 26.2 bits (56), Expect = 2.9
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 18/91 (19%)
Query: 35 EAKKEVLEKEKNTPNGLVYTNLDFDSFKATIKNLKDKKVTFKEVNPDIIKDEVFDFVIVN 94
E K ++LEKEK T T+ K+K F ++ D+ K +
Sbjct: 127 EIKNKILEKEKIT---------------VTVGISKNK--VFAKIAADMAKPNGIKVIDDE 169
Query: 95 RVLKKIKDLKHYD-PVIEKIFDEKGKEMGLN 124
V + I++L D P I I EK K++G+N
Sbjct: 170 EVKRLIRELDIADVPGIGNITAEKLKKLGIN 200
>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2
pdb|1CJY|B Chain B, Human Cytosolic Phospholipase A2
Length = 749
Score = 25.8 bits (55), Expect = 3.8
Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 19/123 (15%)
Query: 37 KKEVLEKEKNTPNGLVYTNLDFDSFKATIKNLKDKKVTFKEVNP-DIIKD-----EVFDF 90
K +EK+ T V N++F +KA + + KE+ DI D F+F
Sbjct: 626 KNPDMEKDCPTIIHFVLANINFRKYKAP--GVPRETEEEKEIADFDIFDDPESPFSTFNF 683
Query: 91 VIVNRVLKKIKDLKHY----------DPVIEKIFDEKGKEMGLNVELQINPEVKDFFTFK 140
N+ K++ DL H+ + ++E I + +V L N E + FF +
Sbjct: 684 QYPNQAFKRLHDLMHFNTLNNIDVIKEAMVESIEYRRQNPSRCSVSLS-NVEARRFFNKE 742
Query: 141 SIS 143
+S
Sbjct: 743 FLS 745
>pdb|1KSO|A Chain A, Crystal Structure Of Apo S100a3
pdb|1KSO|B Chain B, Crystal Structure Of Apo S100a3
Length = 101
Score = 25.8 bits (55), Expect = 3.8
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 38 KEVLEKEKNTPNGLVYTNLDFDSFKATIKNLKDKKVTFKE 77
KE+L+KE T + D++ F + + KD +V F E
Sbjct: 35 KELLQKELATWTPTEFRECDYNKFMSVLDTNKDCEVDFVE 74
>pdb|1IYJ|B Chain B, Structure Of A Brca2-Dss1 Complex
pdb|1IYJ|D Chain D, Structure Of A Brca2-Dss1 Complex
Length = 817
Score = 25.8 bits (55), Expect = 3.8
Identities = 15/64 (23%), Positives = 26/64 (40%)
Query: 16 KVLLSLVVFSSYGLANDDKEAKKEVLEKEKNTPNGLVYTNLDFDSFKATIKNLKDKKVTF 75
+VLL L + N + A K++LE++ LV D S + K +
Sbjct: 247 RVLLQLKYRYDVEIDNSSRSALKKILERDDTAAKTLVLCVSDIISLSTNVSETSGSKASS 306
Query: 76 KEVN 79
++ N
Sbjct: 307 EDSN 310
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.139 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,173,868
Number of Sequences: 13198
Number of extensions: 48201
Number of successful extensions: 168
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 155
Number of HSP's gapped (non-prelim): 15
length of query: 207
length of database: 2,899,336
effective HSP length: 84
effective length of query: 123
effective length of database: 1,790,704
effective search space: 220256592
effective search space used: 220256592
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)