BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644686|ref|NP_206856.1| proline permease (putP)
[Helicobacter pylori 26695]
         (496 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1KUG|A  Chain A, Crystal Structure Of A Taiwan Habu Veno...    26  9.0
pdb|1KUF|A  Chain A, High-Resolution Crystal Structure Of A ...    26  9.0

>pdb|1KUG|A Chain A, Crystal Structure Of A Taiwan Habu Venom Metalloproteinase
           Complexed With Its Endogenous Inhibitor Penw
          Length = 203

 Score = 26.2 bits (56), Expect = 9.0
 Identities = 14/42 (33%), Positives = 24/42 (56%), Gaps = 3/42 (7%)

Query: 331 SAILAAVMSTASSQLLVSSSTIAEDFYATIFNKDAPQKLVMA 372
           + I++AV+S   S+L    S  ++D+Y T    D PQ ++ A
Sbjct: 164 TCIMSAVISDKQSKLF---SDCSKDYYQTFLTNDNPQCILNA 202



>pdb|1KUF|A Chain A, High-Resolution Crystal Structure Of A Snake Venom
           Metalloproteinase From Taiwan Habu
 pdb|1KUI|A Chain A, Crystal Structure Of A Taiwan Habu Venom Metalloproteinase
           Complexed With Peqw.
 pdb|1KUK|A Chain A, Crystal Structure Of A Taiwan Habu Venom Metalloproteinase
           Complexed With Pekw
          Length = 203

 Score = 26.2 bits (56), Expect = 9.0
 Identities = 14/42 (33%), Positives = 24/42 (56%), Gaps = 3/42 (7%)

Query: 331 SAILAAVMSTASSQLLVSSSTIAEDFYATIFNKDAPQKLVMA 372
           + I++AV+S   S+L    S  ++D+Y T    D PQ ++ A
Sbjct: 164 TCIMSAVISDKQSKLF---SDCSKDYYQTFLTNDNPQCILNA 202



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.328    0.142    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,481,403
Number of Sequences: 13198
Number of extensions: 93117
Number of successful extensions: 241
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 241
Number of HSP's gapped (non-prelim): 2
length of query: 496
length of database: 2,899,336
effective HSP length: 92
effective length of query: 404
effective length of database: 1,685,120
effective search space: 680788480
effective search space used: 680788480
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (26.2 bits)