BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645172|ref|NP_207342.1| cag pathogenicity island
protein (cag25) [Helicobacter pylori 26695]
(115 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1NCL| Thermal Stability Of Hexameric And Tetrameric N... 29 0.11
pdb|1H7E|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Man... 24 3.7
pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated E... 24 4.8
>pdb|1NCL| Thermal Stability Of Hexameric And Tetrameric Nucleoside,
Diphosphate Kinases
Length = 150
Score = 29.3 bits (64), Expect = 0.11
Identities = 21/78 (26%), Positives = 39/78 (49%), Gaps = 5/78 (6%)
Query: 19 GLV--VTTNPLMAVTSPAEGVTETKTLVIQIISVLAIVGGCALGVKGI---ADIWKISDD 73
GLV +T+ P++A+ +GV + L+I + + LA GG G G+ +I SD
Sbjct: 62 GLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAGGSIRGDFGVDVGRNIIHGSDS 121
Query: 74 IKRGQATVFAYAQPIAML 91
++ + + +P +L
Sbjct: 122 VESANREIALWFKPEELL 139
>pdb|1H7E|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Apo-Enzyme
pdb|1H7F|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Cmp Complex
pdb|1H7G|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Ctp Mg2+ Complex
pdb|1H7H|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Cdp Complex
pdb|1H7T|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Here Complex With Cmp-Neuac,
Cmp-Neuac Complex
pdb|1GQC|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase Complexed With Cmp-Kdo At 100k
pdb|1H7E|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Apo-Enzyme
pdb|1H7F|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Cmp Complex
pdb|1H7G|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Ctp Mg2+ Complex
pdb|1H7H|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Cdp Complex
pdb|1H7T|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Here Complex With Cmp-Neuac,
Cmp-Neuac Complex
pdb|1GQC|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase Complexed With Cmp-Kdo At 100k
pdb|1GQ9|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase Complexed With Ctp At 100k
pdb|1GQ9|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase Complexed With Ctp At 100k
pdb|1H6J|A Chain A, The Three-Dimensional Structure Of Capsule-Specific
Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid Synthetase From
Escherichia Coli
pdb|1H6J|B Chain B, The Three-Dimensional Structure Of Capsule-Specific
Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid Synthetase From
Escherichia Coli
Length = 245
Score = 24.3 bits (51), Expect = 3.7
Identities = 10/22 (45%), Positives = 15/22 (67%)
Query: 58 ALGVKGIADIWKISDDIKRGQA 79
AL V G+A++W +DD + QA
Sbjct: 37 ALQVAGVAEVWVATDDPRVEQA 58
>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor
Tyrosine Kinase And Juxtamembrane Region
pdb|1JPA|B Chain B, Crystal Structure Of Unphosphorylated Ephb2 Receptor
Tyrosine Kinase And Juxtamembrane Region
Length = 312
Score = 23.9 bits (50), Expect = 4.8
Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 11 YKKVVVTLGLVVTTNPLMAVTSPAEGVTETKTL-----VIQIISVLAIVGGCALGVKGIA 65
+ V+ G+V + P+M +T E + L +I ++ ++ G A G+K +A
Sbjct: 93 HPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLA 152
Query: 66 DIWKISDDI 74
D+ + D+
Sbjct: 153 DMNYVHRDL 161
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.321 0.138 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 601,319
Number of Sequences: 13198
Number of extensions: 19289
Number of successful extensions: 32
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 29
Number of HSP's gapped (non-prelim): 4
length of query: 115
length of database: 2,899,336
effective HSP length: 76
effective length of query: 39
effective length of database: 1,896,288
effective search space: 73955232
effective search space used: 73955232
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)