BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645176|ref|NP_207346.1| ribosomal protein L31
(rpl31) [Helicobacter pylori 26695]
(67 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1LNR|Y Chain Y, Crystal Structure Of The Large Ribosoma... 67 5e-13
pdb|1FFV|B Chain B, Carbon Monoxide Dehydrogenase From Hydr... 25 2.1
pdb|1GFF|1 Chain 1, Mol_id: 1; Molecule: Bacteriophage G4 C... 25 2.1
pdb|1NFP| Luxf Gene Product (Nonfluorescent Flavoprotein)... 23 4.8
pdb|1DHP|A Chain A, Dihydrodipicolinate Synthase >gi|194236... 23 6.2
pdb|1GYT|A Chain A, E. Coli Aminopeptidase A (Pepa) >gi|217... 23 8.1
pdb|3SIL| Sialidase From Salmonella Typhimurium 23 8.1
pdb|1DIM| Sialidase From Salmonella Typhimurium Complexed... 23 8.1
>pdb|1LNR|Y Chain Y, Crystal Structure Of The Large Ribosomal Subunit From
Deinococcus Radiodurans
Length = 73
Score = 66.6 bits (161), Expect = 5e-13
Identities = 28/65 (43%), Positives = 47/65 (72%), Gaps = 3/65 (4%)
Query: 1 MKKGIHPEYIPCKVTCVTSGKEI-EVLSTKPEMRIDISSFCHPFYTGSDKIADTAGRVEK 59
M+K +HP+ +PCK+ + G+ + E +ST+PE+ +D+ S HPF+TG ++ DT GRV+K
Sbjct: 1 MQKDLHPKAVPCKI--IYQGQVVMETMSTRPEIHVDVWSGVHPFWTGEERFLDTEGRVDK 58
Query: 60 FKQRY 64
F +R+
Sbjct: 59 FNKRF 63
>pdb|1FFV|B Chain B, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava
pdb|1FFV|E Chain E, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava
pdb|1FFU|B Chain B, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava Which Lacks The Mo-Pyranopterin Moiety Of
The Molybdenum Cofactor
pdb|1FFU|E Chain E, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava Which Lacks The Mo-Pyranopterin Moiety Of
The Molybdenum Cofactor
Length = 803
Score = 24.6 bits (52), Expect = 2.1
Identities = 12/56 (21%), Positives = 27/56 (47%), Gaps = 1/56 (1%)
Query: 2 KKGIHPEYIPCKVTCVTSGKEIEVLSTKPEMRIDISSFCHPFYTGSDKIADTAGRV 57
K GI+P Y+ V + G+ ++ + + E I ++F ++ + A G++
Sbjct: 271 KVGIYPGYVCAIVASIVLGRPVKWVEDRVE-NISTTAFARDYHMDGELAATPDGKI 325
>pdb|1GFF|1 Chain 1, Mol_id: 1; Molecule: Bacteriophage G4 Capsid Proteins Gpf,
Gpg, Gpj; Chain: 1, 2, 3; Mutation: Am(E)w4
Length = 426
Score = 24.6 bits (52), Expect = 2.1
Identities = 13/44 (29%), Positives = 19/44 (42%), Gaps = 1/44 (2%)
Query: 1 MKKGIHPEYIPCKVTCVTSGKEIEVLSTKPEMRIDISSFCHPFY 44
MK G++ +P VTC + L T P + + F H Y
Sbjct: 85 MKDGVNASPLP-PVTCSSGWDSAAYLGTIPSSTLKVPKFLHQGY 127
>pdb|1NFP| Luxf Gene Product (Nonfluorescent Flavoprotein) Complexed With
Myristic Acid And Fmn
Length = 228
Score = 23.5 bits (49), Expect = 4.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 17 VTSGKEIEVLSTKPEMRIDISSFCHP 42
V+ GK+I VL+T PE + + + P
Sbjct: 66 VSLGKQIHVLATSPETVVKAAKYGMP 91
>pdb|1DHP|A Chain A, Dihydrodipicolinate Synthase
pdb|1DHP|B Chain B, Dihydrodipicolinate Synthase
Length = 292
Score = 23.1 bits (48), Expect = 6.2
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 42 PFYTGSDKIADTAGRVEKFKQRYNLK 67
P TG D + +T GR+ K K +K
Sbjct: 136 PSRTGCDLLPETVGRLAKVKNIIGIK 161
>pdb|1GYT|A Chain A, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|B Chain B, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|C Chain C, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|D Chain D, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|E Chain E, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|F Chain F, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|G Chain G, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|H Chain H, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|I Chain I, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|J Chain J, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|K Chain K, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|L Chain L, E. Coli Aminopeptidase A (Pepa)
Length = 503
Score = 22.7 bits (47), Expect = 8.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 9 YIPCKVTCVTSGKEIEVLSTKPEMRI 34
Y P V SG+ +EVL+T E R+
Sbjct: 332 YRPGDVLTTMSGQTVEVLNTDAEGRL 357
>pdb|3SIL| Sialidase From Salmonella Typhimurium
Length = 379
Score = 22.7 bits (47), Expect = 8.1
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 33 RIDISSFCHPFYTGSDKIAD 52
R DIS + H Y+G K+ D
Sbjct: 306 RSDISLYAHNLYSGEVKLID 325
>pdb|1DIM| Sialidase From Salmonella Typhimurium Complexed With Epana
Inhibitor
pdb|2SIM| Sialidase (Neuraminidase) (E.C.3.2.1.18)
pdb|2SIL| Sialidase (E.C.3.2.1.18) (Neuraminidase)
pdb|1DIL| Sialidase From Salmonella Typhimurium Complexed With Apana And
Epana Inhibitors
Length = 381
Score = 22.7 bits (47), Expect = 8.1
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 33 RIDISSFCHPFYTGSDKIAD 52
R DIS + H Y+G K+ D
Sbjct: 308 RSDISLYAHNLYSGEVKLID 327
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.136 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 413,091
Number of Sequences: 13198
Number of extensions: 12729
Number of successful extensions: 20
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 8
length of query: 67
length of database: 2,899,336
effective HSP length: 43
effective length of query: 24
effective length of database: 2,331,822
effective search space: 55963728
effective search space used: 55963728
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)