BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645179|ref|NP_207349.1| hypothetical protein
[Helicobacter pylori 26695]
         (321 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|2BNH|    Porcine Ribonuclease Inhibitor >gi|1942713|pdb|...    30  0.48
pdb|1WDN|A  Chain A, Glutamine-Binding Protein >gi|1943541|p...    29  0.63
pdb|1A06|    Calmodulin-Dependent Protein Kinase From Rat          27  2.4
pdb|2LEF|A  Chain A, Lef1 Hmg Domain (From Mouse), Complexed...    27  3.1
pdb|1DIO|B  Chain B, Diol Dehydratase-Cyanocobalamin Complex...    27  4.1
pdb|1A4Y|A  Chain A, Ribonuclease Inhibitor-Angiogenin Compl...    25  9.1
pdb|1EHA|A  Chain A, Crystal Structure Of Glycosyltrehalose ...    25  9.1
pdb|1EH9|A  Chain A, Crystal Structure Of Sulfolobus Solfata...    25  9.1

>pdb|2BNH|   Porcine Ribonuclease Inhibitor
 pdb|1DFJ|I Chain I, Ribonuclease Inhibitor Complexed With Ribonuclease A
          Length = 457

 Score = 29.6 bits (65), Expect = 0.48
 Identities = 16/45 (35%), Positives = 23/45 (50%), Gaps = 2/45 (4%)

Query: 8   LENLDLSDVQNISKDISGATLEELSLKNLDKNLQILKEVGVAEIC 52
           LEN  L+      KD+ G    + SL+ LD     L + G+AE+C
Sbjct: 202 LENCGLTPAN--CKDLCGIVASQASLRELDLGSNGLGDAGIAELC 244



>pdb|1WDN|A Chain A, Glutamine-Binding Protein
 pdb|1GGG|A Chain A, Glutamine Binding Protein Open Ligand-Free Structure
 pdb|1GGG|B Chain B, Glutamine Binding Protein Open Ligand-Free Structure
          Length = 226

 Score = 29.3 bits (64), Expect = 0.63
 Identities = 23/77 (29%), Positives = 38/77 (48%), Gaps = 5/77 (6%)

Query: 164 LAVVIIQNSS---SLKEERGQESAIKSGTKKSFFNKANPIEENKPEPTPKLEEKPKEQDK 220
           L V++  N++   S+K+  G+  A+KSGT    + KAN I+       P ++    E   
Sbjct: 90  LLVMVKANNNDVKSVKDLDGKVVAVKSGTGSVDYAKAN-IKTKDLRQFPNIDNAYMELGT 148

Query: 221 QEKEAIKED-PNTIYII 236
              +A+  D PN +Y I
Sbjct: 149 NRADAVLHDTPNILYFI 165



>pdb|1A06|   Calmodulin-Dependent Protein Kinase From Rat
          Length = 332

 Score = 27.3 bits (59), Expect = 2.4
 Identities = 24/81 (29%), Positives = 39/81 (47%), Gaps = 7/81 (8%)

Query: 78  ARGFIQILEREYKIDLSAWMKEFDKACTFKEGVSEEQNQET-DPEEKTKNPL---KVEID 133
           A+ F QIL+ EY+ D   W    D A  F   + E+  ++    E+  ++P       +D
Sbjct: 224 AKLFEQILKAEYEFDSPYWDDISDSAKDFIRHLMEKDPEKRFTCEQALQHPWIAGDTALD 283

Query: 134 YSINQA---NIKLSKGLSKWK 151
            +I+Q+    IK +   SKWK
Sbjct: 284 KNIHQSVSEQIKKNFAKSKWK 304



>pdb|2LEF|A Chain A, Lef1 Hmg Domain (From Mouse), Complexed With Dna (15bp),
          Nmr, 12 Structures
          Length = 86

 Score = 26.9 bits (58), Expect = 3.1
 Identities = 14/63 (22%), Positives = 33/63 (52%)

Query: 34 KNLDKNLQILKEVGVAEICKATKIASKNIHSILEKRYESLSRVHARGFIQILEREYKIDL 93
          K L+  +  +KE+    + ++T   S  I+ IL +R+ +LSR     + ++  +E ++ +
Sbjct: 5  KPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHM 64

Query: 94 SAW 96
            +
Sbjct: 65 QLY 67



>pdb|1DIO|B Chain B, Diol Dehydratase-Cyanocobalamin Complex From Klebsiella
           Oxytoca
 pdb|1DIO|E Chain E, Diol Dehydratase-Cyanocobalamin Complex From Klebsiella
           Oxytoca
 pdb|1EEX|B Chain B, Crystal Structure Of The Diol Dehydratase-
           Adeninylpentylcobalamin Complex From Klebsiella Oxytoca
 pdb|1EEX|E Chain E, Crystal Structure Of The Diol Dehydratase-
           Adeninylpentylcobalamin Complex From Klebsiella Oxytoca
 pdb|1EGV|B Chain B, Crystal Structure Of The Diol Dehydratase-
           Adeninylpentylcobalamin Complex From Klebsella Oxytoca
           Under The Illuminated Condition.
 pdb|1EGV|E Chain E, Crystal Structure Of The Diol Dehydratase-
           Adeninylpentylcobalamin Complex From Klebsella Oxytoca
           Under The Illuminated Condition.
 pdb|1EGM|B Chain B, Crystal Structure Of Diol Dehydratase-Cyanocobalamin
           Complex At 100k.
 pdb|1EGM|E Chain E, Crystal Structure Of Diol Dehydratase-Cyanocobalamin
           Complex At 100k
          Length = 224

 Score = 26.6 bits (57), Expect = 4.1
 Identities = 13/46 (28%), Positives = 20/46 (43%)

Query: 195 NKANPIEENKPEPTPKLEEKPKEQDKQEKEAIKEDPNTIYIIPKKD 240
           N A   +   P+P P L ++      Q K AI     T Y++  K+
Sbjct: 171 NAARYAKRESPQPVPTLNDQMARPKYQAKSAILHIKETKYVVTGKN 216



>pdb|1A4Y|A Chain A, Ribonuclease Inhibitor-Angiogenin Complex
 pdb|1A4Y|D Chain D, Ribonuclease Inhibitor-Angiogenin Complex
          Length = 460

 Score = 25.4 bits (54), Expect = 9.1
 Identities = 12/45 (26%), Positives = 22/45 (48%)

Query: 21  KDISGATLEELSLKNLDKNLQILKEVGVAEICKATKIASKNIHSI 65
           +D+ G    + SL+ L      L +VG+AE+C      S  + ++
Sbjct: 216 RDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTL 260



>pdb|1EHA|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
           From Sulfolobus Solfataricus
          Length = 558

 Score = 25.4 bits (54), Expect = 9.1
 Identities = 19/48 (39%), Positives = 28/48 (57%), Gaps = 6/48 (12%)

Query: 107 KEGVSEEQNQETDP-EEKTKNPLKV--EID---YSINQANIKLSKGLS 148
           +EG  +E  Q+TDP +E T N  K+  +ID   +S  +  IK+ K LS
Sbjct: 441 REGRKKENGQDTDPQDESTFNASKLSWKIDEEIFSFYKILIKMRKELS 488



>pdb|1EH9|A Chain A, Crystal Structure Of Sulfolobus Solfataricus
           Glycosyltrehalose Trehalohydrolase
          Length = 558

 Score = 25.4 bits (54), Expect = 9.1
 Identities = 19/48 (39%), Positives = 28/48 (57%), Gaps = 6/48 (12%)

Query: 107 KEGVSEEQNQETDP-EEKTKNPLKV--EID---YSINQANIKLSKGLS 148
           +EG  +E  Q+TDP +E T N  K+  +ID   +S  +  IK+ K LS
Sbjct: 441 REGRKKENGQDTDPQDESTFNASKLSWKIDEEIFSFYKILIKMRKELS 488



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.310    0.130    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,811,887
Number of Sequences: 13198
Number of extensions: 73161
Number of successful extensions: 183
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 179
Number of HSP's gapped (non-prelim): 8
length of query: 321
length of database: 2,899,336
effective HSP length: 88
effective length of query: 233
effective length of database: 1,737,912
effective search space: 404933496
effective search space used: 404933496
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 54 (25.4 bits)