BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645180|ref|NP_207350.1| hypothetical protein
[Helicobacter pylori 26695]
(273 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1JT0|A Chain A, Crystal Structure Of A Cooperative Qacr... 30 0.39
pdb|1JT6|A Chain A, Crystal Structure Of The Multidrug Bind... 30 0.39
pdb|1JUS|A Chain A, Crystal Structure Of The Multidrug Bind... 28 0.86
pdb|2EBN| Endo-Beta-N-Acetylglucosaminidase F1 (E.C.3.2.1... 28 1.1
pdb|1VIW|B Chain B, Tenebrio Molitor Alpha-Amylase-Inhibito... 28 1.5
pdb|1OME|A Chain A, Crystal Structure Of The Omega Loop Del... 27 3.3
pdb|1FOH|C Chain C, Phenol Hydroxylase From Trichosporon Cu... 26 4.3
pdb|1B04|B Chain B, Structure Of The Adenylation Domain Of ... 26 4.3
pdb|1I60|A Chain A, Structural Genomics, Ioli Protein >gi|2... 26 5.6
>pdb|1JT0|A Chain A, Crystal Structure Of A Cooperative Qacr-Dna Complex
pdb|1JT0|B Chain B, Crystal Structure Of A Cooperative Qacr-Dna Complex
pdb|1JT0|C Chain C, Crystal Structure Of A Cooperative Qacr-Dna Complex
pdb|1JTX|A Chain A, Crystal Structure Of The Multidrug Binding Transcriptional
Regulator Qacr Bound To Crystal Violet
pdb|1JTX|B Chain B, Crystal Structure Of The Multidrug Binding Transcriptional
Regulator Qacr Bound To Crystal Violet
pdb|1JTX|D Chain D, Crystal Structure Of The Multidrug Binding Transcriptional
Regulator Qacr Bound To Crystal Violet
pdb|1JTX|E Chain E, Crystal Structure Of The Multidrug Binding Transcriptional
Regulator Qacr Bound To Crystal Violet
pdb|1JUP|A Chain A, Crystal Structure Of The Multidrug Binding Transcriptional
Repressor Qacr Bound To Malachite Green
pdb|1JUP|B Chain B, Crystal Structure Of The Multidrug Binding Transcriptional
Repressor Qacr Bound To Malachite Green
pdb|1JUP|D Chain D, Crystal Structure Of The Multidrug Binding Transcriptional
Repressor Qacr Bound To Malachite Green
pdb|1JUP|E Chain E, Crystal Structure Of The Multidrug Binding Transcriptional
Repressor Qacr Bound To Malachite Green
pdb|1JTY|A Chain A, Crystal Structure Of The Multidrug Binding Transcriptional
Regulator Qacr Bound To Ethidium
pdb|1JTY|B Chain B, Crystal Structure Of The Multidrug Binding Transcriptional
Regulator Qacr Bound To Ethidium
pdb|1JTY|D Chain D, Crystal Structure Of The Multidrug Binding Transcriptional
Regulator Qacr Bound To Ethidium
pdb|1JTY|E Chain E, Crystal Structure Of The Multidrug Binding Transcriptional
Regulator Qacr Bound To Ethidium
pdb|1JUM|A Chain A, Crystal Structure Of The Multidrug Binding Transcriptional
Repressor Qacr Bound To The Natural Drug Berberine
pdb|1JUM|B Chain B, Crystal Structure Of The Multidrug Binding Transcriptional
Repressor Qacr Bound To The Natural Drug Berberine
pdb|1JUM|D Chain D, Crystal Structure Of The Multidrug Binding Transcriptional
Repressor Qacr Bound To The Natural Drug Berberine
pdb|1JUM|E Chain E, Crystal Structure Of The Multidrug Binding Transcriptional
Repressor Qacr Bound To The Natural Drug Berberine
pdb|1JT0|D Chain D, Crystal Structure Of A Cooperative Qacr-Dna Complex
Length = 194
Score = 29.6 bits (65), Expect = 0.39
Identities = 40/170 (23%), Positives = 70/170 (40%), Gaps = 29/170 (17%)
Query: 113 IKMQSSSGENVFSYDLKTEYVLDPNILIETMKRHGFDFVDIRRVSLKEWEYDFSLQEVKL 172
+K+ SS N++ Y KT+ L F++I + +W+ + +++K
Sbjct: 29 VKLSESSKGNLY-YHFKTKENL---------------FLEILNIEESKWQEQWKKEQIKA 72
Query: 173 PNARV-------LVLSSE---PVE--FKEASGKYWLSVNQNAYLKISSNNPLWQPKIIFY 220
R L L++E P++ E +Y+ + + N + N + +IF
Sbjct: 73 KTNREKFYLYNELSLTTEYYYPLQNAIIEFYTEYYKTNSINEKMNKLENKYIDAYHVIFK 132
Query: 221 DENLKIIQIIAKENRQQEIALNLLNG-VRFIHITDAKNPIVLKNGISVVF 269
+ NL I N +IA N +NG V F H + I L N S +F
Sbjct: 133 EGNLNGEWSINDVNAVSKIAANAVNGIVTFTHEQNINERIKLMNKFSQIF 182
>pdb|1JT6|A Chain A, Crystal Structure Of The Multidrug Binding Protein Qacr
Bound To Dequalinium
pdb|1JT6|B Chain B, Crystal Structure Of The Multidrug Binding Protein Qacr
Bound To Dequalinium
pdb|1JT6|D Chain D, Crystal Structure Of The Multidrug Binding Protein Qacr
Bound To Dequalinium
pdb|1JT6|E Chain E, Crystal Structure Of The Multidrug Binding Protein Qacr
Bound To Dequalinium
Length = 188
Score = 29.6 bits (65), Expect = 0.39
Identities = 40/170 (23%), Positives = 70/170 (40%), Gaps = 29/170 (17%)
Query: 113 IKMQSSSGENVFSYDLKTEYVLDPNILIETMKRHGFDFVDIRRVSLKEWEYDFSLQEVKL 172
+K+ SS N++ Y KT+ L F++I + +W+ + +++K
Sbjct: 29 VKLSESSKGNLY-YHFKTKENL---------------FLEILNIEESKWQEQWKKEQIKA 72
Query: 173 PNARV-------LVLSSE---PVE--FKEASGKYWLSVNQNAYLKISSNNPLWQPKIIFY 220
R L L++E P++ E +Y+ + + N + N + +IF
Sbjct: 73 KTNREKFYLYNELSLTTEYYYPLQNAIIEFYTEYYKTNSINEKMNKLENKYIDAYHVIFK 132
Query: 221 DENLKIIQIIAKENRQQEIALNLLNG-VRFIHITDAKNPIVLKNGISVVF 269
+ NL I N +IA N +NG V F H + I L N S +F
Sbjct: 133 EGNLNGEWSINDVNAVSKIAANAVNGIVTFTHEQNINERIKLMNKFSQIF 182
>pdb|1JUS|A Chain A, Crystal Structure Of The Multidrug Binding Transcriptional
Repressor Qacr Bound To Rhodamine 6g
pdb|1JUS|B Chain B, Crystal Structure Of The Multidrug Binding Transcriptional
Repressor Qacr Bound To Rhodamine 6g
pdb|1JUS|D Chain D, Crystal Structure Of The Multidrug Binding Transcriptional
Repressor Qacr Bound To Rhodamine 6g
pdb|1JUS|E Chain E, Crystal Structure Of The Multidrug Binding Transcriptional
Repressor Qacr Bound To Rhodamine 6g
Length = 194
Score = 28.5 bits (62), Expect = 0.86
Identities = 40/170 (23%), Positives = 69/170 (40%), Gaps = 29/170 (17%)
Query: 113 IKMQSSSGENVFSYDLKTEYVLDPNILIETMKRHGFDFVDIRRVSLKEWEYDFSLQEVKL 172
+K+ SS N++ Y KT+ L F++I + +W+ + +++K
Sbjct: 29 VKLSESSKGNLY-YHFKTKENL---------------FLEILNIEESKWQEQWKKEQIKA 72
Query: 173 PNARV-------LVLSSE---PVE--FKEASGKYWLSVNQNAYLKISSNNPLWQPKIIFY 220
R L L++E P++ E +Y+ + + N N + +IF
Sbjct: 73 KTNREKFYLYNELSLTTEYYYPLQNAIIEFYTEYYKTNSINEKXNKLENKYIDAYHVIFK 132
Query: 221 DENLKIIQIIAKENRQQEIALNLLNG-VRFIHITDAKNPIVLKNGISVVF 269
+ NL I N +IA N +NG V F H + I L N S +F
Sbjct: 133 EGNLNGEWSINDVNAVSKIAANAVNGIVTFTHEQNINERIKLXNKFSQIF 182
>pdb|2EBN| Endo-Beta-N-Acetylglucosaminidase F1 (E.C.3.2.1.96)
(Endoglycosidase F1, Endo F1)
Length = 289
Score = 28.1 bits (61), Expect = 1.1
Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 4/107 (3%)
Query: 164 DFSLQEVKLPNARVLVLSSEPVEFKEASGKYWLSVNQNAYLKISSNNPLWQPKIIFYDEN 223
+F+L+ P ++VL S + + A+ K ++S N N +++ +P D+
Sbjct: 28 NFTLKNSGKPLVDMVVLFSANINYDAANDKVFVSNNPNVQHLLTNRAKYLKP---LQDKG 84
Query: 224 LKIIQIIAKENRQQEIALNLLNGVRFIHITDAKNPIVLKNGISVVFD 270
+K+I I + + IA NL + KN L N V FD
Sbjct: 85 IKVILSILGNHDRSGIA-NLSTARAKAFAQELKNTCDLYNLDGVFFD 130
>pdb|1VIW|B Chain B, Tenebrio Molitor Alpha-Amylase-Inhibitor Complex
Length = 198
Score = 27.7 bits (60), Expect = 1.5
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 12/114 (10%)
Query: 97 SINNSLSMMGYSYVLPIKMQSSSGENVFSYDLKTEYVLDPNILIETMKRHGFDFVDIRRV 156
S N+ SM Y PI+++ S+ NV S+D T + + NI G DFV +
Sbjct: 33 SYNSYDSMSRAFYSAPIQIRDSTTGNVASFD--TNFTM--NIRTHRQSAVGLDFVLVPVQ 88
Query: 157 SLKEWEYDFSLQEVKLPNARVLVLSSEPVEFKEASGKYWLSVNQNAYLKISSNN 210
E+D L + + + + S P + + G QNA ++I+ N+
Sbjct: 89 DTVTVEFDTFLSRISI-DVNNNDIKSVPWDVHDYDG-------QNAEVRITYNS 134
>pdb|1OME|A Chain A, Crystal Structure Of The Omega Loop Deletion Mutant
(Residues 163 - 178 Deleted) Of Beta-Lactamase From
Staphylococcus Aureus Pc1
pdb|1OME|B Chain B, Crystal Structure Of The Omega Loop Deletion Mutant
(Residues 163 - 178 Deleted) Of Beta-Lactamase From
Staphylococcus Aureus Pc1
Length = 242
Score = 26.6 bits (57), Expect = 3.3
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 82 KITFKASSNPLAFAKSI-----NNSLSMMGYSYVLPIKMQSSSGENVFSYDLKTEY 132
K+T +S P AF K++ N LS ++L + + + SG+ + + +Y
Sbjct: 126 KVTNPDTSTPAAFGKTLNKLIANGKLSKENKKFLLDLMLNNKSGDTLIKDGVPKDY 181
>pdb|1FOH|C Chain C, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|D Chain D, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|B Chain B, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|A Chain A, Phenol Hydroxylase From Trichosporon Cutaneum
Length = 664
Score = 26.2 bits (56), Expect = 4.3
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Query: 196 LSVNQNAYLKISSNNPLWQPKIIFYDENLKIIQIIAKENRQQEIALNLLNGVRF 249
+ V + A++K N I YDENL + K++ +QE+A N + G RF
Sbjct: 438 MDVFKEAFVK---GNEFASGTAINYDENL----VTDKKSSKQELAKNCVVGTRF 484
>pdb|1B04|B Chain B, Structure Of The Adenylation Domain Of An Nad+ Dependent
Ligase
pdb|1B04|A Chain A, Structure Of The Adenylation Domain Of An Nad+ Dependent
Ligase
Length = 318
Score = 26.2 bits (56), Expect = 4.3
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 139 LIETMKRHGFDFVDIRRVSLKEWEYDFSLQEV 170
L E + R+G+++ + R S+ + EYD +QE+
Sbjct: 13 LRELLNRYGYEYYVLDRPSVPDAEYDRLMQEL 44
>pdb|1I60|A Chain A, Structural Genomics, Ioli Protein
pdb|1I6N|A Chain A, 1.8 A Crystal Structure Of Ioli Protein With A Binding
Zinc Atom
Length = 278
Score = 25.8 bits (55), Expect = 5.6
Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 140 IETMKRHGFDFVDIRRV-SLKEWEYDFSLQEV 170
+E ++HG+D+++IR L E+ D SL ++
Sbjct: 20 LELCEKHGYDYIEIRTXDKLPEYLKDHSLDDL 51
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.137 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,450,469
Number of Sequences: 13198
Number of extensions: 54618
Number of successful extensions: 145
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 144
Number of HSP's gapped (non-prelim): 9
length of query: 273
length of database: 2,899,336
effective HSP length: 87
effective length of query: 186
effective length of database: 1,751,110
effective search space: 325706460
effective search space used: 325706460
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)