BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645181|ref|NP_207351.1| hypothetical protein
[Helicobacter pylori 26695]
(145 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1QBG|A Chain A, Crystal Structure Of Human Dt-Diaphoras... 24 7.8
pdb|1H69|A Chain A, Crystal Structure Of Human Nad[p]h-Quin... 24 7.8
pdb|1KBO|A Chain A, Complex Of Human Recombinant Nad(P)h:qu... 24 7.8
>pdb|1QBG|A Chain A, Crystal Structure Of Human Dt-Diaphorase (Nad(P)h
Oxidoreductase)
pdb|1QBG|C Chain C, Crystal Structure Of Human Dt-Diaphorase (Nad(P)h
Oxidoreductase)
pdb|1QBG|D Chain D, Crystal Structure Of Human Dt-Diaphorase (Nad(P)h
Oxidoreductase)
pdb|1QBG|B Chain B, Crystal Structure Of Human Dt-Diaphorase (Nad(P)h
Oxidoreductase)
Length = 272
Score = 23.9 bits (50), Expect = 7.8
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 48 WLLMPEHLIGWFLISFSGEFVADMAFGKKSKIFKTRFGI-SIVSGVS 93
W +P L GWF F GEF A F+++ + SI +G S
Sbjct: 104 WFGVPAILKGWFERVFIGEFAYTYAAMYDKGPFRSKKAVLSITTGGS 150
>pdb|1H69|A Chain A, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase
Co With 2,3,5,6,Tetramethyl-P-Benzoquinone (Duroquinone)
At 2.5 Angstrom Resolution
pdb|1H69|B Chain B, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase
Co With 2,3,5,6,Tetramethyl-P-Benzoquinone (Duroquinone)
At 2.5 Angstrom Resolution
pdb|1H69|C Chain C, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase
Co With 2,3,5,6,Tetramethyl-P-Benzoquinone (Duroquinone)
At 2.5 Angstrom Resolution
pdb|1H69|D Chain D, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase
Co With 2,3,5,6,Tetramethyl-P-Benzoquinone (Duroquinone)
At 2.5 Angstrom Resolution
pdb|1H66|A Chain A, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase
Co With
2,5-Diaziridinyl-3-Hydroxyl-6-Methyl-1,4-Benzoquinone
pdb|1H66|B Chain B, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase
Co With
2,5-Diaziridinyl-3-Hydroxyl-6-Methyl-1,4-Benzoquinone
pdb|1H66|C Chain C, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase
Co With
2,5-Diaziridinyl-3-Hydroxyl-6-Methyl-1,4-Benzoquinone
pdb|1H66|D Chain D, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase
Co With
2,5-Diaziridinyl-3-Hydroxyl-6-Methyl-1,4-Benzoquinone
Length = 273
Score = 23.9 bits (50), Expect = 7.8
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 48 WLLMPEHLIGWFLISFSGEFVADMAFGKKSKIFKTRFGI-SIVSGVS 93
W +P L GWF F GEF A F+++ + SI +G S
Sbjct: 105 WFGVPAILKGWFERVFIGEFAYTYAAMYDKGPFRSKKAVLSITTGGS 151
>pdb|1KBO|A Chain A, Complex Of Human Recombinant Nad(P)h:quinone Oxide
Reductase Type 1 With 5-Methoxy-1,2-Dimethyl-3-
(Phenoxymethyl)indole-4,7-Dione (Es1340)
pdb|1KBO|B Chain B, Complex Of Human Recombinant Nad(P)h:quinone Oxide
Reductase Type 1 With 5-Methoxy-1,2-Dimethyl-3-
(Phenoxymethyl)indole-4,7-Dione (Es1340)
pdb|1KBO|C Chain C, Complex Of Human Recombinant Nad(P)h:quinone Oxide
Reductase Type 1 With 5-Methoxy-1,2-Dimethyl-3-
(Phenoxymethyl)indole-4,7-Dione (Es1340)
pdb|1KBO|D Chain D, Complex Of Human Recombinant Nad(P)h:quinone Oxide
Reductase Type 1 With 5-Methoxy-1,2-Dimethyl-3-
(Phenoxymethyl)indole-4,7-Dione (Es1340)
pdb|1D4A|A Chain A, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase
At 1.7 A Resolution
pdb|1D4A|B Chain B, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase
At 1.7 A Resolution
pdb|1D4A|C Chain C, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase
At 1.7 A Resolution
pdb|1D4A|D Chain D, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase
At 1.7 A Resolution
pdb|1DXO|A Chain A, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase
Co With 2,3,5,6,Tetramethyl-P-Benzoquinone (Duroquinone)
At 2.5 Angstrom Resolution
pdb|1DXO|B Chain B, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase
Co With 2,3,5,6,Tetramethyl-P-Benzoquinone (Duroquinone)
At 2.5 Angstrom Resolution
pdb|1DXO|C Chain C, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase
Co With 2,3,5,6,Tetramethyl-P-Benzoquinone (Duroquinone)
At 2.5 Angstrom Resolution
pdb|1DXO|D Chain D, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase
Co With 2,3,5,6,Tetramethyl-P-Benzoquinone (Duroquinone)
At 2.5 Angstrom Resolution
pdb|1GG5|A Chain A, Crystal Structure Of A Complex Of Human Nad[p]h-Quinone
Oxidoreductase And A Chemotherapeutic Drug (E09) At 2.5
A Resolution
pdb|1GG5|B Chain B, Crystal Structure Of A Complex Of Human Nad[p]h-Quinone
Oxidoreductase And A Chemotherapeutic Drug (E09) At 2.5
A Resolution
pdb|1GG5|C Chain C, Crystal Structure Of A Complex Of Human Nad[p]h-Quinone
Oxidoreductase And A Chemotherapeutic Drug (E09) At 2.5
A Resolution
pdb|1GG5|D Chain D, Crystal Structure Of A Complex Of Human Nad[p]h-Quinone
Oxidoreductase And A Chemotherapeutic Drug (E09) At 2.5
A Resolution
pdb|1KBQ|A Chain A, Complex Of Human Nad(P)h Quinone Oxidoreductase With 5-
Methoxy-1,2-Dimethyl-3-(4-Nitrophenoxymethyl)indole-4,7-
Dione (Es936)
pdb|1KBQ|D Chain D, Complex Of Human Nad(P)h Quinone Oxidoreductase With 5-
Methoxy-1,2-Dimethyl-3-(4-Nitrophenoxymethyl)indole-4,7-
Dione (Es936)
pdb|1KBQ|B Chain B, Complex Of Human Nad(P)h Quinone Oxidoreductase With 5-
Methoxy-1,2-Dimethyl-3-(4-Nitrophenoxymethyl)indole-4,7-
Dione (Es936)
pdb|1KBQ|C Chain C, Complex Of Human Nad(P)h Quinone Oxidoreductase With 5-
Methoxy-1,2-Dimethyl-3-(4-Nitrophenoxymethyl)indole-4,7-
Dione (Es936)
Length = 273
Score = 23.9 bits (50), Expect = 7.8
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 48 WLLMPEHLIGWFLISFSGEFVADMAFGKKSKIFKTRFGI-SIVSGVS 93
W +P L GWF F GEF A F+++ + SI +G S
Sbjct: 105 WFGVPAILKGWFERVFIGEFAYTYAAMYDKGPFRSKKAVLSITTGGS 151
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.332 0.144 0.477
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 819,027
Number of Sequences: 13198
Number of extensions: 29369
Number of successful extensions: 35
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 35
Number of HSP's gapped (non-prelim): 3
length of query: 145
length of database: 2,899,336
effective HSP length: 80
effective length of query: 65
effective length of database: 1,843,496
effective search space: 119827240
effective search space used: 119827240
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 50 (23.9 bits)