BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645182|ref|NP_207352.1| acetyl-coenzyme A
carboxylase (accA) [Helicobacter pylori 26695]
(312 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1D4D|A Chain A, Crystal Structure Of The Succinate Comp... 30 0.46
pdb|1D4C|A Chain A, Crystal Structure Of The Uncomplexed Fo... 30 0.46
pdb|1QJ2|H Chain H, Co Dehydrogenase From Oligotropha Carbo... 28 1.0
pdb|1QJ2|B Chain B, Co Dehydrogenase From Oligotropha Carbo... 28 1.0
pdb|1GC9|A Chain A, The Crystal Structure Of Thermus Thermo... 28 1.0
pdb|1ISC|A Chain A, Iron(Iii) Superoxide Dismutase (E.C.1.1... 27 3.9
pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor >gi|1697482... 26 5.1
pdb|1IDM| 3-Isopropylmalate Dehydrogenase, Loop-Deleted C... 26 5.1
pdb|1XAA| 3-Isopropylmalate Dehydrogenase, Low Temperatur... 26 5.1
pdb|1XAC| Chimera Isopropylmalate Dehydrogenase Between B... 26 5.1
pdb|1IPD| 3-Isopropylmalate Dehydrogenase (E.C.1.1.1.85) 26 5.1
pdb|1WAL|A Chain A, 3-Isopropylmalate Dehydrogenase (Ipmdh)... 26 5.1
pdb|1B7A|A Chain A, Structure Of The Phosphatidylethanolami... 25 8.7
pdb|1CUZ| Cutinase, L81g, L182g Mutant 25 8.7
pdb|1G6S|A Chain A, Structure Of Epsp Synthase Liganded Wit... 25 8.7
pdb|1E6V|A Chain A, Methyl-Coenzyme M Reductase From Methan... 25 8.7
pdb|1A44| Phosphatidylethanolamine Binding Protein From C... 25 8.7
>pdb|1D4D|A Chain A, Crystal Structure Of The Succinate Complexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4E|A Chain A, Crystal Structure Of The Flavocytochrome C Fumarate
Reductase Of Shewanella Putrefaciens Strain Mr-1
Complexed With Fumarate
Length = 572
Score = 29.6 bits (65), Expect = 0.46
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Query: 160 IGAEERGQSEAIAKNLQEFASLKVPTISVIIGEGGSGGALAIAVAD 205
+ A++ Q +AIA A +K T VIIG GG+G A A++ D
Sbjct: 108 VDADKAAQDKAIA------AGVKETTDVVIIGSGGAGLAAAVSARD 147
>pdb|1D4C|A Chain A, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4C|D Chain D, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4C|B Chain B, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4C|C Chain C, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
Length = 572
Score = 29.6 bits (65), Expect = 0.46
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Query: 160 IGAEERGQSEAIAKNLQEFASLKVPTISVIIGEGGSGGALAIAVAD 205
+ A++ Q +AIA A +K T VIIG GG+G A A++ D
Sbjct: 108 VDADKAAQDKAIA------AGVKETTDVVIIGSGGAGLAAAVSARD 147
>pdb|1QJ2|H Chain H, Co Dehydrogenase From Oligotropha Carboxidovorans
Length = 809
Score = 28.5 bits (62), Expect = 1.0
Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 4/107 (3%)
Query: 119 LRNFGMPNPCGYRKALKMAKFAEKFNLPILMLVDTAGAYPGIGAEERGQSEAIAK-NLQE 177
++NF P Y L + + L + +DT G Y + AE++ + EA + +E
Sbjct: 419 IKNFIQPEQFPYMAPLGWEYDSGNYPLAMKKAMDTVG-YHQLRAEQKAKQEAFKRGETRE 477
Query: 178 FASLKVPTISVIIGEGGSGGA--LAIAVADKLAMMEYSIFSVISPEG 222
+ + + I+G G S L +++ D + + SVI+ G
Sbjct: 478 IMGIGISFFTEIVGAGPSKNCDILGVSMFDSAEIRIHPTGSVIARMG 524
>pdb|1QJ2|B Chain B, Co Dehydrogenase From Oligotropha Carboxidovorans
Length = 809
Score = 28.5 bits (62), Expect = 1.0
Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 4/107 (3%)
Query: 119 LRNFGMPNPCGYRKALKMAKFAEKFNLPILMLVDTAGAYPGIGAEERGQSEAIAK-NLQE 177
++NF P Y L + + L + +DT G Y + AE++ + EA + +E
Sbjct: 419 IKNFIQPEQFPYMAPLGWEYDSGNYPLAMKKAMDTVG-YHQLRAEQKAKQEAFKRGETRE 477
Query: 178 FASLKVPTISVIIGEGGSGGA--LAIAVADKLAMMEYSIFSVISPEG 222
+ + + I+G G S L +++ D + + SVI+ G
Sbjct: 478 IMGIGISFFTEIVGAGPSKNCDILGVSMFDSAEIRIHPTGSVIARMG 524
>pdb|1GC9|A Chain A, The Crystal Structure Of Thermus Thermophilus 3-
Isopropylmalate Dehydrogenase Mutated At 172th From Ala
To Gly
Length = 345
Score = 28.5 bits (62), Expect = 1.0
Identities = 19/63 (30%), Positives = 29/63 (45%), Gaps = 3/63 (4%)
Query: 153 TAGAYPGIGAEERGQSEAIAKNLQEFASLKVPTISVIIGEGGSGGALAIAVADKLAMMEY 212
T G Y G E RG SEA A N + ++ +V ++ + EG + DK ++E
Sbjct: 135 TGGIYFG---EPRGMSEAEAWNTERYSKPEVERVARVAFEGARKRRKHVVSVDKANVLEV 191
Query: 213 SIF 215
F
Sbjct: 192 GEF 194
>pdb|1ISC|A Chain A, Iron(Iii) Superoxide Dismutase (E.C.1.15.1.1) Complexed
With Azide
pdb|1ISC|B Chain B, Iron(Iii) Superoxide Dismutase (E.C.1.15.1.1) Complexed
With Azide
pdb|1ISA|A Chain A, Iron(Ii) Superoxide Dismutase (E.C.1.15.1.1)
pdb|1ISA|B Chain B, Iron(Ii) Superoxide Dismutase (E.C.1.15.1.1)
pdb|1ISB|A Chain A, Iron(Iii) Superoxide Dismutase (E.C.1.15.1.1)
pdb|1ISB|B Chain B, Iron(Iii) Superoxide Dismutase (E.C.1.15.1.1)
Length = 192
Score = 26.6 bits (57), Expect = 3.9
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 158 PGIGAEERGQ-SEAIAKNLQEFASLKVPTISVIIGEGGSGGALAIAVAD-KLAMMEYS 213
P G E G+ +EAIA + FA K I GSG + +D KLA++ S
Sbjct: 82 PNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTS 139
>pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor
pdb|1J7N|A Chain A, Anthrax Toxin Lethal Factor
pdb|1JKY|A Chain A, Crystal Structure Of The Anthrax Lethal Factor (Lf):
Wild- Type Lf Complexed With The N-Terminal Sequence Of
Mapkk2
Length = 776
Score = 26.2 bits (56), Expect = 5.1
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 8 ENHIKEIQNEIELALIRGDEDA-KEILEKRLDK 39
E H+KEI I ++G+E KE EK L+K
Sbjct: 33 EEHLKEIMKHIVKIEVKGEEAVKKEAAEKLLEK 65
>pdb|1IDM| 3-Isopropylmalate Dehydrogenase, Loop-Deleted Chimera
Length = 343
Score = 26.2 bits (56), Expect = 5.1
Identities = 18/63 (28%), Positives = 28/63 (43%), Gaps = 3/63 (4%)
Query: 153 TAGAYPGIGAEERGQSEAIAKNLQEFASLKVPTISVIIGEGGSGGALAIAVADKLAMMEY 212
T G Y G E RG SEA A N + ++ +V ++ + E + DK ++E
Sbjct: 133 TGGIYFG---EPRGMSEAEAWNTERYSKPEVERVARVAFEAARKRRKHVVSVDKANVLEV 189
Query: 213 SIF 215
F
Sbjct: 190 GEF 192
>pdb|1XAA| 3-Isopropylmalate Dehydrogenase, Low Temperature (100k) Structure
pdb|1XAB| 3-Isopropylmalate Dehydrogenase, Low Temperature (150k) Structure
pdb|1HEX| 3-Isopropylmalate Dehydrogenase (E.C.1.1.1.85) Complexed With
Beta-Nicotinamide Adenine Dinucleotide, Oxidized (Nad+)
pdb|1OSI|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|B Chain B, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|C Chain C, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|D Chain D, Structure Of 3-Isopropylmalate Dehydrogenase
Length = 345
Score = 26.2 bits (56), Expect = 5.1
Identities = 18/63 (28%), Positives = 28/63 (43%), Gaps = 3/63 (4%)
Query: 153 TAGAYPGIGAEERGQSEAIAKNLQEFASLKVPTISVIIGEGGSGGALAIAVADKLAMMEY 212
T G Y G E RG SEA A N + ++ +V ++ + E + DK ++E
Sbjct: 135 TGGIYFG---EPRGMSEAEAWNTERYSKPEVERVARVAFEAARKRRKHVVSVDKANVLEV 191
Query: 213 SIF 215
F
Sbjct: 192 GEF 194
>pdb|1XAC| Chimera Isopropylmalate Dehydrogenase Between Bacillus Subtilis
(M) And Thermus Thermophilus (T) From N-Terminal: 20% T
Middle 20% M Residual 60% T, Mutated At S82r. Low
Temperature (100k) Structure.
pdb|1XAD| Chimera Isopropylmalate Dehydrogenase Between Bacillus Subtilis
(M) And Thermus Thermophilus (T) From N-Terminal: 20% T
Middle 20% M Residual 60% T, Mutated At S82r. Low
Temperature (150k) Structure
Length = 345
Score = 26.2 bits (56), Expect = 5.1
Identities = 18/63 (28%), Positives = 28/63 (43%), Gaps = 3/63 (4%)
Query: 153 TAGAYPGIGAEERGQSEAIAKNLQEFASLKVPTISVIIGEGGSGGALAIAVADKLAMMEY 212
T G Y G E RG SEA A N + ++ +V ++ + E + DK ++E
Sbjct: 135 TGGIYFG---EPRGMSEAEAWNTERYSKPEVERVARVAFEAARKRRKHVVSVDKANVLEV 191
Query: 213 SIF 215
F
Sbjct: 192 GEF 194
>pdb|1IPD| 3-Isopropylmalate Dehydrogenase (E.C.1.1.1.85)
Length = 345
Score = 26.2 bits (56), Expect = 5.1
Identities = 18/63 (28%), Positives = 28/63 (43%), Gaps = 3/63 (4%)
Query: 153 TAGAYPGIGAEERGQSEAIAKNLQEFASLKVPTISVIIGEGGSGGALAIAVADKLAMMEY 212
T G Y G E RG SEA A N + ++ +V ++ + E + DK ++E
Sbjct: 135 TGGIYFG---EPRGMSEAEAWNTERYSKPEVERVARVAFEAARKRRKHVVSVDKANVLEV 191
Query: 213 SIF 215
F
Sbjct: 192 GEF 194
>pdb|1WAL|A Chain A, 3-Isopropylmalate Dehydrogenase (Ipmdh) Mutant (M219a)from
Thermus Thermophilus
Length = 345
Score = 26.2 bits (56), Expect = 5.1
Identities = 18/63 (28%), Positives = 28/63 (43%), Gaps = 3/63 (4%)
Query: 153 TAGAYPGIGAEERGQSEAIAKNLQEFASLKVPTISVIIGEGGSGGALAIAVADKLAMMEY 212
T G Y G E RG SEA A N + ++ +V ++ + E + DK ++E
Sbjct: 135 TGGIYFG---EPRGMSEAEAWNTERYSKPEVERVARVAFEAARKRRKHVVSVDKANVLEV 191
Query: 213 SIF 215
F
Sbjct: 192 GEF 194
>pdb|1B7A|A Chain A, Structure Of The Phosphatidylethanolamine-Binding Protein
From Bovine Brain
pdb|1B7A|B Chain B, Structure Of The Phosphatidylethanolamine-Binding Protein
From Bovine Brain
Length = 186
Score = 25.4 bits (54), Expect = 8.7
Identities = 13/29 (44%), Positives = 16/29 (54%)
Query: 255 DDIILEPSKGAHRDKFSAANTIKEYFLDA 283
D+ IL G HR KF A+ K+Y L A
Sbjct: 133 DEPILSNRSGDHRGKFKVASFRKKYELGA 161
>pdb|1CUZ| Cutinase, L81g, L182g Mutant
Length = 214
Score = 25.4 bits (54), Expect = 8.7
Identities = 20/59 (33%), Positives = 27/59 (44%), Gaps = 6/59 (10%)
Query: 155 GAYPGIGAEE---RGQSEAIAKN---LQEFASLKVPTISVIIGEGGSGGALAIAVADKL 207
GAY G + RG S A + L + A+ K P ++I G G ALA A + L
Sbjct: 75 GAYRATGGDNALPRGTSSAAIREMLGLFQQANTKCPDATLIAGGYSQGAALAAASIEDL 133
>pdb|1G6S|A Chain A, Structure Of Epsp Synthase Liganded With Shikimate-3-
Phosphate And Glyphosate
pdb|1G6T|A Chain A, Structure Of Epsp Synthase Liganded With Shikimate-3-
Phosphate
Length = 427
Score = 25.4 bits (54), Expect = 8.7
Identities = 23/101 (22%), Positives = 43/101 (41%), Gaps = 8/101 (7%)
Query: 9 NHIKEIQNEIELALI--RGDEDAKEILEKRLDKEVKSIYSNLTDFQKLQLARHPDRPYAM 66
NHI + I A + +G + I R+ KE +++ T+ +K+
Sbjct: 309 NHIPDAAMTIATAALFAKGTTTLRNIYNWRV-KETDRLFAMATELRKVGAEVEEGH---- 363
Query: 67 DYIDLILKDKYEVFGDRHYNDDKAIVCF-VGKIDNVPVVVI 106
DYI + +K YND + +CF + + + PV ++
Sbjct: 364 DYIRITPPEKLNFAEIATYNDHRMAMCFSLVALSDTPVTIL 404
>pdb|1E6V|A Chain A, Methyl-Coenzyme M Reductase From Methanopyrus Kandleri
pdb|1E6V|D Chain D, Methyl-Coenzyme M Reductase From Methanopyrus Kandleri
Length = 553
Score = 25.4 bits (54), Expect = 8.7
Identities = 14/39 (35%), Positives = 25/39 (63%), Gaps = 2/39 (5%)
Query: 5 LDFENH--IKEIQNEIELALIRGDEDAKEILEKRLDKEV 41
L F N+ ++++ ++I +I G + A +LE+RL KEV
Sbjct: 89 LTFVNNAAMQQMWDDIRRTVIVGMDTAHRVLERRLGKEV 127
>pdb|1A44| Phosphatidylethanolamine Binding Protein From Calf Brain
Length = 185
Score = 25.4 bits (54), Expect = 8.7
Identities = 13/29 (44%), Positives = 16/29 (54%)
Query: 255 DDIILEPSKGAHRDKFSAANTIKEYFLDA 283
D+ IL G HR KF A+ K+Y L A
Sbjct: 133 DEPILSNRSGDHRGKFKVASFRKKYELGA 161
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.138 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,803,779
Number of Sequences: 13198
Number of extensions: 77697
Number of successful extensions: 269
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 263
Number of HSP's gapped (non-prelim): 17
length of query: 312
length of database: 2,899,336
effective HSP length: 88
effective length of query: 224
effective length of database: 1,737,912
effective search space: 389292288
effective search space used: 389292288
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)