BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645183|ref|NP_207353.1| beta ketoacyl-acyl carrier
protein synthase II (fabF) [Helicobacter pylori 26695]
(412 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1KAS| Beta-Ketoacyl-Acp Synthase Ii From Escherichia ... 394 e-111
pdb|1E5M|A Chain A, Beta Ketoacyl Acyl Carrier Protein Synt... 367 e-102
pdb|1DD8|A Chain A, Crystal Structure Of Beta-Ketoacyl-[acy... 239 4e-64
pdb|1FJ8|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Ca... 238 1e-63
pdb|1F91|A Chain A, Beta-Ketoacyl-[acyl-Carrier-Protein] Sy... 235 6e-63
pdb|1EK4|A Chain A, Beta-Ketoacyl [acyl Carrier Protein] Sy... 235 6e-63
pdb|1HNJ|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp ... 33 0.045
pdb|1EBL|A Chain A, The 1.8 A Crystal Structure And Active ... 30 0.50
pdb|1RTP|1 Chain 1, Alpha-Parvalbumin >gi|494574|pdb|1RTP|2... 28 1.9
pdb|1CJS|A Chain A, Crystal Structure Of Ribosomal Protein ... 27 4.3
pdb|2PVB|A Chain A, Pike Parvalbumin (Pi 4.10) At Low Tempe... 27 4.3
pdb|1B8R|A Chain A, Parvalbumin 27 4.3
pdb|1BU3| Refined Crystal Structure Of Calcium-Bound Silv... 27 4.3
pdb|1PAL| Parvalbumin (Pi 4.10) Complexed With Ca, Ca, An... 27 4.3
pdb|4CPV| Calcium-Binding Parvalbumin (pI4.25) >gi|229739... 27 4.3
pdb|1G33|A Chain A, Crystal Structure Of Rat Parvalbumin Wi... 27 5.6
pdb|1GGZ|A Chain A, Crystal Structure Of The Calmodulin-Lik... 26 7.3
pdb|1CX1|A Chain A, Second N-Terminal Cellulose-Binding Dom... 26 7.3
pdb|2HIS| Cellulomonas Fimi XylanaseCELLULASE DOUBLE MUTA... 26 9.5
pdb|1J01|A Chain A, Crystal Structure Of The Xylanase Cex W... 26 9.5
>pdb|1KAS| Beta-Ketoacyl-Acp Synthase Ii From Escherichia Coli
pdb|1B3N|A Chain A, Beta-Ketoacyl Carrier Protein Synthase As A Drug Target,
Implications From The Crystal Structure Of A Complex
With The Inhibitor Cerulenin
Length = 412
Score = 394 bits (1013), Expect = e-111
Identities = 204/414 (49%), Positives = 278/414 (66%), Gaps = 9/414 (2%)
Query: 2 RRIVVTGMGMINSLGLNKEDSFLAIAKGECGIKHIESFDASAFPVRIAGEITDFDPTEVM 61
RR+VVTG+GM++ +G E ++ A+ G+ GI I+ FD SA+ + AG + DF+ +++
Sbjct: 3 RRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDII 62
Query: 62 NPKDVKKAGRFIQLALKATREAMKDSGILDAHNRCPEELANRMGVSSGSGIGGLGNIEAN 121
+ K+ +K FIQ + A +AM+DSG+ EE A R+G + GSGIGGLG IE N
Sbjct: 63 SRKEQRKMDAFIQYGIVAGVQAMQDSGL-----EITEENATRIGAAIGSGIGGLGLIEEN 117
Query: 122 SIFCFEKGPRKVNPFFITSALVNMIGGFTSIEFGIKGPNLSSVTACAAGTHAIIEAVKTI 181
GPRK++PFF+ S +VNM+ G +I +G++GP++S TAC +G H I A + I
Sbjct: 118 HTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARII 177
Query: 182 LLNGADKMLVVGAESTICPVGIGGFASIKALSTRNDDPKKASRPFDKDRNGFVMGEGAGA 241
AD M+ GAE P+G+GGF + +ALSTRND+P+ ASRP+DK+R+GFV+G+GAG
Sbjct: 178 AYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGM 237
Query: 242 LVLEEYESAKRRGAKIYAEFAGYGESGDANHITAPAPEGEGAFRAMKMALEMAKVE---I 298
LVLEEYE AK+RGAKIYAE G+G S DA H+T+P G GA AM AL A +E I
Sbjct: 238 LVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQI 297
Query: 299 GYVNAHGTSTHYNDLYESIALKNVFGSKEKVPPVSSTKGQIGHCLGAAGALEAVISIMAM 358
GYVNAHGTST D E+ A+K +FG VSSTK GH LGAAGA+E++ SI+A+
Sbjct: 298 GYVNAHGTSTPAGDKAEAQAVKTIFGEAASRVLVSSTKSMTGHLLGAAGAVESIYSILAL 357
Query: 359 NQGILPPTINQEMPDPECDLDYIPNAARE-KRVDAVMSNSFGFGGTNGVVIFKK 411
+PPTIN + PD CDLD++P+ AR+ ++ + NSFGFGGTNG +IFKK
Sbjct: 358 RDQAVPPTINLDNPDEGCDLDFVPHEARQVSGMEYTLCNSFGFGGTNGSLIFKK 411
>pdb|1E5M|A Chain A, Beta Ketoacyl Acyl Carrier Protein Synthase Ii (Kasii)
From Synechocystis Sp
Length = 416
Score = 367 bits (941), Expect = e-102
Identities = 195/413 (47%), Positives = 263/413 (63%), Gaps = 8/413 (1%)
Query: 2 RRIVVTGMGMINSLGLNKEDSFLAIAKGECGIKHIESFDASAFPVRIAGEITDFDPTEVM 61
+R+VVTG+G I +G +D + + +G GI I FDAS R GE+ DFD T+ +
Sbjct: 7 KRVVVTGLGAITPIGNTLQDYWQGLMEGRNGIGPITRFDASDQACRFGGEVKDFDATQFL 66
Query: 62 NPKDVKKAGRFIQLALKATREAMKDSGILDAHNRCPEELANRMGVSSGSGIGGLGNIEAN 121
+ K+ K+ RF A+ A+++A+ D+ ++ E A+ +GV G+GIGGL +E
Sbjct: 67 DRKEAKRMDRFCHFAVCASQQAINDAKLV-----INELNADEIGVLIGTGIGGLKVLEDQ 121
Query: 122 SIFCFEKGPRKVNPFFITSALVNMIGGFTSIEFGIKGPNLSSVTACAAGTHAIIEAVKTI 181
+KGP + +PF I + NM G T+I G KGPN +VTACAAG++AI +A + +
Sbjct: 122 QTILLDKGPSRCSPFMIPMMIANMASGLTAINLGAKGPNNCTVTACAAGSNAIGDAFRLV 181
Query: 182 LLNGADKMLVVGAESTICPVGIGGFASIKALSTRNDDPKKASRPFDKDRNGFVMGEGAGA 241
A M+ G E+ I P+ GFAS +ALS RNDDP ASRPFDKDR+GFVMGEG+G
Sbjct: 182 QNGYAKAMICGGTEAAITPLSYAGFASARALSFRNDDPLHASRPFDKDRDGFVMGEGSGI 241
Query: 242 LVLEEYESAKRRGAKIYAEFAGYGESGDANHITAPAPEGEGAFRAMKMALEMAKVE---I 298
L+LEE ESA RGAKIY E GY + DA HITAP P+G GA RA+ AL+ + ++ +
Sbjct: 242 LILEELESALARGAKIYGEMVGYAMTCDAYHITAPVPDGRGATRAIAWALKDSGLKPEMV 301
Query: 299 GYVNAHGTSTHYNDLYESIALKNVFGSKEKVPPVSSTKGQIGHCLGAAGALEAVISIMAM 358
Y+NAHGTST ND+ E+ A+K G+ VSSTK GH LG +G +EAV ++MA+
Sbjct: 302 SYINAHGTSTPANDVTETRAIKQALGNHAYNIAVSSTKSMTGHLLGGSGGIEAVATVMAI 361
Query: 359 NQGILPPTINQEMPDPECDLDYIPNAAREKRVDAVMSNSFGFGGTNGVVIFKK 411
+ +PPTIN E PDPECDLDY+P +R VD +SNSFGFGG N + FKK
Sbjct: 362 AEDKVPPTINLENPDPECDLDYVPGQSRALIVDVALSNSFGFGGHNVTLAFKK 414
>pdb|1DD8|A Chain A, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|B Chain B, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|C Chain C, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|D Chain D, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
Length = 406
Score = 239 bits (610), Expect = 4e-64
Identities = 150/416 (36%), Positives = 225/416 (54%), Gaps = 18/416 (4%)
Query: 1 MRRIVVTGMGMINSLGLNKEDSFLAIAKGECGIKHIESFDASAFPVRIAGEITDFDPTEV 60
M+R+V+TG+G+++S+G N+++ ++ +G GI + S + G + D T +
Sbjct: 1 MKRVVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGL 59
Query: 61 MNPKDVKKAGRFIQLALKATREAMKDSGILDAHNRCPEELAN--RMGVSSGSGIGGLGNI 118
++ K V+ A + +A+ D+G+ PE N R+G+ +GSG GG
Sbjct: 60 IDRKVVRFMSDASIYAFLSMEQAIADAGL------SPEAYQNNPRVGLIAGSG-GGSPRF 112
Query: 119 EANSIFCFE--KGPRKVNPFFITSALVNMIGGFTSIEFGIKGPNLSSVTACAAGTHAIIE 176
+ +G + V P+ +T A+ + + + F I G N S +ACA H I
Sbjct: 113 QVFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGN 172
Query: 177 AVKTILLNGADKMLVVGAESTICPVGIGGFASIKALSTR-NDDPKKASRPFDKDRNGFVM 235
AV+ I L D + G E +C F ++ ALST+ ND P+KASR +D R+GFV+
Sbjct: 173 AVEQIQLGKQDIVFAGGGEE-LCWEMACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVI 231
Query: 236 GEGAGALVLEEYESAKRRGAKIYAEFAGYGESGDANHITAPAPEGEGAFRAMKMALEMAK 295
G G +V+EE E A RGA IYAE GYG + D + AP+ GEGA R MKMA+
Sbjct: 232 AGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAPS--GEGAVRCMKMAMHGVD 289
Query: 296 VEIGYVNAHGTSTHYNDLYESIALKNVFGSKEKVPPVSSTKGQIGHCLGAAGALEAVISI 355
I Y+N+HGTST D+ E A++ VFG K P +S+TK GH LGAAG EA+ S+
Sbjct: 290 TPIDYLNSHGTSTPVGDVKELAAIREVFGDKS--PAISATKAMTGHSLGAAGVQEAIYSL 347
Query: 356 MAMNQGILPPTINQEMPDPECDLDYIPNAAREKRVDAVMSNSFGFGGTNGVVIFKK 411
+ + G + P+IN E D + I ++ + VMSNSFGFGGTN ++ +K
Sbjct: 348 LMLEHGFIAPSINIEELDEQAAGLNIVTETTDRELTTVMSNSFGFGGTNATLVMRK 403
>pdb|1FJ8|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ4|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1G5X|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
Length = 406
Score = 238 bits (606), Expect = 1e-63
Identities = 150/416 (36%), Positives = 224/416 (53%), Gaps = 18/416 (4%)
Query: 1 MRRIVVTGMGMINSLGLNKEDSFLAIAKGECGIKHIESFDASAFPVRIAGEITDFDPTEV 60
M+R V+TG+G+++S+G N+++ ++ +G GI + S + G + D T +
Sbjct: 1 MKRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGL 59
Query: 61 MNPKDVKKAGRFIQLALKATREAMKDSGILDAHNRCPEELAN--RMGVSSGSGIGGLGNI 118
++ K V+ A + +A+ D+G+ PE N R+G+ +GSG GG
Sbjct: 60 IDRKVVRFMSDASIYAFLSMEQAIADAGL------SPEAYQNNPRVGLIAGSG-GGSPRF 112
Query: 119 EANSIFCFE--KGPRKVNPFFITSALVNMIGGFTSIEFGIKGPNLSSVTACAAGTHAIIE 176
+ +G + V P+ +T A+ + + + F I G N S +ACA H I
Sbjct: 113 QVFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGN 172
Query: 177 AVKTILLNGADKMLVVGAESTICPVGIGGFASIKALSTR-NDDPKKASRPFDKDRNGFVM 235
AV+ I L D + G E +C F ++ ALST+ ND P+KASR +D R+GFV+
Sbjct: 173 AVEQIQLGKQDIVFAGGGEE-LCWEMACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVI 231
Query: 236 GEGAGALVLEEYESAKRRGAKIYAEFAGYGESGDANHITAPAPEGEGAFRAMKMALEMAK 295
G G +V+EE E A RGA IYAE GYG + D + AP+ GEGA R MKMA+
Sbjct: 232 AGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAPS--GEGAVRCMKMAMHGVD 289
Query: 296 VEIGYVNAHGTSTHYNDLYESIALKNVFGSKEKVPPVSSTKGQIGHCLGAAGALEAVISI 355
I Y+N+HGTST D+ E A++ VFG K P +S+TK GH LGAAG EA+ S+
Sbjct: 290 TPIDYLNSHGTSTPVGDVKELAAIREVFGDKS--PAISATKAMTGHSLGAAGVQEAIYSL 347
Query: 356 MAMNQGILPPTINQEMPDPECDLDYIPNAAREKRVDAVMSNSFGFGGTNGVVIFKK 411
+ + G + P+IN E D + I ++ + VMSNSFGFGGTN ++ +K
Sbjct: 348 LMLEHGFIAPSINIEELDEQAAGLNIVTETTDRELTTVMSNSFGFGGTNATLVMRK 403
>pdb|1F91|A Chain A, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|B Chain B, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|C Chain C, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|D Chain D, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
Length = 406
Score = 235 bits (600), Expect = 6e-63
Identities = 149/416 (35%), Positives = 224/416 (53%), Gaps = 18/416 (4%)
Query: 1 MRRIVVTGMGMINSLGLNKEDSFLAIAKGECGIKHIESFDASAFPVRIAGEITDFDPTEV 60
M+R+V+TG+G+++S+G N+++ ++ +G GI + S + G + D T +
Sbjct: 1 MKRVVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGL 59
Query: 61 MNPKDVKKAGRFIQLALKATREAMKDSGILDAHNRCPEELAN--RMGVSSGSGIGGLGNI 118
++ K V+ A + +A+ D+G+ PE N R+G+ +GSG GG
Sbjct: 60 IDRKVVRFMSDASIYAFLSMEQAIADAGL------SPEAYQNNPRVGLIAGSG-GGSPRF 112
Query: 119 EANSIFCFE--KGPRKVNPFFITSALVNMIGGFTSIEFGIKGPNLSSVTACAAGTHAIIE 176
+ +G + V P+ +T A+ + + + F I G N S +A A H I
Sbjct: 113 QVFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSASATSAHCIGN 172
Query: 177 AVKTILLNGADKMLVVGAESTICPVGIGGFASIKALSTR-NDDPKKASRPFDKDRNGFVM 235
AV+ I L D + G E +C F ++ ALST+ ND P+KASR +D R+GFV+
Sbjct: 173 AVEQIQLGKQDIVFAGGGEE-LCWEMACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVI 231
Query: 236 GEGAGALVLEEYESAKRRGAKIYAEFAGYGESGDANHITAPAPEGEGAFRAMKMALEMAK 295
G G +V+EE E A RGA IYAE GYG + D + AP+ GEGA R MKMA+
Sbjct: 232 AGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAPS--GEGAVRCMKMAMHGVD 289
Query: 296 VEIGYVNAHGTSTHYNDLYESIALKNVFGSKEKVPPVSSTKGQIGHCLGAAGALEAVISI 355
I Y+N+HGTST D+ E A++ VFG K P +S+TK GH LGAAG EA+ S+
Sbjct: 290 TPIDYLNSHGTSTPVGDVKELAAIREVFGDKS--PAISATKAMTGHSLGAAGVQEAIYSL 347
Query: 356 MAMNQGILPPTINQEMPDPECDLDYIPNAAREKRVDAVMSNSFGFGGTNGVVIFKK 411
+ + G + P+IN E D + I ++ + VMSNSFGFGGTN ++ +K
Sbjct: 348 LMLEHGFIAPSINIEELDEQAAGLNIVTETTDRELTTVMSNSFGFGGTNATLVMRK 403
>pdb|1EK4|A Chain A, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|B Chain B, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|C Chain C, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|D Chain D, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
Length = 418
Score = 235 bits (600), Expect = 6e-63
Identities = 149/416 (35%), Positives = 224/416 (53%), Gaps = 18/416 (4%)
Query: 1 MRRIVVTGMGMINSLGLNKEDSFLAIAKGECGIKHIESFDASAFPVRIAGEITDFDPTEV 60
M+R+V+TG+G+++S+G N+++ ++ +G GI + S + G + D T +
Sbjct: 13 MKRVVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGL 71
Query: 61 MNPKDVKKAGRFIQLALKATREAMKDSGILDAHNRCPEELAN--RMGVSSGSGIGGLGNI 118
++ K V+ A + +A+ D+G+ PE N R+G+ +GSG GG
Sbjct: 72 IDRKVVRFMSDASIYAFLSMEQAIADAGL------SPEAYQNNPRVGLIAGSG-GGSPRF 124
Query: 119 EANSIFCFE--KGPRKVNPFFITSALVNMIGGFTSIEFGIKGPNLSSVTACAAGTHAIIE 176
+ +G + V P+ +T A+ + + + F I G N S +A A H I
Sbjct: 125 QVFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSASATSAHCIGN 184
Query: 177 AVKTILLNGADKMLVVGAESTICPVGIGGFASIKALSTR-NDDPKKASRPFDKDRNGFVM 235
AV+ I L D + G E +C F ++ ALST+ ND P+KASR +D R+GFV+
Sbjct: 185 AVEQIQLGKQDIVFAGGGEE-LCWEMACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVI 243
Query: 236 GEGAGALVLEEYESAKRRGAKIYAEFAGYGESGDANHITAPAPEGEGAFRAMKMALEMAK 295
G G +V+EE E A RGA IYAE GYG + D + AP+ GEGA R MKMA+
Sbjct: 244 AGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAPS--GEGAVRCMKMAMHGVD 301
Query: 296 VEIGYVNAHGTSTHYNDLYESIALKNVFGSKEKVPPVSSTKGQIGHCLGAAGALEAVISI 355
I Y+N+HGTST D+ E A++ VFG K P +S+TK GH LGAAG EA+ S+
Sbjct: 302 TPIDYLNSHGTSTPVGDVKELAAIREVFGDKS--PAISATKAMTGHSLGAAGVQEAIYSL 359
Query: 356 MAMNQGILPPTINQEMPDPECDLDYIPNAAREKRVDAVMSNSFGFGGTNGVVIFKK 411
+ + G + P+IN E D + I ++ + VMSNSFGFGGTN ++ +K
Sbjct: 360 LMLEHGFIAPSINIEELDEQAAGLNIVTETTDRELTTVMSNSFGFGGTNATLVMRK 415
>pdb|1HNJ|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii +
Malonyl-Coa
pdb|1HND|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii-Coa
Complex
pdb|1HN9|B Chain B, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii
pdb|1HN9|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii
pdb|1HNK|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii, Apo
Tetragonal Form
Length = 317
Score = 33.5 bits (75), Expect = 0.045
Identities = 45/184 (24%), Positives = 70/184 (37%), Gaps = 37/184 (20%)
Query: 87 SGILDAHNRCPEELANRMGVSSGSGIGGLGNIEANSIFCFEKGPRKVNPFFITSA--LVN 144
+GI + H P E + MG + + + IE + I F ++A + +
Sbjct: 37 TGIRERHIAAPNETVSTMGFEAATRAIEMAGIEKDQIGLIVVATTSATHAFPSAACQIQS 96
Query: 145 MIGGFTSIEFGIKG-PNLSSVTACAAGTHAIIEAVKTILLNGADKMLVVGAESTICPVGI 203
M+ GIKG P ACA T+A+ A + + LVVG++
Sbjct: 97 ML--------GIKGCPAFDVAAACAGFTYALSVADQYVKSGAVKYALVVGSD-------- 140
Query: 204 GGFASIKALSTRNDDPKKASRPFDKDRNGFVM-GEGAGALVLEEYESAKRRGAKIYAEFA 262
+ R DP DR ++ G+GAGA VL E ++A+
Sbjct: 141 --------VLARTCDP--------TDRGTIIIFGDGAGAAVLAASEEPGIISTHLHAD-G 183
Query: 263 GYGE 266
YGE
Sbjct: 184 SYGE 187
>pdb|1EBL|A Chain A, The 1.8 A Crystal Structure And Active Site Architecture
Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase Iii
(Fabh) From Escherichia Coli
pdb|1EBL|B Chain B, The 1.8 A Crystal Structure And Active Site Architecture
Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase Iii
(Fabh) From Escherichia Coli
Length = 317
Score = 30.0 bits (66), Expect = 0.50
Identities = 43/182 (23%), Positives = 64/182 (34%), Gaps = 33/182 (18%)
Query: 87 SGILDAHNRCPEELANRMGVSSGSGIGGLGNIEANSIFCFEKGPRKVNPFFITSALVNMI 146
+GI + H P E + G + + IE + I F ++A
Sbjct: 37 TGIRERHIAAPNETVSTXGFEAATRAIEXAGIEKDQIGLIVVATTSATHAFPSAACQ--- 93
Query: 147 GGFTSIEFGIKG-PNLSSVTACAAGTHAIIEAVKTILLNGADKMLVVGAESTICPVGIGG 205
GIKG P ACA T+A+ A + + LVVG++
Sbjct: 94 ---IQSXLGIKGCPAFDVAAACAGFTYALSVADQYVKSGAVKYALVVGSD---------- 140
Query: 206 FASIKALSTRNDDPKKASRPFDKDRNGFVM-GEGAGALVLEEYESAKRRGAKIYAEFAGY 264
+ R DP DR ++ G+GAGA VL E ++A+ Y
Sbjct: 141 ------VLARTCDP--------TDRGTIIIFGDGAGAAVLAASEEPGIISTHLHAD-GSY 185
Query: 265 GE 266
GE
Sbjct: 186 GE 187
>pdb|1RTP|1 Chain 1, Alpha-Parvalbumin
pdb|1RTP|2 Chain 2, Alpha-Parvalbumin
pdb|1RTP|3 Chain 3, Alpha-Parvalbumin
Length = 109
Score = 28.1 bits (61), Expect = 1.9
Identities = 21/78 (26%), Positives = 35/78 (43%), Gaps = 1/78 (1%)
Query: 180 TILLNGADKMLVVGAESTICPVGIGGFASIKALSTRN-DDPKKASRPFDKDRNGFVMGEG 238
T LL+ D +GA + F + L ++ DD KK DKD++GF+ +
Sbjct: 3 TDLLSAEDIKKAIGAFTAADSFDHKKFFQMVGLKKKSADDVKKVFHILDKDKSGFIEEDE 62
Query: 239 AGALVLEEYESAKRRGAK 256
G+++ A+ AK
Sbjct: 63 LGSILKGFSSDARDLSAK 80
>pdb|1CJS|A Chain A, Crystal Structure Of Ribosomal Protein L1 From
Methanococcus Jannaschii
Length = 219
Score = 26.9 bits (58), Expect = 4.3
Identities = 21/68 (30%), Positives = 33/68 (47%), Gaps = 4/68 (5%)
Query: 132 KVNPFFITSA-LVNMIGGFTSIEFGIKGPNLSSVTACAAGTHAIIEAVKTILLNGADK-- 188
K + FFI A L+ +IG + + G +G V A A + KT+++N DK
Sbjct: 100 KAHDFFIAQADLMPLIGRYMGVILGPRGKMPKPVPANANIKPLVERLKKTVVINTRDKPY 159
Query: 189 -MLVVGAE 195
++VG E
Sbjct: 160 FQVLVGNE 167
>pdb|2PVB|A Chain A, Pike Parvalbumin (Pi 4.10) At Low Temperature (100k) And
Atomic Resolution (0.91 A)
Length = 107
Score = 26.9 bits (58), Expect = 4.3
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 206 FASIKALSTRNDDPKKASRPFDKDRNGFVMGEGAGALVLEEYESAKRRGAKIYAEFAGYG 265
FA + S DD KKA D+D++GF+ E L L+ + + R A AE +
Sbjct: 29 FAKVGLASKSLDDVKKAFYVIDQDKSGFI-EEDELKLFLQNFSPSAR--ALTDAETKAFL 85
Query: 266 ESGD 269
GD
Sbjct: 86 ADGD 89
>pdb|1B8R|A Chain A, Parvalbumin
Length = 108
Score = 26.9 bits (58), Expect = 4.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 206 FASIKALSTRNDDPKKASRPFDKDRNGFV 234
FA + S DD KKA D+D++GF+
Sbjct: 30 FAKVGLTSKSADDVKKAFAIIDQDKSGFI 58
>pdb|1BU3| Refined Crystal Structure Of Calcium-Bound Silver Hake (Pi 4.2)
Parvalbumin At 1.65 A
Length = 109
Score = 26.9 bits (58), Expect = 4.3
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 206 FASIKALSTRNDDPKKASRPFDKDRNGFVMGEGAGALVLEEYESAKRRGAKIYAEFAGYG 265
FA + + DD KKA D+D++GF+ E L L+ + + R A AE +
Sbjct: 31 FAKVGLTAKSADDIKKAFFVIDQDKSGFI-EEDELKLFLQVFSAGAR--ALTDAETKAFL 87
Query: 266 ESGDAN 271
++GD++
Sbjct: 88 KAGDSD 93
>pdb|1PAL| Parvalbumin (Pi 4.10) Complexed With Ca, Ca, And Nh4
pdb|1PVB| Parvalbumin (Pike, Pi 4.10) Complexed With Two Calcium Ions And
One Ammonium Ion
pdb|4PAL| Parvalbumin (Pi 4.10) Complexed With Ca, Mg, And Mg
pdb|2PAL| Parvalbumin (Pi 4.10) Complexed With Mn, Mn, And Mn
pdb|3PAL| Parvalbumin (Pi 4.10) Complexed With Ca, Ca, And Mg
Length = 108
Score = 26.9 bits (58), Expect = 4.3
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 206 FASIKALSTRNDDPKKASRPFDKDRNGFVMGEGAGALVLEEYESAKRRGAKIYAEFAGYG 265
FA + S DD KKA D+D++GF+ E L L+ + + R A AE +
Sbjct: 30 FAKVGLASKSLDDVKKAFYVIDQDKSGFI-EEDELKLFLQNFSPSAR--ALTDAETKAFL 86
Query: 266 ESGD 269
GD
Sbjct: 87 ADGD 90
>pdb|4CPV| Calcium-Binding Parvalbumin (pI4.25)
pdb|1CDP| Cadmium-Substituted Calcium-Binding Parvalbumin B
pdb|5CPV| Calcium-Binding Parvalbumin B
Length = 109
Score = 26.9 bits (58), Expect = 4.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 206 FASIKALSTRNDDPKKASRPFDKDRNGFV 234
FA + S DD KKA D+D++GF+
Sbjct: 31 FAKVGLTSKSADDVKKAFAIIDQDKSGFI 59
>pdb|1G33|A Chain A, Crystal Structure Of Rat Parvalbumin Without The
N-Terminal Domain
Length = 73
Score = 26.6 bits (57), Expect = 5.6
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 217 DDPKKASRPFDKDRNGFVMGEGAGALVLEEYESAKRRGAK 256
DD KK DKD++GF+ + G+++ A+ AK
Sbjct: 5 DDVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAK 44
>pdb|1GGZ|A Chain A, Crystal Structure Of The Calmodulin-Like Protein (Hclp)
From Human Epithelial Cells
Length = 148
Score = 26.2 bits (56), Expect = 7.3
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 205 GFASIKALSTRNDDP-KKASRPFDKDRNGFV 234
G + K T N++ ++A R FDKD NGFV
Sbjct: 70 GMMARKMKDTDNEEEIREAFRVFDKDGNGFV 100
>pdb|1CX1|A Chain A, Second N-Terminal Cellulose-Binding Domain From
Cellulomonas Fimi Beta-1,4-Glucanase C, Nmr, 22
Structures
Length = 153
Score = 26.2 bits (56), Expect = 7.3
Identities = 14/36 (38%), Positives = 18/36 (49%)
Query: 323 FGSKEKVPPVSSTKGQIGHCLGAAGALEAVISIMAM 358
F S PP GQ+ LG AGA E IS +++
Sbjct: 113 FTSNLTFPPDGDAPGQVAFHLGKAGAYEFCISQVSL 148
>pdb|2HIS| Cellulomonas Fimi XylanaseCELLULASE DOUBLE MUTANT E127aH205N WITH
COVALENT CELLOBIOSE
Length = 312
Score = 25.8 bits (55), Expect = 9.5
Identities = 14/37 (37%), Positives = 19/37 (50%)
Query: 281 EGAFRAMKMALEMAKVEIGYVNAHGTSTHYNDLYESI 317
E AFRA + A AK+ I N G + N LY+ +
Sbjct: 151 ETAFRAARAADPTAKLCINDYNVEGINAKSNSLYDLV 187
>pdb|1J01|A Chain A, Crystal Structure Of The Xylanase Cex With Xylobiose-
Derived Inhibitor Isofagomine Lactam
pdb|1FH9|A Chain A, Crystal Structure Of The Xylanase Cex With Xylobiose-
Derived Lactam Oxime Inhibitor
pdb|2EXO| Exo-1,4-Beta-D-Glycanase (CellulaseXYLANASE) (E.C.3.2.1.91)
(Enzymatically Active Domain)
pdb|1FH7|A Chain A, Crystal Structure Of The Xylanase Cex With Xylobiose-
Derived Inhibitor Deoxynojirimycin
pdb|1FHD|A Chain A, Crystal Structure Of The Xylanase Cex With Xylobiose-
Derived Imidazole Inhibitor
pdb|2XYL| Cellulomonas Fimi XylanaseCELLULASE COMPLEXED WITH
2-Deoxy-2-Fluoro-Xylobiose
pdb|1FH8|A Chain A, Crystal Structure Of The Xylanase Cex With Xylobiose-
Derived Isofagomine Inhibitor
pdb|1EXP| Beta-1,4-Glycanase Cex-Cd
Length = 312
Score = 25.8 bits (55), Expect = 9.5
Identities = 14/37 (37%), Positives = 19/37 (50%)
Query: 281 EGAFRAMKMALEMAKVEIGYVNAHGTSTHYNDLYESI 317
E AFRA + A AK+ I N G + N LY+ +
Sbjct: 151 ETAFRAARAADPTAKLCINDYNVEGINAKSNSLYDLV 187
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.317 0.136 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,374,287
Number of Sequences: 13198
Number of extensions: 98382
Number of successful extensions: 311
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 274
Number of HSP's gapped (non-prelim): 20
length of query: 412
length of database: 2,899,336
effective HSP length: 90
effective length of query: 322
effective length of database: 1,711,516
effective search space: 551108152
effective search space used: 551108152
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)