BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645184|ref|NP_207354.1| acyl carrier protein (acpP)
[Helicobacter pylori 26695]
(78 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1ACP| Acyl Carrier Protein (Nmr, 2 Structures) 80 4e-17
pdb|1HY8|A Chain A, Solution Structure Of B. Subtilis Acyl ... 79 7e-17
pdb|1F80|E Chain E, Holo-(Acyl Carrier Protein) Synthase In... 78 2e-16
pdb|1KLP|A Chain A, The Solution Structure Of Acyl Carrier ... 64 4e-12
pdb|1FH1|A Chain A, Backbone Fold Of Nodf 35 0.001
pdb|1AF8| Actinorhodin Polyketide Synthase Acyl Carrier P... 34 0.003
pdb|1DV5|A Chain A, Tertiary Structure Of Apo-D-Alanyl Carr... 27 0.40
pdb|1MIO|B Chain B, Nitrogenase Molybdenum-Iron Protein >gi... 27 0.53
pdb|1JBA|A Chain A, Unmyristoylated Gcap-2 With Three Calci... 27 0.53
pdb|1F1O|A Chain A, Structural Studies Of Adenylosuccinate ... 25 1.5
pdb|1QRQ|A Chain A, Structure Of A Voltage-Dependent K+ Cha... 24 2.6
pdb|1EXB|A Chain A, Structure Of The Cytoplasmic Beta Subun... 24 2.6
pdb|1CLQ|A Chain A, Crystal Structure Of A Replication Fork... 24 3.4
pdb|1HDG|O Chain O, Holo-D-Glyceraldehyde-3-Phosphate Dehyd... 24 3.4
pdb|1IG9|A Chain A, Structure Of The Replicating Complex Of... 24 3.4
pdb|1CTT| Cytidine Deaminase (Cda) (E.C.3.5.4.5) Complexe... 24 3.4
pdb|1MIO|C Chain C, Nitrogenase Molybdenum-Iron Protein 23 4.5
pdb|1MIO|A Chain A, Nitrogenase Molybdenum-Iron Protein 23 4.5
pdb|1EEX|A Chain A, Crystal Structure Of The Diol Dehydrata... 23 7.6
pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a 22 10.0
pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v 22 10.0
pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Syna... 22 10.0
pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junct... 22 10.0
pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant 22 10.0
pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant 22 10.0
pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant 22 10.0
>pdb|1ACP| Acyl Carrier Protein (Nmr, 2 Structures)
Length = 77
Score = 80.1 bits (196), Expect = 4e-17
Identities = 40/72 (55%), Positives = 51/72 (70%)
Query: 5 EDIQAVIAEQLNVDAVQVTPEAEFVKDLGADSLDVVELIMALEEKFGVEIPDEQAEKIIN 64
E ++ +I EQL V +VT A FV+DLGADSLD VEL+MALEE+F EIPDE+AEKI
Sbjct: 5 ERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKITT 64
Query: 65 VGDVVKYIEDNK 76
V + YI ++
Sbjct: 65 VQAAIDYINGHQ 76
>pdb|1HY8|A Chain A, Solution Structure Of B. Subtilis Acyl Carrier Protein
Length = 76
Score = 79.3 bits (194), Expect = 7e-17
Identities = 39/72 (54%), Positives = 51/72 (70%)
Query: 5 EDIQAVIAEQLNVDAVQVTPEAEFVKDLGADSLDVVELIMALEEKFGVEIPDEQAEKIIN 64
E + +I ++L VD V EA F +DLGADSLDVVEL+M LE++F +EI DE AEKI
Sbjct: 5 ERVTKIIVDRLGVDEADVKLEASFKEDLGADSLDVVELVMELEDEFDMEISDEDAEKIAT 64
Query: 65 VGDVVKYIEDNK 76
VGD V YI++ +
Sbjct: 65 VGDAVNYIQNQQ 76
>pdb|1F80|E Chain E, Holo-(Acyl Carrier Protein) Synthase In Complex With
Holo- (Acyl Carrier Protein)
pdb|1F80|D Chain D, Holo-(Acyl Carrier Protein) Synthase In Complex With
Holo- (Acyl Carrier Protein)
pdb|1F80|F Chain F, Holo-(Acyl Carrier Protein) Synthase In Complex With
Holo- (Acyl Carrier Protein)
Length = 81
Score = 77.8 bits (190), Expect = 2e-16
Identities = 38/72 (52%), Positives = 50/72 (68%)
Query: 5 EDIQAVIAEQLNVDAVQVTPEAEFVKDLGADSLDVVELIMALEEKFGVEIPDEQAEKIIN 64
E + +I ++L VD V EA F +DLGAD LDVVEL+M LE++F +EI DE AEKI
Sbjct: 10 ERVTKIIVDRLGVDEADVKLEASFKEDLGADXLDVVELVMELEDEFDMEISDEDAEKIAT 69
Query: 65 VGDVVKYIEDNK 76
VGD V YI++ +
Sbjct: 70 VGDAVNYIQNQQ 81
>pdb|1KLP|A Chain A, The Solution Structure Of Acyl Carrier Protein From
Mycobacterium Tuberculosis
Length = 115
Score = 63.5 bits (153), Expect = 4e-12
Identities = 30/67 (44%), Positives = 43/67 (63%)
Query: 7 IQAVIAEQLNVDAVQVTPEAEFVKDLGADSLDVVELIMALEEKFGVEIPDEQAEKIINVG 66
I +I E ++ ++TPE FV DL DSL +VE+ + E+K+GV+IPDE + VG
Sbjct: 12 IAEIIEEVTGIEPSEITPEKSFVDDLDIDSLSMVEIAVQTEDKYGVKIPDEDLAGLRTVG 71
Query: 67 DVVKYIE 73
DVV YI+
Sbjct: 72 DVVAYIQ 78
>pdb|1FH1|A Chain A, Backbone Fold Of Nodf
Length = 92
Score = 35.0 bits (79), Expect = 0.001
Identities = 20/69 (28%), Positives = 40/69 (56%), Gaps = 4/69 (5%)
Query: 7 IQAVIAEQLNVDAVQVTPEAEFVKDLGADSLDVVELIMALEEKFGVEIPDEQAE---KII 63
++A E+ +V ++T + E LG DSL + +++ LE+ +G++I A+ +
Sbjct: 17 VKAENGERTSVALGEITTDTELTS-LGIDSLGLADVLWDLEQLYGIKIEMNTADAWSNLN 75
Query: 64 NVGDVVKYI 72
N+GDVV+ +
Sbjct: 76 NIGDVVEAV 84
>pdb|1AF8| Actinorhodin Polyketide Synthase Acyl Carrier Protein From
Streptomyces Coelicolor A3(2), Nmr, 24 Structures
pdb|2AF8| Actinorhodin Polyketide Synthase Acyl Carrier Protein From
Streptomyces Coelicolor A3(2), Nmr, Minimized Average
Structure
Length = 86
Score = 33.9 bits (76), Expect = 0.003
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 30 KDLGADSLDVVELIMALEEKFGVEIPDEQAEKI 62
+D+G DSL ++E LE ++GV IPD+ A ++
Sbjct: 36 EDIGYDSLALMETAARLESRYGVSIPDDVAGRV 68
>pdb|1DV5|A Chain A, Tertiary Structure Of Apo-D-Alanyl Carrier Protein
pdb|1HQB|A Chain A, Tertiary Structure Of Apo-D-Alanyl Carrier Protein
Length = 80
Score = 26.9 bits (58), Expect = 0.40
Identities = 13/60 (21%), Positives = 31/60 (51%)
Query: 2 ALFEDIQAVIAEQLNVDAVQVTPEAEFVKDLGADSLDVVELIMALEEKFGVEIPDEQAEK 61
A+ + ++A+ D V+ + + DS+ V+L++ L+ +FGV+ P + ++
Sbjct: 4 AIKNGVLDILADLTGSDDVKKNLDLNLFETGLLDSMGTVQLLLELQSQFGVDAPVSEFDR 63
>pdb|1MIO|B Chain B, Nitrogenase Molybdenum-Iron Protein
pdb|1MIO|D Chain D, Nitrogenase Molybdenum-Iron Protein
Length = 458
Score = 26.6 bits (57), Expect = 0.53
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 32 LGADSLDVVELIMALEEKFGVEIP----DEQAEKIINVGDVVKYIEDNKLA 78
+G + D E IMAL E G E+P +E+ + I + D +Y++ K+A
Sbjct: 268 IGVSATD--EFIMALSEATGKEVPASIEEERGQLIDLMIDAQQYLQGKKVA 316
>pdb|1JBA|A Chain A, Unmyristoylated Gcap-2 With Three Calcium Ions Bound
Length = 204
Score = 26.6 bits (57), Expect = 0.53
Identities = 14/36 (38%), Positives = 21/36 (57%)
Query: 37 LDVVELIMALEEKFGVEIPDEQAEKIINVGDVVKYI 72
LD+VE I L++ VE+ EQ K++ +VV I
Sbjct: 118 LDIVESIYKLKKACSVEVEAEQQGKLLTPEEVVDRI 153
>pdb|1F1O|A Chain A, Structural Studies Of Adenylosuccinate Lyases
Length = 431
Score = 25.0 bits (53), Expect = 1.5
Identities = 14/48 (29%), Positives = 25/48 (51%), Gaps = 1/48 (2%)
Query: 7 IQAVIAEQLNVDAVQVTPEAEFVKDLGADSLDVVELIMALEEKFGVEI 54
++ + E+L + A ++ + +D AD + + LI EKF VEI
Sbjct: 194 VEQYVCEKLGLKAAPISTQT-LQRDRHADYMATLALIATSIEKFAVEI 240
>pdb|1QRQ|A Chain A, Structure Of A Voltage-Dependent K+ Channel Beta Subunit
pdb|1QRQ|B Chain B, Structure Of A Voltage-Dependent K+ Channel Beta Subunit
pdb|1QRQ|C Chain C, Structure Of A Voltage-Dependent K+ Channel Beta Subunit
pdb|1QRQ|D Chain D, Structure Of A Voltage-Dependent K+ Channel Beta Subunit
Length = 325
Score = 24.3 bits (51), Expect = 2.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 27 EFVKDLGADSLDVVELIMALEEKFGVEIPDEQAEKIINV 65
+F ++LG L V L + FG +I DE AE ++ +
Sbjct: 2 QFYRNLGKSGLRVSCLGLGTWVTFGGQITDEMAEHLMTL 40
>pdb|1EXB|A Chain A, Structure Of The Cytoplasmic Beta Subunit-T1 Assembly Of
Voltage-Dependent K Channels
Length = 332
Score = 24.3 bits (51), Expect = 2.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 27 EFVKDLGADSLDVVELIMALEEKFGVEIPDEQAEKIINV 65
+F ++LG L V L + FG +I DE AE ++ +
Sbjct: 2 QFYRNLGKSGLRVSCLGLGTWVTFGGQITDEMAEHLMTL 40
>pdb|1CLQ|A Chain A, Crystal Structure Of A Replication Fork Dna Polymerase
Editing Complex At 2.7 A Resolution
pdb|1WAJ| Dna Polymerase From Bacteriophage Rb69
pdb|1WAF|A Chain A, Dna Polymerase From Bacteriophage Rb69
pdb|1WAF|B Chain B, Dna Polymerase From Bacteriophage Rb69
pdb|1IH7|A Chain A, High-Resolution Structure Of Apo Rb69 Dna Polymerase
Length = 903
Score = 23.9 bits (50), Expect = 3.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 40 VELIMALEEKFGVEIPDEQAEKII 63
+E+ L+E+ G E+P E +KII
Sbjct: 164 IEIAAKLQEQGGDEVPSEIIDKII 187
>pdb|1HDG|O Chain O, Holo-D-Glyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12) (Synchrotron X-Ray Diffraction)
pdb|1HDG|Q Chain Q, Holo-D-Glyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12) (Synchrotron X-Ray Diffraction)
Length = 332
Score = 23.9 bits (50), Expect = 3.4
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 5 EDIQAVIAEQLNVDAVQVTPEAEFVKDLGADSLDVVELIMALEEKFGV 52
EDI VI N D Q+ PE + + + ++ L EKFG+
Sbjct: 126 EDITVVIG--CNED--QLKPEHTIISCASCTTNSIAPIVKVLHEKFGI 169
>pdb|1IG9|A Chain A, Structure Of The Replicating Complex Of A Pol Alpha Family
Dna Polymerase
Length = 903
Score = 23.9 bits (50), Expect = 3.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 40 VELIMALEEKFGVEIPDEQAEKII 63
+E+ L+E+ G E+P E +KII
Sbjct: 164 IEIAAKLQEQGGDEVPSEIIDKII 187
>pdb|1CTT| Cytidine Deaminase (Cda) (E.C.3.5.4.5) Complexed With
3,4-Dihydrozebularine (Dhz)
pdb|1AF2|A Chain A, Crystal Structure Of Cytidine Deaminase Complexed With
Uridine
pdb|1ALN| Crystal Structure Of Cytidine Deaminase Complexed With
3-Deazacytidine
pdb|1CTU| Cytidine Deaminase (Cda) (E.C.3.5.4.5) Complexed With 3,4 Hydrated
Pyrimidine-2-One Riboside (Zeb)
Length = 294
Score = 23.9 bits (50), Expect = 3.4
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 4 FEDIQ-AVIAEQLNVDAVQVTPEAEFVKDLGADSLDVVEL 42
+ DIQ AV+AE+ + +Q + +K LG S+D V L
Sbjct: 254 YPDIQRAVLAEKADAPLIQWDATSATLKALGCHSIDRVLL 293
>pdb|1MIO|C Chain C, Nitrogenase Molybdenum-Iron Protein
Length = 533
Score = 23.5 bits (49), Expect = 4.5
Identities = 11/36 (30%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 32 LGADSLDVVELIMALEE-KFGVEIPDEQAEKIINVG 66
+ ADS ++ E+ + +E K+ V IP+++ E++ G
Sbjct: 385 IDADSKNIPEITVTPDEQKYRVVIPEDKVEELKKAG 420
>pdb|1MIO|A Chain A, Nitrogenase Molybdenum-Iron Protein
Length = 525
Score = 23.5 bits (49), Expect = 4.5
Identities = 11/36 (30%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 32 LGADSLDVVELIMALEE-KFGVEIPDEQAEKIINVG 66
+ ADS ++ E+ + +E K+ V IP+++ E++ G
Sbjct: 385 IDADSKNIPEITVTPDEQKYRVVIPEDKVEELKKAG 420
>pdb|1EEX|A Chain A, Crystal Structure Of The Diol Dehydratase-
Adeninylpentylcobalamin Complex From Klebsiella Oxytoca
pdb|1EEX|L Chain L, Crystal Structure Of The Diol Dehydratase-
Adeninylpentylcobalamin Complex From Klebsiella Oxytoca
pdb|1EGV|A Chain A, Crystal Structure Of The Diol Dehydratase-
Adeninylpentylcobalamin Complex From Klebsella Oxytoca
Under The Illuminated Condition.
pdb|1EGV|L Chain L, Crystal Structure Of The Diol Dehydratase-
Adeninylpentylcobalamin Complex From Klebsella Oxytoca
Under The Illuminated Condition.
pdb|1EGM|A Chain A, Crystal Structure Of Diol Dehydratase-Cyanocobalamin
Complex At 100k.
pdb|1EGM|L Chain L, Crystal Structure Of Diol Dehydratase-Cyanocobalamin
Complex At 100k.
pdb|1DIO|A Chain A, Diol Dehydratase-Cyanocobalamin Complex From Klebsiella
Oxytoca
pdb|1DIO|L Chain L, Diol Dehydratase-Cyanocobalamin Complex From Klebsiella
Oxytoca
Length = 554
Score = 22.7 bits (47), Expect = 7.6
Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 37 LDVVELIMALEEKFGVEIPDEQAEKIINVGD 67
++VVE++MA+++ P +QA + NV D
Sbjct: 120 MNVVEMMMAMQKMRARRTPSQQAH-VTNVKD 149
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 22.3 bits (46), Expect = 10.0
Identities = 11/32 (34%), Positives = 16/32 (49%)
Query: 7 IQAVIAEQLNVDAVQVTPEAEFVKDLGADSLD 38
+ V A+++N D V T E + D G D D
Sbjct: 230 LTVVKADRINTDIVLKTMEVLNIDDEGLDEFD 261
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 22.3 bits (46), Expect = 10.0
Identities = 11/32 (34%), Positives = 16/32 (49%)
Query: 7 IQAVIAEQLNVDAVQVTPEAEFVKDLGADSLD 38
+ V A+++N D V T E + D G D D
Sbjct: 230 LTVVKADRINTDIVLKTMEVLNIDDEGLDEFD 261
>pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b-
Domain: Synaptotagmin 1 As A Phospholipid Binding
Machine
Length = 152
Score = 22.3 bits (46), Expect = 10.0
Identities = 10/24 (41%), Positives = 14/24 (57%)
Query: 48 EKFGVEIPDEQAEKIINVGDVVKY 71
E F E+P EQ +K+ V V+ Y
Sbjct: 72 ESFSFEVPFEQIQKVQVVVTVLDY 95
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 22.3 bits (46), Expect = 10.0
Identities = 11/32 (34%), Positives = 16/32 (49%)
Query: 7 IQAVIAEQLNVDAVQVTPEAEFVKDLGADSLD 38
+ V A+++N D V T E + D G D D
Sbjct: 230 LTVVKADRINTDIVLKTMEVLNIDDEGLDEFD 261
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 22.3 bits (46), Expect = 10.0
Identities = 11/32 (34%), Positives = 16/32 (49%)
Query: 7 IQAVIAEQLNVDAVQVTPEAEFVKDLGADSLD 38
+ V A+++N D V T E + D G D D
Sbjct: 230 LTVVKADRINTDIVLKTMEVLNIDDEGLDEFD 261
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 22.3 bits (46), Expect = 10.0
Identities = 11/32 (34%), Positives = 16/32 (49%)
Query: 7 IQAVIAEQLNVDAVQVTPEAEFVKDLGADSLD 38
+ V A+++N D V T E + D G D D
Sbjct: 230 LTVVKADRINTDIVLKTMEVLNIDDEGLDEFD 261
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 22.3 bits (46), Expect = 10.0
Identities = 11/32 (34%), Positives = 16/32 (49%)
Query: 7 IQAVIAEQLNVDAVQVTPEAEFVKDLGADSLD 38
+ V A+++N D V T E + D G D D
Sbjct: 230 LTVVKADRINTDIVLKTMEVLNIDDEGLDEFD 261
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.315 0.136 0.350
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 404,213
Number of Sequences: 13198
Number of extensions: 13748
Number of successful extensions: 48
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 28
Number of HSP's gapped (non-prelim): 26
length of query: 78
length of database: 2,899,336
effective HSP length: 54
effective length of query: 24
effective length of database: 2,186,644
effective search space: 52479456
effective search space used: 52479456
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 46 (22.3 bits)