BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645184|ref|NP_207354.1| acyl carrier protein (acpP)
[Helicobacter pylori 26695]
         (78 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1ACP|    Acyl Carrier Protein (Nmr, 2 Structures)              80  4e-17
pdb|1HY8|A  Chain A, Solution Structure Of B. Subtilis Acyl ...    79  7e-17
pdb|1F80|E  Chain E, Holo-(Acyl Carrier Protein) Synthase In...    78  2e-16
pdb|1KLP|A  Chain A, The Solution Structure Of Acyl Carrier ...    64  4e-12
pdb|1FH1|A  Chain A, Backbone Fold Of Nodf                         35  0.001
pdb|1AF8|    Actinorhodin Polyketide Synthase Acyl Carrier P...    34  0.003
pdb|1DV5|A  Chain A, Tertiary Structure Of Apo-D-Alanyl Carr...    27  0.40
pdb|1MIO|B  Chain B, Nitrogenase Molybdenum-Iron Protein >gi...    27  0.53
pdb|1JBA|A  Chain A, Unmyristoylated Gcap-2 With Three Calci...    27  0.53
pdb|1F1O|A  Chain A, Structural Studies Of Adenylosuccinate ...    25  1.5
pdb|1QRQ|A  Chain A, Structure Of A Voltage-Dependent K+ Cha...    24  2.6
pdb|1EXB|A  Chain A, Structure Of The Cytoplasmic Beta Subun...    24  2.6
pdb|1CLQ|A  Chain A, Crystal Structure Of A Replication Fork...    24  3.4
pdb|1HDG|O  Chain O, Holo-D-Glyceraldehyde-3-Phosphate Dehyd...    24  3.4
pdb|1IG9|A  Chain A, Structure Of The Replicating Complex Of...    24  3.4
pdb|1CTT|    Cytidine Deaminase (Cda) (E.C.3.5.4.5) Complexe...    24  3.4
pdb|1MIO|C  Chain C, Nitrogenase Molybdenum-Iron Protein           23  4.5
pdb|1MIO|A  Chain A, Nitrogenase Molybdenum-Iron Protein           23  4.5
pdb|1EEX|A  Chain A, Crystal Structure Of The Diol Dehydrata...    23  7.6
pdb|1IN7|A  Chain A, Thermotoga Maritima Ruvb R170a                22  10.0
pdb|1IN8|A  Chain A, Thermotoga Maritima Ruvb T158v                22  10.0
pdb|1K5W|A  Chain A, Three-Dimensional Structure Of The Syna...    22  10.0
pdb|1IN4|A  Chain A, Thermotoga Maritima Ruvb Holliday Junct...    22  10.0
pdb|1J7K|A  Chain A, Thermotoga Maritima Ruvb P216g Mutant         22  10.0
pdb|1IN5|A  Chain A, Thermogota Maritima Ruvb A156s Mutant         22  10.0
pdb|1IN6|A  Chain A, Thermotoga Maritima Ruvb K64r Mutant          22  10.0
>pdb|1ACP|   Acyl Carrier Protein (Nmr, 2 Structures)
          Length = 77

 Score = 80.1 bits (196), Expect = 4e-17
 Identities = 40/72 (55%), Positives = 51/72 (70%)

Query: 5  EDIQAVIAEQLNVDAVQVTPEAEFVKDLGADSLDVVELIMALEEKFGVEIPDEQAEKIIN 64
          E ++ +I EQL V   +VT  A FV+DLGADSLD VEL+MALEE+F  EIPDE+AEKI  
Sbjct: 5  ERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKITT 64

Query: 65 VGDVVKYIEDNK 76
          V   + YI  ++
Sbjct: 65 VQAAIDYINGHQ 76
>pdb|1HY8|A Chain A, Solution Structure Of B. Subtilis Acyl Carrier Protein
          Length = 76

 Score = 79.3 bits (194), Expect = 7e-17
 Identities = 39/72 (54%), Positives = 51/72 (70%)

Query: 5  EDIQAVIAEQLNVDAVQVTPEAEFVKDLGADSLDVVELIMALEEKFGVEIPDEQAEKIIN 64
          E +  +I ++L VD   V  EA F +DLGADSLDVVEL+M LE++F +EI DE AEKI  
Sbjct: 5  ERVTKIIVDRLGVDEADVKLEASFKEDLGADSLDVVELVMELEDEFDMEISDEDAEKIAT 64

Query: 65 VGDVVKYIEDNK 76
          VGD V YI++ +
Sbjct: 65 VGDAVNYIQNQQ 76
>pdb|1F80|E Chain E, Holo-(Acyl Carrier Protein) Synthase In Complex With
          Holo- (Acyl Carrier Protein)
 pdb|1F80|D Chain D, Holo-(Acyl Carrier Protein) Synthase In Complex With
          Holo- (Acyl Carrier Protein)
 pdb|1F80|F Chain F, Holo-(Acyl Carrier Protein) Synthase In Complex With
          Holo- (Acyl Carrier Protein)
          Length = 81

 Score = 77.8 bits (190), Expect = 2e-16
 Identities = 38/72 (52%), Positives = 50/72 (68%)

Query: 5  EDIQAVIAEQLNVDAVQVTPEAEFVKDLGADSLDVVELIMALEEKFGVEIPDEQAEKIIN 64
          E +  +I ++L VD   V  EA F +DLGAD LDVVEL+M LE++F +EI DE AEKI  
Sbjct: 10 ERVTKIIVDRLGVDEADVKLEASFKEDLGADXLDVVELVMELEDEFDMEISDEDAEKIAT 69

Query: 65 VGDVVKYIEDNK 76
          VGD V YI++ +
Sbjct: 70 VGDAVNYIQNQQ 81
>pdb|1KLP|A Chain A, The Solution Structure Of Acyl Carrier Protein From
          Mycobacterium Tuberculosis
          Length = 115

 Score = 63.5 bits (153), Expect = 4e-12
 Identities = 30/67 (44%), Positives = 43/67 (63%)

Query: 7  IQAVIAEQLNVDAVQVTPEAEFVKDLGADSLDVVELIMALEEKFGVEIPDEQAEKIINVG 66
          I  +I E   ++  ++TPE  FV DL  DSL +VE+ +  E+K+GV+IPDE    +  VG
Sbjct: 12 IAEIIEEVTGIEPSEITPEKSFVDDLDIDSLSMVEIAVQTEDKYGVKIPDEDLAGLRTVG 71

Query: 67 DVVKYIE 73
          DVV YI+
Sbjct: 72 DVVAYIQ 78
>pdb|1FH1|A Chain A, Backbone Fold Of Nodf
          Length = 92

 Score = 35.0 bits (79), Expect = 0.001
 Identities = 20/69 (28%), Positives = 40/69 (56%), Gaps = 4/69 (5%)

Query: 7  IQAVIAEQLNVDAVQVTPEAEFVKDLGADSLDVVELIMALEEKFGVEIPDEQAE---KII 63
          ++A   E+ +V   ++T + E    LG DSL + +++  LE+ +G++I    A+    + 
Sbjct: 17 VKAENGERTSVALGEITTDTELTS-LGIDSLGLADVLWDLEQLYGIKIEMNTADAWSNLN 75

Query: 64 NVGDVVKYI 72
          N+GDVV+ +
Sbjct: 76 NIGDVVEAV 84
>pdb|1AF8|   Actinorhodin Polyketide Synthase Acyl Carrier Protein From
          Streptomyces Coelicolor A3(2), Nmr, 24 Structures
 pdb|2AF8|   Actinorhodin Polyketide Synthase Acyl Carrier Protein From
          Streptomyces Coelicolor A3(2), Nmr, Minimized Average
          Structure
          Length = 86

 Score = 33.9 bits (76), Expect = 0.003
 Identities = 14/33 (42%), Positives = 23/33 (69%)

Query: 30 KDLGADSLDVVELIMALEEKFGVEIPDEQAEKI 62
          +D+G DSL ++E    LE ++GV IPD+ A ++
Sbjct: 36 EDIGYDSLALMETAARLESRYGVSIPDDVAGRV 68
>pdb|1DV5|A Chain A, Tertiary Structure Of Apo-D-Alanyl Carrier Protein
 pdb|1HQB|A Chain A, Tertiary Structure Of Apo-D-Alanyl Carrier Protein
          Length = 80

 Score = 26.9 bits (58), Expect = 0.40
 Identities = 13/60 (21%), Positives = 31/60 (51%)

Query: 2  ALFEDIQAVIAEQLNVDAVQVTPEAEFVKDLGADSLDVVELIMALEEKFGVEIPDEQAEK 61
          A+   +  ++A+    D V+   +    +    DS+  V+L++ L+ +FGV+ P  + ++
Sbjct: 4  AIKNGVLDILADLTGSDDVKKNLDLNLFETGLLDSMGTVQLLLELQSQFGVDAPVSEFDR 63
>pdb|1MIO|B Chain B, Nitrogenase Molybdenum-Iron Protein
 pdb|1MIO|D Chain D, Nitrogenase Molybdenum-Iron Protein
          Length = 458

 Score = 26.6 bits (57), Expect = 0.53
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 6/51 (11%)

Query: 32  LGADSLDVVELIMALEEKFGVEIP----DEQAEKIINVGDVVKYIEDNKLA 78
           +G  + D  E IMAL E  G E+P    +E+ + I  + D  +Y++  K+A
Sbjct: 268 IGVSATD--EFIMALSEATGKEVPASIEEERGQLIDLMIDAQQYLQGKKVA 316
>pdb|1JBA|A Chain A, Unmyristoylated Gcap-2 With Three Calcium Ions Bound
          Length = 204

 Score = 26.6 bits (57), Expect = 0.53
 Identities = 14/36 (38%), Positives = 21/36 (57%)

Query: 37  LDVVELIMALEEKFGVEIPDEQAEKIINVGDVVKYI 72
           LD+VE I  L++   VE+  EQ  K++   +VV  I
Sbjct: 118 LDIVESIYKLKKACSVEVEAEQQGKLLTPEEVVDRI 153
>pdb|1F1O|A Chain A, Structural Studies Of Adenylosuccinate Lyases
          Length = 431

 Score = 25.0 bits (53), Expect = 1.5
 Identities = 14/48 (29%), Positives = 25/48 (51%), Gaps = 1/48 (2%)

Query: 7   IQAVIAEQLNVDAVQVTPEAEFVKDLGADSLDVVELIMALEEKFGVEI 54
           ++  + E+L + A  ++ +    +D  AD +  + LI    EKF VEI
Sbjct: 194 VEQYVCEKLGLKAAPISTQT-LQRDRHADYMATLALIATSIEKFAVEI 240
>pdb|1QRQ|A Chain A, Structure Of A Voltage-Dependent K+ Channel Beta Subunit
 pdb|1QRQ|B Chain B, Structure Of A Voltage-Dependent K+ Channel Beta Subunit
 pdb|1QRQ|C Chain C, Structure Of A Voltage-Dependent K+ Channel Beta Subunit
 pdb|1QRQ|D Chain D, Structure Of A Voltage-Dependent K+ Channel Beta Subunit
          Length = 325

 Score = 24.3 bits (51), Expect = 2.6
 Identities = 13/39 (33%), Positives = 21/39 (53%)

Query: 27 EFVKDLGADSLDVVELIMALEEKFGVEIPDEQAEKIINV 65
          +F ++LG   L V  L +     FG +I DE AE ++ +
Sbjct: 2  QFYRNLGKSGLRVSCLGLGTWVTFGGQITDEMAEHLMTL 40
>pdb|1EXB|A Chain A, Structure Of The Cytoplasmic Beta Subunit-T1 Assembly Of
          Voltage-Dependent K Channels
          Length = 332

 Score = 24.3 bits (51), Expect = 2.6
 Identities = 13/39 (33%), Positives = 21/39 (53%)

Query: 27 EFVKDLGADSLDVVELIMALEEKFGVEIPDEQAEKIINV 65
          +F ++LG   L V  L +     FG +I DE AE ++ +
Sbjct: 2  QFYRNLGKSGLRVSCLGLGTWVTFGGQITDEMAEHLMTL 40
>pdb|1CLQ|A Chain A, Crystal Structure Of A Replication Fork Dna Polymerase
           Editing Complex At 2.7 A Resolution
 pdb|1WAJ|   Dna Polymerase From Bacteriophage Rb69
 pdb|1WAF|A Chain A, Dna Polymerase From Bacteriophage Rb69
 pdb|1WAF|B Chain B, Dna Polymerase From Bacteriophage Rb69
 pdb|1IH7|A Chain A, High-Resolution Structure Of Apo Rb69 Dna Polymerase
          Length = 903

 Score = 23.9 bits (50), Expect = 3.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 40  VELIMALEEKFGVEIPDEQAEKII 63
           +E+   L+E+ G E+P E  +KII
Sbjct: 164 IEIAAKLQEQGGDEVPSEIIDKII 187
>pdb|1HDG|O Chain O, Holo-D-Glyceraldehyde-3-Phosphate Dehydrogenase
           (E.C.1.2.1.12) (Synchrotron X-Ray Diffraction)
 pdb|1HDG|Q Chain Q, Holo-D-Glyceraldehyde-3-Phosphate Dehydrogenase
           (E.C.1.2.1.12) (Synchrotron X-Ray Diffraction)
          Length = 332

 Score = 23.9 bits (50), Expect = 3.4
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 5   EDIQAVIAEQLNVDAVQVTPEAEFVKDLGADSLDVVELIMALEEKFGV 52
           EDI  VI    N D  Q+ PE   +      +  +  ++  L EKFG+
Sbjct: 126 EDITVVIG--CNED--QLKPEHTIISCASCTTNSIAPIVKVLHEKFGI 169
>pdb|1IG9|A Chain A, Structure Of The Replicating Complex Of A Pol Alpha Family
           Dna Polymerase
          Length = 903

 Score = 23.9 bits (50), Expect = 3.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 40  VELIMALEEKFGVEIPDEQAEKII 63
           +E+   L+E+ G E+P E  +KII
Sbjct: 164 IEIAAKLQEQGGDEVPSEIIDKII 187
>pdb|1CTT|   Cytidine Deaminase (Cda) (E.C.3.5.4.5) Complexed With
           3,4-Dihydrozebularine (Dhz)
 pdb|1AF2|A Chain A, Crystal Structure Of Cytidine Deaminase Complexed With
           Uridine
 pdb|1ALN|   Crystal Structure Of Cytidine Deaminase Complexed With
           3-Deazacytidine
 pdb|1CTU|   Cytidine Deaminase (Cda) (E.C.3.5.4.5) Complexed With 3,4 Hydrated
           Pyrimidine-2-One Riboside (Zeb)
          Length = 294

 Score = 23.9 bits (50), Expect = 3.4
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 4   FEDIQ-AVIAEQLNVDAVQVTPEAEFVKDLGADSLDVVEL 42
           + DIQ AV+AE+ +   +Q    +  +K LG  S+D V L
Sbjct: 254 YPDIQRAVLAEKADAPLIQWDATSATLKALGCHSIDRVLL 293
>pdb|1MIO|C Chain C, Nitrogenase Molybdenum-Iron Protein
          Length = 533

 Score = 23.5 bits (49), Expect = 4.5
 Identities = 11/36 (30%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 32  LGADSLDVVELIMALEE-KFGVEIPDEQAEKIINVG 66
           + ADS ++ E+ +  +E K+ V IP+++ E++   G
Sbjct: 385 IDADSKNIPEITVTPDEQKYRVVIPEDKVEELKKAG 420
>pdb|1MIO|A Chain A, Nitrogenase Molybdenum-Iron Protein
          Length = 525

 Score = 23.5 bits (49), Expect = 4.5
 Identities = 11/36 (30%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 32  LGADSLDVVELIMALEE-KFGVEIPDEQAEKIINVG 66
           + ADS ++ E+ +  +E K+ V IP+++ E++   G
Sbjct: 385 IDADSKNIPEITVTPDEQKYRVVIPEDKVEELKKAG 420
>pdb|1EEX|A Chain A, Crystal Structure Of The Diol Dehydratase-
           Adeninylpentylcobalamin Complex From Klebsiella Oxytoca
 pdb|1EEX|L Chain L, Crystal Structure Of The Diol Dehydratase-
           Adeninylpentylcobalamin Complex From Klebsiella Oxytoca
 pdb|1EGV|A Chain A, Crystal Structure Of The Diol Dehydratase-
           Adeninylpentylcobalamin Complex From Klebsella Oxytoca
           Under The Illuminated Condition.
 pdb|1EGV|L Chain L, Crystal Structure Of The Diol Dehydratase-
           Adeninylpentylcobalamin Complex From Klebsella Oxytoca
           Under The Illuminated Condition.
 pdb|1EGM|A Chain A, Crystal Structure Of Diol Dehydratase-Cyanocobalamin
           Complex At 100k.
 pdb|1EGM|L Chain L, Crystal Structure Of Diol Dehydratase-Cyanocobalamin
           Complex At 100k.
 pdb|1DIO|A Chain A, Diol Dehydratase-Cyanocobalamin Complex From Klebsiella
           Oxytoca
 pdb|1DIO|L Chain L, Diol Dehydratase-Cyanocobalamin Complex From Klebsiella
           Oxytoca
          Length = 554

 Score = 22.7 bits (47), Expect = 7.6
 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 37  LDVVELIMALEEKFGVEIPDEQAEKIINVGD 67
           ++VVE++MA+++      P +QA  + NV D
Sbjct: 120 MNVVEMMMAMQKMRARRTPSQQAH-VTNVKD 149
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
          Length = 334

 Score = 22.3 bits (46), Expect = 10.0
 Identities = 11/32 (34%), Positives = 16/32 (49%)

Query: 7   IQAVIAEQLNVDAVQVTPEAEFVKDLGADSLD 38
           +  V A+++N D V  T E   + D G D  D
Sbjct: 230 LTVVKADRINTDIVLKTMEVLNIDDEGLDEFD 261
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
          Length = 334

 Score = 22.3 bits (46), Expect = 10.0
 Identities = 11/32 (34%), Positives = 16/32 (49%)

Query: 7   IQAVIAEQLNVDAVQVTPEAEFVKDLGADSLD 38
           +  V A+++N D V  T E   + D G D  D
Sbjct: 230 LTVVKADRINTDIVLKTMEVLNIDDEGLDEFD 261
>pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b-
          Domain: Synaptotagmin 1 As A Phospholipid Binding
          Machine
          Length = 152

 Score = 22.3 bits (46), Expect = 10.0
 Identities = 10/24 (41%), Positives = 14/24 (57%)

Query: 48 EKFGVEIPDEQAEKIINVGDVVKY 71
          E F  E+P EQ +K+  V  V+ Y
Sbjct: 72 ESFSFEVPFEQIQKVQVVVTVLDY 95
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
           Migration Motor
          Length = 334

 Score = 22.3 bits (46), Expect = 10.0
 Identities = 11/32 (34%), Positives = 16/32 (49%)

Query: 7   IQAVIAEQLNVDAVQVTPEAEFVKDLGADSLD 38
           +  V A+++N D V  T E   + D G D  D
Sbjct: 230 LTVVKADRINTDIVLKTMEVLNIDDEGLDEFD 261
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
          Length = 334

 Score = 22.3 bits (46), Expect = 10.0
 Identities = 11/32 (34%), Positives = 16/32 (49%)

Query: 7   IQAVIAEQLNVDAVQVTPEAEFVKDLGADSLD 38
           +  V A+++N D V  T E   + D G D  D
Sbjct: 230 LTVVKADRINTDIVLKTMEVLNIDDEGLDEFD 261
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
          Length = 334

 Score = 22.3 bits (46), Expect = 10.0
 Identities = 11/32 (34%), Positives = 16/32 (49%)

Query: 7   IQAVIAEQLNVDAVQVTPEAEFVKDLGADSLD 38
           +  V A+++N D V  T E   + D G D  D
Sbjct: 230 LTVVKADRINTDIVLKTMEVLNIDDEGLDEFD 261
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
          Length = 334

 Score = 22.3 bits (46), Expect = 10.0
 Identities = 11/32 (34%), Positives = 16/32 (49%)

Query: 7   IQAVIAEQLNVDAVQVTPEAEFVKDLGADSLD 38
           +  V A+++N D V  T E   + D G D  D
Sbjct: 230 LTVVKADRINTDIVLKTMEVLNIDDEGLDEFD 261
  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.315    0.136    0.350 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 404,213
Number of Sequences: 13198
Number of extensions: 13748
Number of successful extensions: 48
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 28
Number of HSP's gapped (non-prelim): 26
length of query: 78
length of database: 2,899,336
effective HSP length: 54
effective length of query: 24
effective length of database: 2,186,644
effective search space: 52479456
effective search space used: 52479456
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 46 (22.3 bits)