BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645185|ref|NP_207355.1| hypothetical protein
[Helicobacter pylori 26695]
         (26 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1FFV|B  Chain B, Carbon Monoxide Dehydrogenase From Hydr...    23  5.9

>pdb|1FFV|B Chain B, Carbon Monoxide Dehydrogenase From Hydrogenophaga
           Pseudoflava
 pdb|1FFV|E Chain E, Carbon Monoxide Dehydrogenase From Hydrogenophaga
           Pseudoflava
 pdb|1FFU|B Chain B, Carbon Monoxide Dehydrogenase From Hydrogenophaga
           Pseudoflava Which Lacks The Mo-Pyranopterin Moiety Of
           The Molybdenum Cofactor
 pdb|1FFU|E Chain E, Carbon Monoxide Dehydrogenase From Hydrogenophaga
           Pseudoflava Which Lacks The Mo-Pyranopterin Moiety Of
           The Molybdenum Cofactor
          Length = 803

 Score = 23.5 bits (49), Expect = 5.9
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 2/27 (7%)

Query: 2   GIIYLILFLIV--IYLLYRILDVLEQK 26
           G+ Y   F +   +YL+ R++DVL QK
Sbjct: 380 GVAYXXSFRVTEAVYLIERMVDVLAQK 406



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.346    0.169    0.466 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,079
Number of Sequences: 13198
Number of extensions: 1041
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 1
length of query: 26
length of database: 2,899,336
effective HSP length: 2
effective length of query: 24
effective length of database: 2,872,940
effective search space: 68950560
effective search space used: 68950560
T: 11
A: 40
X1: 15 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.5 bits)
S2: 48 (23.1 bits)