BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645187|ref|NP_207357.1| ribosomal protein S21
(rps21) [Helicobacter pylori 26695]
(70 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1HXP|A Chain A, Nucleotide Transferase >gi|1943511|pdb|... 25 2.1
pdb|1GUP|A Chain A, Structure Of Nucleotidyltransferase Com... 23 4.7
pdb|1HXQ|A Chain A, The Structure Of Nucleotidylated Galact... 23 4.7
pdb|1HXQ|B Chain B, The Structure Of Nucleotidylated Galact... 23 4.7
pdb|1K92|A Chain A, Crystal Structure Of Uncomplexed E. Col... 23 8.0
>pdb|1HXP|A Chain A, Nucleotide Transferase
pdb|1HXP|B Chain B, Nucleotide Transferase
Length = 348
Score = 24.6 bits (52), Expect = 2.1
Identities = 13/40 (32%), Positives = 22/40 (54%)
Query: 13 DEAYRRFKKQTDRNLVVTECRARRFFESKTEKRKKQKISA 52
D +RR+ T + ++V+ RA+R +E E KQ + A
Sbjct: 8 DHPHRRYNPLTGQWILVSPHRAKRPWEGAQETPAKQVLPA 47
>pdb|1GUP|A Chain A, Structure Of Nucleotidyltransferase Complexed With
Udp-Galactose
pdb|1GUQ|A Chain A, Structure Of Nucleotidyltransferase Complexed With
Udp-Glucose
pdb|1GUP|B Chain B, Structure Of Nucleotidyltransferase Complexed With
Udp-Galactose
pdb|1GUP|C Chain C, Structure Of Nucleotidyltransferase Complexed With
Udp-Galactose
pdb|1GUP|D Chain D, Structure Of Nucleotidyltransferase Complexed With
Udp-Galactose
pdb|1GUQ|B Chain B, Structure Of Nucleotidyltransferase Complexed With
Udp-Glucose
pdb|1GUQ|C Chain C, Structure Of Nucleotidyltransferase Complexed With
Udp-Glucose
pdb|1GUQ|D Chain D, Structure Of Nucleotidyltransferase Complexed With
Udp-Glucose
Length = 348
Score = 23.5 bits (49), Expect = 4.7
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 13 DEAYRRFKKQTDRNLVVTECRARRFFESKTEKRKKQKISA 52
D +RR+ T + ++V+ RA+R ++ E KQ + A
Sbjct: 8 DHPHRRYNPLTGQWILVSPHRAKRPWQGAQETPAKQVLPA 47
>pdb|1HXQ|A Chain A, The Structure Of Nucleotidylated Galactose-1-Phosphate
Uridylyltransferase From Escherichia Coli At 1.86
Angstroms Resolution
Length = 348
Score = 23.5 bits (49), Expect = 4.7
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 13 DEAYRRFKKQTDRNLVVTECRARRFFESKTEKRKKQKISA 52
D +RR+ T + ++V+ RA+R ++ E KQ + A
Sbjct: 8 DHPHRRYNPLTGQWILVSPHRAKRPWQGAQETPAKQVLPA 47
>pdb|1HXQ|B Chain B, The Structure Of Nucleotidylated Galactose-1-Phosphate
Uridylyltransferase From Escherichia Coli At 1.86
Angstroms Resolution
Length = 348
Score = 23.5 bits (49), Expect = 4.7
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 13 DEAYRRFKKQTDRNLVVTECRARRFFESKTEKRKKQKISA 52
D +RR+ T + ++V+ RA+R ++ E KQ + A
Sbjct: 8 DHPHRRYNPLTGQWILVSPHRAKRPWQGAQETPAKQVLPA 47
>pdb|1K92|A Chain A, Crystal Structure Of Uncomplexed E. Coli Argininosuccinate
Synthetase
pdb|1KP3|A Chain A, Crystal Structure Of E. Coli Argininosuccinate Synthetase
In Complex With Atp And Citrulline
pdb|1K97|A Chain A, Crystal Structure Of E. Coli Argininosuccinate Synthetase
In Complex With Aspartate And Citrulline
pdb|1KP2|A Chain A, Crystal Structure Of E. Coli Argininosuccinate Synthetase
In Complex With Atp
Length = 455
Score = 22.7 bits (47), Expect = 8.0
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 4 IKVREGDAFDEAYRRFKKQTDRNLVVTECRARRFFESKT 42
+ + +GD+ R + T RNL +T+ R + F +KT
Sbjct: 386 LTMEKGDSVFSPDDRIGQLTMRNLDITDTREKLFGYAKT 424
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.323 0.136 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 333,234
Number of Sequences: 13198
Number of extensions: 8767
Number of successful extensions: 41
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36
Number of HSP's gapped (non-prelim): 5
length of query: 70
length of database: 2,899,336
effective HSP length: 46
effective length of query: 24
effective length of database: 2,292,228
effective search space: 55013472
effective search space used: 55013472
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 47 (22.7 bits)